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KJC3_002100-T1, KJC3_002100-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002100-T1
Unique NameKJC3_002100-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1672919..1674397+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002100-T1 ID=KJC3_002100-T1|Name=KJC3_002100-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1479bp|location=Sequence derived from alignment at ch2:1672919..1674397+ (Aspergillus niger KJC3)
CCCGACTCCTTCTTTTCCTCGCGACACTTCGACAACTAACCGGTTCAAGT
CGACAAAGCAGCCAAGATGCCTCGCGGACCGTGAGTAACACGCCCAATGT
TGTTCTTACTGCATGCAGCGAGATTACCGGTGGAATTGCGTTTTCACAGG
TCTATCTTCGCTACGGCAGGAGAATTGAAGATTTTGAGGAGCTGAAAACT
AACCACCATGCTCGTACAGTAAGAAGCACCAGAAGCGCCTTAGCGCGCCT
TCTCACTGGCTCCTGGACAAGATGTCCGGAACCTACGCCCCCAAGGCCTC
CCCCGGTCCTCACAAGCTCCGGGACTGCCTGCCCCTGATCGTCTTCATCC
GCAACCGGTACGAGCCATCCAGCGATTACGAAGGAACCGAAAGAGAGGAT
CGGAATAGGAGGACTGACAGGTTTATAGTCTCAAGTACGCCCTTAACGGC
CGTGAGACCAAGGCGATCATGATGCAGCGTCTGATCAAGGTCGACGGCAA
GGTCCGCACCGACCCTACCTACCCCGCTGGTTTCATGGACGTCATCGGCA
TCGAGAAGACCGGCGAGAACTTCCGTCTCATCTACGACACCAAGGGTCGC
TTCACCGTCCACCGCATCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAA
GGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGC
ACGATGCGAGAACGTGAGTGCATACTCTCTACAAGTTCCGCGTCATTCAG
TCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACGACAGAACTAGAATC
GCAGTTCTTTGCTGGAACACAGTAAGGAGCCGCAACTTCAGAACAAAGTG
TGCTAACAAGGGCTTTTTTATAGCATCCGTTACCCCGACCCCGCCATCAA
GGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGATCGCCGACT
TCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTGGTCGTAAC
ATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGATGGTGGTTT
CAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGCCACCCGTG
AGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCTCCCTGCCC
AAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGACCGCCGCCG
TGCCCTCCAGTAGATGTGGCATGGTAAGTGATGTAGGCTGCCGGAAAAAT
AAAAGCGTTGCAAAATTCCGCTGTGGCGATGACATCTTGTCTTGCTTTGT
GGACCTGTATGACGCCGGTTACGATAATTATATGAAGCGTTATCCAGAAC
AAAAAAAGAAAGAATTGTCTACAGGACACAAAGTTACACCTGTTACTGTA
CCGTAGACTTGTACACTAAAGCAAGGTCAAGATGCCAAGTCTGTCTACCT
ATGATAGTATGATACCATTGTTTCTGAAG
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Coding sequence (CDS) from alignment at ch2:1672919..1674397+

>KJC3_002100-T1 ID=KJC3_002100-T1|Name=KJC3_002100-T1|organism=Aspergillus niger KJC3|type=CDS|length=1170bp|location=Sequence derived from alignment at ch2:1672919..1674397+ (Aspergillus niger KJC3)
ATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGCACCGACCCTAC
CTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAAGACCGGCGAGA
ACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCGTCCACCGCATC
CAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAGCGTGTTCAGCT
CGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGAGAACCATCC
GTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTGAAGATCGACATT
GCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACACTGGTGTTGTCGC
CATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTGTCGTTACCCACC
GTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATCAAGGACGCTATT
GACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGTCATCGGTCAGGA
CAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCAAGCTCTCCATCG
CTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAGATGATGCAGCGTCTG
ATCAAGGTCGACGGCAAGGTCCGCACCGACCCTACCTACCCCGCTGGTTT
CATGGACGTCATCGGCATCGAGAAGACCGGCGAGAACTTCCGTCTCATCT
ACGACACCAAGGGTCGCTTCACCGTCCACCGCATCCAGGCTGAGGAGGCC
GAGTACAAGCTCTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGAT
CCCATTCTTGGTTACGCACGATGCGAGAACCATCCGTTACCCCGACCCCG
CCATCAAGGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGATC
GCCGACTTCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTGG
TCGTAACATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGATG
GTGGTTTCAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGCC
ACCCGTGAGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCTC
CCTGCCCAAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGACC
GCCGCCGTGCCCTCCAGTAG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS4KJC3_002100Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002100-T1KJC3_002100-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002100-T1.utr5p1KJC3_002100-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_002100-T1.utr5p2KJC3_002100-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002100-T1.exon1KJC3_002100-T1.exon1Aspergillus niger KJC3exon
KJC3_002100-T1.exon2KJC3_002100-T1.exon2Aspergillus niger KJC3exon
KJC3_002100-T1.exon3KJC3_002100-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002100-T1.cdsKJC3_002100-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002100-T1.utr3p1KJC3_002100-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR041982
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR032277
DBxrefInterPro:IPR013845
DBxrefInterPro:IPR038237
DBxrefPFAM:PF00900
DBxrefPFAM:PF16121
Product40S ribosomal protein S4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1672919..1674397 +
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