|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1846221..1848121- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002163-T1 ID=KJC3_002163-T1|Name=KJC3_002163-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1901bp|location=Sequence derived from alignment at ch2:1846221..1848121- (Aspergillus niger KJC3)
GACCCTATAAAACCCCTGGATGTAATCGCCCGACTTCGTTGAAATGTCAG
TCACCCCTACCTTGCCTGAAAAGTTCATTTCTGGAATTCCGAAACCCCAA
GTACAAAGCCCTACCTTGACAACCGTCACCCCATCCAAACATGGCGATGA
CAACGTGGGAGCATAGAGCCAAGAGCAAGCAAGCTCAGACCTCAGCAGCG
ATTCCACCAGAATGGACATTACCAGCCGATATACTTCTCGACTCCTCGGC
GAACGTCCTCGATGTGCCCAGGACCTGTGGGCTCCTGACCGAGAGAGAAA
TCCAGATTACCGAAGACTATGATGCCACGGCATTACTTGAAAAGTTGGCT
ACCGGAGAGTTCAGCTCTGTCGAGGTCACAACAGCATTCTGCAAGCGGGC
TGCAATTGCGCAGCAGTTGACCTGCTGCTTGACGGAAATCTTCTTCGACA
AAGCACTAGCCCGAGCAAAGCAGCTCGACGAAATTCTGGCTCAAACTGGG
GTAACAACCGGGCCACTGCATGGCCTGCCCATAAGTATCAAGGAGTCGTT
CAATGTCCCTGGAGTTCCGACTACACTGGGATTCGTTGGATTTCTCGACC
GGGCCCCATCATCCACGAGTTCCGCCTTGGTTGAAATCCTGAACAATTAT
GGGGCGGTTCTATATGTGAAGACCAATGTCCCCCAGACAATGATGACTCC
GGACTCCCATAACAATGTCTTCGGTCGGGTGCTCAACCCGCACGGACGGA
GCCTGACCGCTGGAGGCAGCAGTGGCGGAGAGGGAGCATTGGTGGCGATG
AGGGGCTCAGTCCTCGGCGTGGGGACAGATATCGCCGGCTCCATTCGCAT
CCCCGCCCTCTGCTGTGGTGTTTTTGGTTTCAAACCCACGGCTTGCCGTA
TCCCATATGCAGGTCAAACGTCTGCCGGGCGGCCGGGTATGACGGGCATC
CTGCCGTCCGCCGGGCCCTTGTGCCATTCCATCCGCGATGCAGAACTCTT
TCTCAAAGTTGTCCTCAACTCGAGGCCTGCCGATCTGGATGATTATGCAC
TCGACGTTCCATGGTCCCCTGCTCCGCAAAAGGAGAGGCTTACTATTGGG
CTCCTGCCCGAGGACCCGTCGTTCCCGCTTCATCCACCGATGCGACGTAC
CCTGAACGCCGCAGTGAAGGCGCTGACTACAGCCGGACACCGGGTTATCG
ACCTCTCAGGACAGGCTCCGTCCTTCTCCGATGCATGTTCCCTGGCATTG
CGATATTTCGGCCTGGACCCGGATCGAACTGCACTGCGCCACATAACGCA
GGCGGGGGAACCTTTCATTCCCTCGCTCAAATTCACCTATGATCTCAATG
AGCCGACACGGGAGCCCACCTTGAAGGATCTATTTGAATTAAATGTCGCC
CGTGGTCAGCTCGCAAGCCAGGCACGAAAGCTCTTTGTTGATAATAAGCT
TGATCTGTTCCTGGGCGCTGCTTATCAAAGCACATCGGTTCCCCATGATA
CCTACGGTATTCCGGTATATACCGTGCTTTGGAACCTGATTAATGTGGGT
ATCCCACACTGCCTTTCTTGTTTTCTTTTTCTTTTTTGTTTTCCCCCCCT
