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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1344088..1345493+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001982-T1 ID=KJC3_001982-T1|Name=KJC3_001982-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1406bp|location=Sequence derived from alignment at ch2:1344088..1345493+ (Aspergillus niger KJC3)
CGCCCTCAATCGGGACGCAATAGAATCGACTGCTCGGCCACTAATATTCC
CCAGAGCGGCAAACAGACCTCTACATTATGGCCATTACTATTCTCCCTCC
GGTTGTGGAGGATGTCGACGTTCCCTACTCCGACTCGGAGGACGATGCCA
TGTCCGTGGATTCAGATGGAGGAGTAGATCTCGCAGCGGGAGATGCCACA
AGACCTAACAAGCGTCCTCGCTTAGTGGAAGGAACAAATATTGGCGCAGG
AGTCCTCACACCGGGTGAGATCGTAACAGATGACCCGCAATGGATGAGGT
TGGTTTGGCCCAACTGCTATATTAGCTCAACGCGCAATTGATTGACACTT
GACCGCAGAGGACACGGCACATACACTAACCCACTATCTACCTCCATCAT
TGCTACCGTCGCCGGTACAGTTCAGAAGACCAACAAATTGCTCTCCGTCC
AGCCCCTTCGGGCTCGTTATACGCCTGAGATCGGTGACCTGGTGGTGGGG
CGTATTGTCGAGGTGCAGTCTCGGCGATGGAAGGTTGACGTCGCTGCTCC
CCTTCTCGCACAGCTTCCTCTCTCCGCTATCAACTTGCCCGGTGGTATCC
TGCGTCGACGAACGAGCGCCGATGAACTACAAATCCGAACCTTCTTCAGC
GAGGGTGACCTCGTCGTTGCTGAAGTCCAGACGGTACATTCCGACGGAGG
CGCATCGTTGCACACCCGGTCGCTGAAGTATGGTAAATTGAGGAACGGCG
TGTTCCTTGCGGTGACGGGGACAGGTGGCAGTGGTGCGTCTAGCTCGTCA
GTCAAAGGTACTTCTGGGGCGAGTGCTACGGGCGCGGGAGCCGGAGGTGC
AGCGGGTGCTGGTGGAGTGGTTCGGTCGCGCAGACAGGTCTGGACGATCA
ATACAGCCAATGGGGGTGGGGATGTAGATGTGATTTTGGGAGTTAATGGG
TACATTTGGATTTCGAAGCACGCCGACGGAGCGGCTGCTGCATCGTCGAC
GACGGAAAACGTGTCAATCACGCGCATGGAGGAGATGGTGTCGAGCTCCA
TCTACTCGAGTCAGAACGATGATATTCCGCCACAGACGCGTCGGGAGATC
GCCCGGTTGGCGCAGTGCATTCGGGTGCTTGTCAACGGAGGAGTCCGGGT
GGACGAGGAGACGGTGATGGGAGCCTATGAAGCCAGCTTACAGGTGGATC
TAGAAGTGGGCGATGAGGAAGATGATGAAGATCGGGGCAAGGAGGGACGA
GAATATCTGGAGGGCGACAAGGCTCGCCGAATTCTAGATTTGGTGCTACA
ACAACTATAGGTTTGGATGGCATTTTCGAACCTTTCGATAGTAATTCTCG
TGAGAATAGATACCCCGGCAATGGATAAACATTCCTGCCTCAGCAATGGT
GTGTAC back to topCoding sequence (CDS) from alignment at ch2:1344088..1345493+ >KJC3_001982-T1 ID=KJC3_001982-T1|Name=KJC3_001982-T1|organism=Aspergillus niger KJC3|type=CDS|length=2346bp|location=Sequence derived from alignment at ch2:1344088..1345493+ (Aspergillus niger KJC3)
ATGGCCATTACTATTCTCCCTCCGGTTGTGGAGGATGTCGACGTTCCCTA
CTCCGACTCGGAGGACGATGCCATGTCCGTGGATTCAGATGGAGGAGTAG
ATCTCGCAGCGGGAGATGCCACAAGACCTAACAAGCGTCCTCGCTTAGTG
GAAGGAACAAATATTGGCGCAGGAGTCCTCACACCGGGTGAGATCGTAAC
AGATGACCCGCAATGGATGAGAGGACACGGCACATACACTAACCCACTAT
CTACCTCCATCATTGCTACCGTCGCCGGTACAGTTCAGAAGACCAACAAA
TTGCTCTCCGTCCAGCCCCTTCGGGCTCGTTATACGCCTGAGATCGGTGA
CCTGGTGGTGGGGCGTATTGTCGAGGTGCAGTCTCGGCGATGGAAGGTTG
