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KJC3_002006-T1, KJC3_002006-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002006-T1
Unique NameKJC3_002006-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1419291..1421442+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002006-T1 ID=KJC3_002006-T1|Name=KJC3_002006-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2152bp|location=Sequence derived from alignment at ch2:1419291..1421442+ (Aspergillus niger KJC3)
CGCGGCCTTCCACCCCTTCCGTCGTCGACTGCTTTTCTTCTTCTCTGCTT
CCATCCCACCATCCCATCCTTGCTTGTCAAATCATCTGGATTTTCTCTCT
TGTCCATCATCCATCAACTACCTCTTATTTCATCTCAGATAATACCACCC
ACCCCTCTTTCATCATGCCTCCCAAGAAGACTTCCACCACCGGCACCACC
AAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGGTATGTTTTGACTGAT
CTTCCACCACCAACCCATCGCGTAGAATTGAAATTAATATCGTTTTTGTC
GCGAATGACTGCTGATTCCATGAATATAGATATGATCAAGGATGCTATCC
TGAATGTGAGTTAATCACGCTGTTCCCGGTGCGCGTTGGGATGAACGGGC
GCTGGGCGGGATCTCCGACCGTGACACGTCTACACGGTGCTTAATTGTCC
CAACGCCCCATCGGGCTCCTGCTTGTTTCACCTCCCAAATGGGTCGCTGA
CTTCTTTCGCAACAGCTGAAAGAGCGCAATGGTAGCAGGTAAGTTGTTTG
GTGCTTCTTCTCCCCCGCCCGATGCAGGGTCCCGTTCGCTGGCGACGTGG
CAACCTATCACCCTGTCCAGGTCGCGATCTCGGCTGACTCGTCTTGTTTC
TCCTCGACTGTAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAACAAT
AAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAACAAGGC
CATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGGTAAGT
CAATCCATCGCGCGCATTTTTTGCCTTCTCATGTCGCAACGGCATTCGAT
ACTCCTGACATGGAAGGATGTGTCTTGACTGCCGTCGTTCGCGTCTTTCA
TTTTTCGGTCTTGTTTTTGTTTGATGGGGCGTGTCAACTGACGCGTCGTC
AACCAGGCCCCTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCC
AAGCCTGCTGCTAAGGTAAGTCTTTATCAATGACATTTCGAACTGATAGA
GAACTATTACTAACACTGTCCATAGAAGACTGCCACCAAGGCTGCTACTG
CTAAGAAGCCTGCTGCCAAGAAGACCGAGAAGACTGAGAAGGCCGAGAAG
GCCGAGAAGCCCAAGACCACCAAGAAGGCCACCACCACTGCTAAGAAGCC
TGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCCTCCACTA
CTGTAAGTTGTAGACTCCTGCCTTCTCACCCCCGGCGGACAGGGTATACT
AATCTTGAAGCAGGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAA
CCACCAAGAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAG
GCCACCAAGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTA
AATCTGTGGGCGCCTGAGACCGTGTTGTCAGCGACCACTTGAACCCGGCT
CCTCCTAGTCGGTGATGTGTGCCTCGGATGATCTTTCTCGAGCTATATTC
CCTTTGTCTCTTCTGCTGTAATTTTTTATTGTCCTTATTTTTTTTTTTTG
TTCCTTGGCCACTTTTTGATCAATGGGGGGAACTGCTTCTGGGATATGCC
GTGGATTGTTTACACTTTCGTTTTCAGTGTCGGTAGGGTTGGCGTCTTGC
GATGGATCTTGCACCGGGATATGTTTTGTGCTTGACTCTTATGTTTTCTT
TTTGGGGCACTTGTCCAAGGGCAGGTGTGACGTTATGCAATGAAACTGCT
TGTCCATTTCTTCAATTGAGTCGAGATGCAGTGTAGCGGGTTCGTAGTCT
TCGTGGTAGAGACGTTCTATAGCAACTATACATGCCACTGGCGCAGTACT
CGGCACCGCAACACAACTCAAGGATTGATCCCCAATGATGCGCAAAAAGA
TTTGCAACTAACGTGATTCCAAGGACCAAATGCACGCCAGTATACACAGT
AGCTCCAAACAGTGGATTTTAAGCTTAATATGTATATGCATCCGCGGATG
TGCTTAATAGGAGGGAAAGAAGTGGACCGGCTCGCTCCCCGGTGGACTGG
ATTCGGATGAGATCACTCACAATCAAAGTAATTAAGTAGTAGGTAACTCG
GA
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Coding sequence (CDS) from alignment at ch2:1419291..1421442+

>KJC3_002006-T1 ID=KJC3_002006-T1|Name=KJC3_002006-T1|organism=Aspergillus niger KJC3|type=CDS|length=4368bp|location=Sequence derived from alignment at ch2:1419291..1421442+ (Aspergillus niger KJC3)
ATGCCTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTC
GAGCCACGCCTCCTACCGTGATATGATCAAGGATGCTATCCTGAATCTGA
AAGAGCGCAATGGTAGCAGCCGCCAGTCGATCAAGAAATATGTTCAGGCG
AACAATAAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAA
CAAGGCCATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGG
GCCCCTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCT
GCTGCTAAGAAGACTGCCACCAAGGCTGCTACTGCTAAGAAGCCTGCTGC
CAAGAAGACCGAGAAGACTGAGAAGGCCGAGAAGGCCGAGAAGCCCAAGA
CCACCAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAG
GCTAACACGGCCAAGCCTCGCAAGTCCTCCACTACTGCTCCCGCCGTTGT
CGACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGA
CGACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCT
GCTGCAAAGGAGACTGCTGCTTAAATGCCTCCCAAGAAGACTTCCACCAC
CGGCACCACCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGATATGA
TCAAGGATGCTATCCTGAATCTGAAAGAGCGCAATGGTAGCAGCCGCCAG
TCGATCAAGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCAC
CAACGCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGA
AGGGCGAGTTCCTTCAGCCCAAGGGCCCCTCCGGACCCGTGAAGCTTGCC
AAGAAGGAAGCTGCCCCCAAGCCTGCTGCTAAGAAGACTGCCACCAAGGC
TGCTACTGCTAAGAAGCCTGCTGCCAAGAAGACCGAGAAGACTGAGAAGG
CCGAGAAGGCCGAGAAGCCCAAGACCACCAAGAAGGCCACCACCACTGCT
AAGAAGCCTGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTC
CTCCACTACTGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCA
CCAAGAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCC
ACCAAGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAAT
GCCTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTCGA
GCCACGCCTCCTACCGTGATATGATCAAGGATGCTATCCTGAATCTGAAA
GAGCGCAATGGTAGCAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAA
CAATAAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAACA
AGGCCATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGGC
CCCTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGC
TGCTAAGAAGACTGCCACCAAGGCTGCTACTGCTAAGAAGCCTGCTGCCA
AGAAGACCGAGAAGACTGAGAAGGCCGAGAAGGCCGAGAAGCCCAAGACC
ACCAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGC
TAACACGGCCAAGCCTCGCAAGTCCTCCACTACTGCTCCCGCCGTTGTCG
ACAAGCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGACG
ACGGCTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCTGC
TGCAAAGGAGACTGCTGCTTAAATGCCTCCCAAGAAGACTTCCACCACCG
GCACCACCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGATATGATC
AAGGATGCTATCCTGAATCTGAAAGAGCGCAATGGTAGCAGCCGCCAGTC
GATCAAGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCACCA
ACGCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGAAG
GGCGAGTTCCTTCAGCCCAAGGGCCCCTCCGGACCCGTGAAGCTTGCCAA
GAAGGAAGCTGCCCCCAAGCCTGCTGCTAAGAAGACTGCCACCAAGGCTG
CTACTGCTAAGAAGCCTGCTGCCAAGAAGACCGAGAAGACTGAGAAGGCC
GAGAAGGCCGAGAAGCCCAAGACCACCAAGAAGGCCACCACCACTGCTAA
GAAGCCTGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCCT
CCACTACTGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACC
AAGAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCAC
CAAGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAATGC
CTCCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTCGAGC
CACGCCTCCTACCGTGATATGATCAAGGATGCTATCCTGAATCTGAAAGA
GCGCAATGGTAGCAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAACA
ATAAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAACAAG
GCCATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGGCCC
CTCCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTG
CTAAGAAGACTGCCACCAAGGCTGCTACTGCTAAGAAGCCTGCTGCCAAG
AAGACCGAGAAGACTGAGAAGGCCGAGAAGGCCGAGAAGCCCAAGACCAC
CAAGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGCTA
ACACGGCCAAGCCTCGCAAGTCCTCCACTACTGCTCCCGCCGTTGTCGAC
AAGCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGACGAC
GGCTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCTGCTG
CAAAGGAGACTGCTGCTTAAATGCCTCCCAAGAAGACTTCCACCACCGGC
ACCACCAAGAAGTCCGGCTCGAGCCACGCCTCCTACCGTGATATGATCAA
GGATGCTATCCTGAATCTGAAAGAGCGCAATGGTAGCAGCCGCCAGTCGA
TCAAGAAATATGTTCAGGCGAACAATAAGATTGCTTCTGCCTCCACCAAC
GCCTTCGACAGCCAGTTCAACAAGGCCATCAAGGCTGGTGTTGAGAAGGG
CGAGTTCCTTCAGCCCAAGGGCCCCTCCGGACCCGTGAAGCTTGCCAAGA
AGGAAGCTGCCCCCAAGCCTGCTGCTAAGAAGACTGCCACCAAGGCTGCT
ACTGCTAAGAAGCCTGCTGCCAAGAAGACCGAGAAGACTGAGAAGGCCGA
GAAGGCCGAGAAGCCCAAGACCACCAAGAAGGCCACCACCACTGCTAAGA
AGCCTGTTGGCAGGCCCAAGGCTAACACGGCCAAGCCTCGCAAGTCCTCC
ACTACTGCTCCCGCCGTTGTCGACAAGCCCAAGGTCCTCAAAACCACCAA
GAGTGGCCGGGTGACTAAGACGACGGCTAAGCCTGCAGAGAAGGCCACCA
AGAAGACCACTAAGAAGGCTGCTGCAAAGGAGACTGCTGCTTAAATGCCT
CCCAAGAAGACTTCCACCACCGGCACCACCAAGAAGTCCGGCTCGAGCCA
CGCCTCCTACCGTGATATGATCAAGGATGCTATCCTGAATCTGAAAGAGC
GCAATGGTAGCAGCCGCCAGTCGATCAAGAAATATGTTCAGGCGAACAAT
AAGATTGCTTCTGCCTCCACCAACGCCTTCGACAGCCAGTTCAACAAGGC
CATCAAGGCTGGTGTTGAGAAGGGCGAGTTCCTTCAGCCCAAGGGCCCCT
CCGGACCCGTGAAGCTTGCCAAGAAGGAAGCTGCCCCCAAGCCTGCTGCT
AAGAAGACTGCCACCAAGGCTGCTACTGCTAAGAAGCCTGCTGCCAAGAA
GACCGAGAAGACTGAGAAGGCCGAGAAGGCCGAGAAGCCCAAGACCACCA
AGAAGGCCACCACCACTGCTAAGAAGCCTGTTGGCAGGCCCAAGGCTAAC
ACGGCCAAGCCTCGCAAGTCCTCCACTACTGCTCCCGCCGTTGTCGACAA
GCCCAAGGTCCTCAAAACCACCAAGAGTGGCCGGGTGACTAAGACGACGG
CTAAGCCTGCAGAGAAGGCCACCAAGAAGACCACTAAGAAGGCTGCTGCA
AAGGAGACTGCTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
GO:0000786nucleosome
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002006KJC3_002006Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002006-T1KJC3_002006-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002006-T1.utr5p1KJC3_002006-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002006-T1.exon1KJC3_002006-T1.exon1Aspergillus niger KJC3exon
KJC3_002006-T1.exon2KJC3_002006-T1.exon2Aspergillus niger KJC3exon
KJC3_002006-T1.exon3KJC3_002006-T1.exon3Aspergillus niger KJC3exon
KJC3_002006-T1.exon4KJC3_002006-T1.exon4Aspergillus niger KJC3exon
KJC3_002006-T1.exon5KJC3_002006-T1.exon5Aspergillus niger KJC3exon
KJC3_002006-T1.exon6KJC3_002006-T1.exon6Aspergillus niger KJC3exon
KJC3_002006-T1.exon7KJC3_002006-T1.exon7Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002006-T1.cdsKJC3_002006-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002006-T1.utr3p1KJC3_002006-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR005818
DBxrefInterPro:IPR005819
DBxrefPFAM:PF00538
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1419291..1421442 +
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