TCTTTCTGCTCCAATTGCATCGGGTACCTGCTAATTATGCACTAGTATCC
GGCGTGCGTTATTCCATTTGGGCAGGCCAACAAGGTAGAGGACGCAGCGT
ATAGCCGCGACGTCTCCTATGTGCCAGACTGTAAGTTGCGCCCCTCAATT
GGTCTCGCTCAGTCTACTAACTACTGTAGATCGGCCAGAGGAAATTGAAG
GCGCACCGTGTCACATCCATTTGATAGGCAGACCGATGGCGGACGAAAAA
TTGGTCCAGGATGCGAAGACTATAAGCACCGTGATGAGTGATATCTCTTG
A back to topCoding sequence (CDS) from alignment at ch2:1846221..1848121- >KJC3_002163-T1 ID=KJC3_002163-T1|Name=KJC3_002163-T1|organism=Aspergillus niger KJC3|type=CDS|length=4833bp|location=Sequence derived from alignment at ch2:1846221..1848121- (Aspergillus niger KJC3)
ATCGGCCAGAGGAAATTGAAGGCGCACCGTGTCACATCCATTTGATAGGC
AGACCGATGGCGGACGAAAAATTGGTCCAGGATGCGAAGACTATAAGCAC
CGTGATGAGTGATATCTCTTGATATCCGGCGTGCGTTATTCCATTTGGGC
AGGCCAACAAGGTAGAGGACGCAGCGTATAGCCGCGACGTCTCCTATGTG
CCAGACTATGGCGATGACAACGTGGGAGCATAGAGCCAAGAGCAAGCAAG
CTCAGACCTCAGCAGCGATTCCACCAGAATGGACATTACCAGCCGATATA
CTTCTCGACTCCTCGGCGAACGTCCTCGATGTGCCCAGGACCTGTGGGCT
CCTGACCGAGAGAGAAATCCAGATTACCGAAGACTATGATGCCACGGCAT
TACTTGAAAAGTTGGCTACCGGAGAGTTCAGCTCTGTCGAGGTCACAACA
GCATTCTGCAAGCGGGCTGCAATTGCGCAGCAGTTGACCTGCTGCTTGAC
GGAAATCTTCTTCGACAAAGCACTAGCCCGAGCAAAGCAGCTCGACGAAA
TTCTGGCTCAAACTGGGGTAACAACCGGGCCACTGCATGGCCTGCCCATA
AGTATCAAGGAGTCGTTCAATGTCCCTGGAGTTCCGACTACACTGGGATT
CGTTGGATTTCTCGACCGGGCCCCATCATCCACGAGTTCCGCCTTGGTTG
AAATCCTGAACAATTATGGGGCGGTTCTATATGTGAAGACCAATGTCCCC
CAGACAATGATGACTCCGGACTCCCATAACAATGTCTTCGGTCGGGTGCT
CAACCCGCACGGACGGAGCCTGACCGCTGGAGGCAGCAGTGGCGGAGAGG
GAGCATTGGTGGCGATGAGGGGCTCAGTCCTCGGCGTGGGGACAGATATC
GCCGGCTCCATTCGCATCCCCGCCCTCTGCTGTGGTGTTTTTGGTTTCAA
ACCCACGGCTTGCCGTATCCCATATGCAGGTCAAACGTCTGCCGGGCGGC
CGGGTATGACGGGCATCCTGCCGTCCGCCGGGCCCTTGTGCCATTCCATC
CGCGATGCAGAACTCTTTCTCAAAGTTGTCCTCAACTCGAGGCCTGCCGA
TCTGGATGATTATGCACTCGACGTTCCATGGTCCCCTGCTCCGCAAAAGG
AGAGGCTTACTATTGGGCTCCTGCCCGAGGACCCGTCGTTCCCGCTTCAT
CCACCGATGCGACGTACCCTGAACGCCGCAGTGAAGGCGCTGACTACAGC
CGGACACCGGGTTATCGACCTCTCAGGACAGGCTCCGTCCTTCTCCGATG
CATGTTCCCTGGCATTGCGATATTTCGGCCTGGACCCGGATCGAACTGCA