ACGTCGCTGCTCCCCTTCTCGCACAGCTTCCTCTCTCCGCTATCAACTTG
CCCGGTGGTATCCTGCGTCGACGAACGAGCGCCGATGAACTACAAATCCG
AACCTTCTTCAGCGAGGGTGACCTCGTCGTTGCTGAAGTCCAGACGGTAC
ATTCCGACGGAGGCGCATCGTTGCACACCCGGTCGCTGAAGTATGGTAAA
TTGAGGAACGGCGTGTTCCTTGCGGTGACGGGGACAGGTGGCAGTGGTGC
GTCTAGCTCGTCAGTCAAAGGTACTTCTGGGGCGAGTGCTACGGGCGCGG
GAGCCGGAGGTGCAGCGGGTGCTGGTGGAGTGGTTCGGTCGCGCAGACAG
GTCTGGACGATCAATACAGCCAATGGGGGTGGGGATGTAGATGTGATTTT
GGGAGTTAATGGGTACATTTGGATTTCGAAGCACGCCGACGGAGCGGCTG
CTGCATCGTCGACGACGGAAAACGTGTCAATCACGCGCATGGAGGAGATG
GTGTCGAGCTCCATCTACTCGAGTCAGAACGATGATATTCCGCCACAGAC
GCGTCGGGAGATCGCCCGGTTGGCGCAGTGCATTCGGGTGCTTGTCAACG
GAGGAGTCCGGGTGGACGAGGAGACGGTGATGGGAGCCTATGAAGCCAGC
TTACAGGTGGATCTAGAAGTGGGCGATGAGGAAGATGATGAAGATCGGGG
CAAGGAGGGACGAGAATATCTGGAGGGCGACAAGGCTCGCCGAATTCTAG
ATTTGGTGCTACAACAACTATAGATGGCCATTACTATTCTCCCTCCGGTT
GTGGAGGATGTCGACGTTCCCTACTCCGACTCGGAGGACGATGCCATGTC
CGTGGATTCAGATGGAGGAGTAGATCTCGCAGCGGGAGATGCCACAAGAC
CTAACAAGCGTCCTCGCTTAGTGGAAGGAACAAATATTGGCGCAGGAGTC
CTCACACCGGGTGAGATCGTAACAGATGACCCGCAATGGATGAGAGGACA
CGGCACATACACTAACCCACTATCTACCTCCATCATTGCTACCGTCGCCG
GTACAGTTCAGAAGACCAACAAATTGCTCTCCGTCCAGCCCCTTCGGGCT
CGTTATACGCCTGAGATCGGTGACCTGGTGGTGGGGCGTATTGTCGAGGT
GCAGTCTCGGCGATGGAAGGTTGACGTCGCTGCTCCCCTTCTCGCACAGC
TTCCTCTCTCCGCTATCAACTTGCCCGGTGGTATCCTGCGTCGACGAACG
AGCGCCGATGAACTACAAATCCGAACCTTCTTCAGCGAGGGTGACCTCGT
CGTTGCTGAAGTCCAGACGGTACATTCCGACGGAGGCGCATCGTTGCACA
CCCGGTCGCTGAAGTATGGTAAATTGAGGAACGGCGTGTTCCTTGCGGTG
ACGGGGACAGGTGGCAGTGGTGCGTCTAGCTCGTCAGTCAAAGGTACTTC
TGGGGCGAGTGCTACGGGCGCGGGAGCCGGAGGTGCAGCGGGTGCTGGTG
GAGTGGTTCGGTCGCGCAGACAGGTCTGGACGATCAATACAGCCAATGGG
GGTGGGGATGTAGATGTGATTTTGGGAGTTAATGGGTACATTTGGATTTC
GAAGCACGCCGACGGAGCGGCTGCTGCATCGTCGACGACGGAAAACGTGT
CAATCACGCGCATGGAGGAGATGGTGTCGAGCTCCATCTACTCGAGTCAG
AACGATGATATTCCGCCACAGACGCGTCGGGAGATCGCCCGGTTGGCGCA
GTGCATTCGGGTGCTTGTCAACGGAGGAGTCCGGGTGGACGAGGAGACGG
TGATGGGAGCCTATGAAGCCAGCTTACAGGTGGATCTAGAAGTGGGCGAT
GAGGAAGATGATGAAGATCGGGGCAAGGAGGGACGAGAATATCTGGAGGG
CGACAAGGCTCGCCGAATTCTAGATTTGGTGCTACAACAACTATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001982-T1.utr5p1 | KJC3_001982-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001982-T1.utr3p1 | KJC3_001982-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263IQ5 |
| DBxref | InterPro:IPR036612 |
| DBxref | InterPro:IPR012340 |
| DBxref | InterPro:IPR025721 |
| DBxref | PFAM:PF14382 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1344088..1345493 + |
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