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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:930897..933477- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001874-T3 ID=KJC3_001874-T3|Name=KJC3_001874-T3|organism=Aspergillus niger KJC3|type=mRNA|length=2581bp|location=Sequence derived from alignment at ch2:930897..933477- (Aspergillus niger KJC3)
CGAAAAGCTTCAATTCTCAGCTGCACCCGCGGATCTCTGGCTATTCCCCC
CTTCCATCCCCGCAGATGATCGGCCTCCAGAGACCTTGTCTCTAACTTTT
GGTCCCCCATCTTTCGTTGGGCCCGACCAGCATTTATTGTGTGTCTCTCG
CCCTTTTCCTTCTCCTCTCTCTTCTCCGCGTCTCACCGCCCGCAATGACC
TTGGATGCATATGACGTCTCTGTTGTTGGATGGCAGCTCTCGGTAGGTGA
TACAAACAAATGCACTTTCTGACTCTGACAACTCTCCACTTCTTACATCC
TTCGAATACCTGGTCCACGTGGACGAGCCACTCTCATCCCACTACCGCCC
CGAATACTAATGTCGCGACAGAAGATATTCCGTGGATAGATTCCATGGCC
CCATCATCATCCACGCAGGACCATGCTGACTCTCAGCCTCCGACGGTCGC
TGCTTTCTCCCCCACCACCATCTCAGGCTCGTCCGTGACATCGAGACAGC
GCTCCAGCATCATCGTGCATCGCAAATCGCCGCTACTGGTGGCCACGCCC
CCTCAGATCACCCGGGCATTGGCCTACTCGCATCCGTTTATTCTCCCCTT
GAACAAGCTCGTTGGATTGCTCACATGGACGACCGGAGACGGTTGGCAGA
GCTTCCTGCTGGTAGCGGGATTCTGGACGCTGGTTCTCTATGGCGACGTG
ATCGTTACTTGGACCGGGCCACTCCTTGTGGTCATTAGCCTTATTCTGGG
CATGTACTGGAGACGCTACTCCCCGCTGTCATCGAGGGCTCACTTGAGTG
AGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGACATTTCCCCATCGGCAT
GAAACGTTGGACGAAATAGTCGAGACGCTACGGACATTTACCACACGTTG
CAATATTCTCCTGGAGCCACTCGTTGAATTTACCGACTTCTTATCCACGC
AGAGGACGGCGACTTCTGCCACTACCCGACCAGCTCTGACGACATTATTC
TTTCGAATCCTCTTCGTGACTCCAATTTGGATCGCCTTGACTCTTCCGCC
GTTGTATCTGATCACCACTCGCCGAGTCATCATGACACTTGGCACCATCA
TTCTCACCTATCACTCTCGCCCGGCAAGAGTATCTCGTGTCATTCTTTGG
CGATCGTTAACAATCCGCCGGGTGTGCTCTATAATTACGGGGCTATCCTT
CTCTTCTACTGTTGATAAGGCGCAGTCGCTGTTAATGCAGAGCCAGGGCC
ATGCAATGAGCATTGCGACAAGACGTCGAGGAGACTCCTCCGGTGTACGA
TTTACCTTTGTCATCTATGAAAACCAACGTCGTTGGCTTGGGATCGGCTG
GACGTACTCTCTGTTCCCTTCCGAGCGAGCTGCTTGGACAGACGAGCATT
TAAATCACGTCCCGTCGAAGGAGGAATTCGAGTTACCCGGTGTCGCAAAC
GGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGTGACTGGCGTATTGAAGG
GGCCGACGAGTCAGGAAAGTCGGATGCCAAAGCCGATGGCGGAGGCTGGG
TCTACTATGACAATAAGGTGGGACACATTGTTTCCCATTTTCTGACAAAT
GTCCAGGTGCCAGGGTTACTAACAGCATGGGAACAGTGGAATGACGGTCG
TCGTGGCCAGGATGGTTGGGATCGATACACCCGTCGTCGGAAGTGGTGTC
GTGACGCCGAACTAGTTGAGATTCCATCAGCGGGCGAGAGCACCTCAGTG
GAGACTAAATCGGGGATCGCTCAATCATTGGAGCAGGAAAAGGCAGCTAA
CGCCCACGAAAAAGAAATCTCATCTACGGTCGACGCCGACGCAGAAAGTC
TCGCCCCGTCAACCTCATCCAAGTCCCGCAAACGACGTTGGTTTGGGAGT
ACGAAGAGTGTAAGCGACAAAGCCAGCAGCATCTCCTCTGCTCCACCAAC
GTCCACGAATAACTCCTCCGTAGATCTCGGAAAATTAAAGTCCGCCACCC
CTACCGGCAGCTACACGCCAACTGGGAAGTCCACCGCAACTGCAACCCGA
CCCATCAGTATTCCGCACGCCCGGAAGATGTCCAATCACTCGGGAGGCAG