CTGCGCCACATAACGCAGGCGGGGGAACCTTTCATTCCCTCGCTCAAATT
CACCTATGATCTCAATGAGCCGACACGGGAGCCCACCTTGAAGGATCTAT
TTGAATTAAATGTCGCCCGTGGTCAGCTCGCAAGCCAGGCACGAAAGCTC
TTTGTTGATAATAAGCTTGATCTGTTCCTGGGCGCTGCTTATCAAAGCAC
ATCGGTTCCCCATGATACCTACGGTATTCCGGTATATACCGTGCTTTGGA
ACCTGATTAATATCGGCCAGAGGAAATTGAAGGCGCACCGTGTCACATCC
ATTTGATAGGCAGACCGATGGCGGACGAAAAATTGGTCCAGGATGCGAAG
ACTATAAGCACCGTGATGAGTGATATCTCTTGATATCCGGCGTGCGTTAT
TCCATTTGGGCAGGCCAACAAGGTAGAGGACGCAGCGTATAGCCGCGACG
TCTCCTATGTGCCAGACTATGGCGATGACAACGTGGGAGCATAGAGCCAA
GAGCAAGCAAGCTCAGACCTCAGCAGCGATTCCACCAGAATGGACATTAC
CAGCCGATATACTTCTCGACTCCTCGGCGAACGTCCTCGATGTGCCCAGG
ACCTGTGGGCTCCTGACCGAGAGAGAAATCCAGATTACCGAAGACTATGA
TGCCACGGCATTACTTGAAAAGTTGGCTACCGGAGAGTTCAGCTCTGTCG
AGGTCACAACAGCATTCTGCAAGCGGGCTGCAATTGCGCAGCAGTTGACC
TGCTGCTTGACGGAAATCTTCTTCGACAAAGCACTAGCCCGAGCAAAGCA
GCTCGACGAAATTCTGGCTCAAACTGGGGTAACAACCGGGCCACTGCATG
GCCTGCCCATAAGTATCAAGGAGTCGTTCAATGTCCCTGGAGTTCCGACT
ACACTGGGATTCGTTGGATTTCTCGACCGGGCCCCATCATCCACGAGTTC
CGCCTTGGTTGAAATCCTGAACAATTATGGGGCGGTTCTATATGTGAAGA
CCAATGTCCCCCAGACAATGATGACTCCGGACTCCCATAACAATGTCTTC
GGTCGGGTGCTCAACCCGCACGGACGGAGCCTGACCGCTGGAGGCAGCAG
TGGCGGAGAGGGAGCATTGGTGGCGATGAGGGGCTCAGTCCTCGGCGTGG
GGACAGATATCGCCGGCTCCATTCGCATCCCCGCCCTCTGCTGTGGTGTT
TTTGGTTTCAAACCCACGGCTTGCCGTATCCCATATGCAGGTCAAACGTC
TGCCGGGCGGCCGGGTATGACGGGCATCCTGCCGTCCGCCGGGCCCTTGT
GCCATTCCATCCGCGATGCAGAACTCTTTCTCAAAGTTGTCCTCAACTCG
AGGCCTGCCGATCTGGATGATTATGCACTCGACGTTCCATGGTCCCCTGC
TCCGCAAAAGGAGAGGCTTACTATTGGGCTCCTGCCCGAGGACCCGTCGT
TCCCGCTTCATCCACCGATGCGACGTACCCTGAACGCCGCAGTGAAGGCG
CTGACTACAGCCGGACACCGGGTTATCGACCTCTCAGGACAGGCTCCGTC
CTTCTCCGATGCATGTTCCCTGGCATTGCGATATTTCGGCCTGGACCCGG
ATCGAACTGCACTGCGCCACATAACGCAGGCGGGGGAACCTTTCATTCCC
TCGCTCAAATTCACCTATGATCTCAATGAGCCGACACGGGAGCCCACCTT
GAAGGATCTATTTGAATTAAATGTCGCCCGTGGTCAGCTCGCAAGCCAGG
CACGAAAGCTCTTTGTTGATAATAAGCTTGATCTGTTCCTGGGCGCTGCT
TATCAAAGCACATCGGTTCCCCATGATACCTACGGTATTCCGGTATATAC
CGTGCTTTGGAACCTGATTAATATCGGCCAGAGGAAATTGAAGGCGCACC