CGCCAGTCACAGCAGCAGCTTCGGTCGTGAGGGAAGTATCAGGGAGAAAG
AGATGTCTCTTGCTCAGGATCGTCTGGACCGCTGGGGCACTCGCGCCACG
GGGGGTACTGAACGAGCCGAGCGAGAGATGGGGCTAGGTGATGAGGTCAA
TATGGGATTGAGCTGAGCTACTGAGTCATGGAGCAGGAGGTGAAGCACAC
TGCGACTGGTGGCATCTCAAGAGAATGGCATTTTTTTTATTCAGAGCGGA
CTTGTTATTAATGATTTCGGGCTTTTATTTTGCGTCAGGCGGACGGGTGT
TTTGGGTACTTCCTTTCTTAGCTTATATTCTTATTCTGTGCAGTTTAACG
CCTTGACGAAACGGAGATACCCTTGTTTACCCAAGAGAAGATCGAACTTG
AAGGCTAAATGCTCGGAATAGTGTGCGGTAGTTGACGATTTCTAAGACTG
GTAACAGTAGTACCCGAAGTGTATTTCGGTG back to topCoding sequence (CDS) from alignment at ch2:930897..933477- >KJC3_001874-T3 ID=KJC3_001874-T3|Name=KJC3_001874-T3|organism=Aspergillus niger KJC3|type=CDS|length=3816bp|location=Sequence derived from alignment at ch2:930897..933477- (Aspergillus niger KJC3)
AAGATATTCCGTGGATAGATTCCATGGCCCCATCATCATCCACGCAGGAC
CATGCTGACTCTCAGCCTCCGACGGTCGCTGCTTTCTCCCCCACCACCAT
CTCAGGCTCGTCCGTGACATCGAGACAGCGCTCCAGCATCATCGTGCATC
GCAAATCGCCGCTACTGGTGGCCACGCCCCCTCAGATCACCCGGGCATTG
GCCTACTCGCATCCGTTTATTCTCCCCTTGAACAAGCTCGTTGGATTGCT
CACATGGACGACCGGAGACGGTTGGCAGAGCTTCCTGCTGGTAGCGGGAT
TCTGGACGCTGGTTCTCTATGGCGACGTGATCGTTACTTGGACCGGGCCA
CTCCTTGTGGTCATTAGCCTTATTCTGGGCATGTACTGGAGACGCTACTC
CCCGCTGTCATCGAGGGCTCACTTGAGTGAGAAGCAAGGCCATCAGAGGG
CTGCTTCGGAGACATTTCCCCATCGGCATGAAACGTTGGACGAAATAGTC
GAGACGCTACGGACATTTACCACACGTTGCAATATTCTCCTGGAGCCACT
CGTTGAATTTACCGACTTCTTATCCACGCAGAGGACGGCGACTTCTGCCA
CTACCCGACCAGCTCTGACGACATTATTCTTTCGAATCCTCTTCGTGACT
CCAATTTGGATCGCCTTGACTCTTCCGCCGTTGTATCTGATCACCACTCG
CCGAGTCATCATGACACTTGGCACCATCATTCTCACCTATCACTCTCGCC
CGGCAAGAGTATCTCGTGTCATTCTTTGGCGATCGTTAACAATCCGCCGG
GTGTGCTCTATAATTACGGGGCTATCCTTCTCTTCTACTGTTGATAAGGC
GCAGTCGCTGTTAATGCAGAGCCAGGGCCATGCAATGAGCATTGCGACAA
GACGTCGAGGAGACTCCTCCGGTGTACGATTTACCTTTGTCATCTATGAA
AACCAACGTCGTTGGCTTGGGATCGGCTGGACGTACTCTCTGTTCCCTTC
CGAGCGAGCTGCTTGGACAGACGAGCATTTAAATCACGTCCCGTCGAAGG
AGGAATTCGAGTTACCCGGTGTCGCAAACGGCAATGCTCAGTGGCGCTGG
GTCGAAGGGAGTGACTGGCGTATTGAAGGGGCCGACGAGTCAGGAAAGTC
GGATGCCAAAGCCGATGGCGGAGGCTGGGTCTACTATGACAATAAGGTGG
GACACATTGTTTCCCATTTTCTGACAAATGTCCAGGTGCCAGGGTTACTA
ACAGCATGGGAACAGTGGAATGACGGTCGTCGTGGCCAGGATGGTTGGGA
TCGATACACCCGTCGTCGGAAGTGGTGTCGTGACGCCGAACTAGTTGAGA
TTCCATCAGCGGGCGAGAGCACCTCAGTGGAGACTAAATCGGGGATCGCT
CAATCATTGGAGCAGGAAAAGGCAGCTAACGCCCACGAAAAAGAAATCTC
ATCTACGGTCGACGCCGACGCAGAAAGTCTCGCCCCGTCAACCTCATCCA
AGTCCCGCAAACGACGTTGGTTTGGGAGTACGAAGAGTGTAAGCGACAAA
GCCAGCAGCATCTCCTCTGCTCCACCAACGTCCACGAATAACTCCTCCGT
AGATCTCGGAAAATTAAAGTCCGCCACCCCTACCGGCAGCTACACGCCAA
CTGGGAAGTCCACCGCAACTGCAACCCGACCCATCAGTATTCCGCACGCC
CGGAAGATGTCCAATCACTCGGGAGGCAGCGCCAGTCACAGCAGCAGCTT
CGGTCGTGAGGGAAGTATCAGGGAGAAAGAGATGTCTCTTGCTCAGGATC
GTCTGGACCGCTGGGGCACTCGCGCCACGGGGGGTACTGAACGAGCCGAG
CGAGAGATGGGGCTAGGTGATGAGGTCAATATGGGATTGAGCTGAATGGC
AGCTCTCGAAGATATTCCGTGGATAGATTCCATGGCCCCATCATCATCCA
CGCAGGACCATGCTGACTCTCAGCCTCCGACGGTCGCTGCTTTCTCCCCC
ACCACCATCTCAGGCTCGTCCGTGACATCGAGACAGCGCTCCAGCATCAT
CGTGCATCGCAAATCGCCGCTACTGGTGGCCACGCCCCCTCAGATCACCC
GGGCATTGGCCTACTCGCATCCGTTTATTCTCCCCTTGAACAAGCTCGTT
GGATTGCTCACATGGACGACCGGAGACGGTTGGCAGAGCTTCCTGCTGGT
AGCGGGATTCTGGACGCTGGTTCTCTATGGCGACGTGATCGTTACTTGGA
CCGGGCCACTCCTTGTGGTCATTAGCCTTATTCTGGGCATGTACTGGAGA
CGCTACTCCCCGCTGTCATCGAGGGCTCACTTGAGTGAGAAGCAAGGCCA
TCAGAGGGCTGCTTCGGAGACATTTCCCCATCGGCATGAAACGTTGGACG
AAATAGTCGAGACGCTACGGACATTTACCACACGTTGCAATATTCTCCTG
GAGCCACTCGTTGAATTTACCGACTTCTTATCCACGCAGAGGACGGCGAC
TTCTGCCACTACCCGACCAGCTCTGACGACATTATTCTTTCGAATCCTCT
TCGTGACTCCAATTTGGATCGCCTTGACTCTTCCGCCGTTGTATCTGATC
ACCACTCGCCGAGTCATCATGACACTTGGCACCATCATTCTCACCTATCA
CTCTCGCCCGGCAAGAGTATCTCGTGTCATTCTTTGGCGATCGTTAACAA
TCCGCCGGGTGTGCTCTATAATTACGGGGCTATCCTTCTCTTCTACTGTT
GATAAGGCGCAGTCGCTGTTAATGCAGAGCCAGGGCCATGCAATGAGCAT
TGCGACAAGACGTCGAGGAGACTCCTCCGGTGTACGATTTACCTTTGTCA
TCTATGAAAACCAACGTCGTTGGCTTGGGATCGGCTGGACGTACTCTCTG
TTCCCTTCCGAGCGAGCTGCTTGGACAGACGAGCATTTAAATCACGTCCC
GTCGAAGGAGGAATTCGAGTTACCCGGTGTCGCAAACGGCAATGCTCAGT
GGCGCTGGGTCGAAGGGAGTGACTGGCGTATTGAAGGGGCCGACGAGTCA
GGAAAGTCGGATGCCAAAGCCGATGGCGGAGGCTGGGTCTACTATGACAA
TAAGGTGGGACACATTGTTTCCCATTTTCTGACAAATGTCCAGGTGCCAG
GGTTACTAACAGCATGGGAACAGTGGAATGACGGTCGTCGTGGCCAGGAT
GGTTGGGATCGATACACCCGTCGTCGGAAGTGGTGTCGTGACGCCGAACT
AGTTGAGATTCCATCAGCGGGCGAGAGCACCTCAGTGGAGACTAAATCGG
GGATCGCTCAATCATTGGAGCAGGAAAAGGCAGCTAACGCCCACGAAAAA
GAAATCTCATCTACGGTCGACGCCGACGCAGAAAGTCTCGCCCCGTCAAC
CTCATCCAAGTCCCGCAAACGACGTTGGTTTGGGAGTACGAAGAGTGTAA
GCGACAAAGCCAGCAGCATCTCCTCTGCTCCACCAACGTCCACGAATAAC
TCCTCCGTAGATCTCGGAAAATTAAAGTCCGCCACCCCTACCGGCAGCTA
CACGCCAACTGGGAAGTCCACCGCAACTGCAACCCGACCCATCAGTATTC
CGCACGCCCGGAAGATGTCCAATCACTCGGGAGGCAGCGCCAGTCACAGC
AGCAGCTTCGGTCGTGAGGGAAGTATCAGGGAGAAAGAGATGTCTCTTGC
TCAGGATCGTCTGGACCGCTGGGGCACTCGCGCCACGGGGGGTACTGAAC
GAGCCGAGCGAGAGATGGGGCTAGGTGATGAGGTCAATATGGGATTGAGC
TGAATGGCAGCTCTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001874-T3.utr3p1 | KJC3_001874-T3.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001874-T3.utr5p1 | KJC3_001874-T3.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010482 |
| DBxref | InterPro:IPR006614 |
| DBxref | PFAM:PF06398 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:930897..933477 - |
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