GTGTCACATCCATTTGATAGGCAGACCGATGGCGGACGAAAAATTGGTCC
AGGATGCGAAGACTATAAGCACCGTGATGAGTGATATCTCTTGATATCCG
GCGTGCGTTATTCCATTTGGGCAGGCCAACAAGGTAGAGGACGCAGCGTA
TAGCCGCGACGTCTCCTATGTGCCAGACTATGGCGATGACAACGTGGGAG
CATAGAGCCAAGAGCAAGCAAGCTCAGACCTCAGCAGCGATTCCACCAGA
ATGGACATTACCAGCCGATATACTTCTCGACTCCTCGGCGAACGTCCTCG
ATGTGCCCAGGACCTGTGGGCTCCTGACCGAGAGAGAAATCCAGATTACC
GAAGACTATGATGCCACGGCATTACTTGAAAAGTTGGCTACCGGAGAGTT
CAGCTCTGTCGAGGTCACAACAGCATTCTGCAAGCGGGCTGCAATTGCGC
AGCAGTTGACCTGCTGCTTGACGGAAATCTTCTTCGACAAAGCACTAGCC
CGAGCAAAGCAGCTCGACGAAATTCTGGCTCAAACTGGGGTAACAACCGG
GCCACTGCATGGCCTGCCCATAAGTATCAAGGAGTCGTTCAATGTCCCTG
GAGTTCCGACTACACTGGGATTCGTTGGATTTCTCGACCGGGCCCCATCA
TCCACGAGTTCCGCCTTGGTTGAAATCCTGAACAATTATGGGGCGGTTCT
ATATGTGAAGACCAATGTCCCCCAGACAATGATGACTCCGGACTCCCATA
ACAATGTCTTCGGTCGGGTGCTCAACCCGCACGGACGGAGCCTGACCGCT
GGAGGCAGCAGTGGCGGAGAGGGAGCATTGGTGGCGATGAGGGGCTCAGT
CCTCGGCGTGGGGACAGATATCGCCGGCTCCATTCGCATCCCCGCCCTCT
GCTGTGGTGTTTTTGGTTTCAAACCCACGGCTTGCCGTATCCCATATGCA
GGTCAAACGTCTGCCGGGCGGCCGGGTATGACGGGCATCCTGCCGTCCGC
CGGGCCCTTGTGCCATTCCATCCGCGATGCAGAACTCTTTCTCAAAGTTG
TCCTCAACTCGAGGCCTGCCGATCTGGATGATTATGCACTCGACGTTCCA
TGGTCCCCTGCTCCGCAAAAGGAGAGGCTTACTATTGGGCTCCTGCCCGA
GGACCCGTCGTTCCCGCTTCATCCACCGATGCGACGTACCCTGAACGCCG
CAGTGAAGGCGCTGACTACAGCCGGACACCGGGTTATCGACCTCTCAGGA
CAGGCTCCGTCCTTCTCCGATGCATGTTCCCTGGCATTGCGATATTTCGG
CCTGGACCCGGATCGAACTGCACTGCGCCACATAACGCAGGCGGGGGAAC
CTTTCATTCCCTCGCTCAAATTCACCTATGATCTCAATGAGCCGACACGG
GAGCCCACCTTGAAGGATCTATTTGAATTAAATGTCGCCCGTGGTCAGCT
CGCAAGCCAGGCACGAAAGCTCTTTGTTGATAATAAGCTTGATCTGTTCC
TGGGCGCTGCTTATCAAAGCACATCGGTTCCCCATGATACCTACGGTATT
CCGGTATATACCGTGCTTTGGAACCTGATTAAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002163-T1.utr5p1 | KJC3_002163-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020556 |
| DBxref | InterPro:IPR023631 |
| DBxref | InterPro:IPR036928 |
| DBxref | PFAM:PF01425 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1846221..1848121 - |
|
