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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2120830..2122732+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002269-T1 ID=KJC3_002269-T1|Name=KJC3_002269-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1903bp|location=Sequence derived from alignment at ch2:2120830..2122732+ (Aspergillus niger KJC3)
CGAATTTCTGCGCTTTACTTATTTGCATTACTCTGCTTTGTTTTTTTCCC
TCGGACAAAAACAATCACAGCCATGGCTCCGAAATCTCTGGCGGAACAGA
TGGCCGAGTTGGAGGATTTGACTCCTCGTGGTAATTATCCCAATCTCAGG
TGATACTTGTGTTCGGTGGACTTGGTTCTGATTGTGTTGTTTTCTAGACT
ACGACCCTGAGGATCTTGATCGCGGTAACCAGGATAGTGATGAGGAGGGT
GCCGGTGCTAAGGATGAGAATGCGGGGAGGGAGCATTATCAGGCTGTTGG
GTAAGTTTTCCTTCATTTCTCGATTTGTTTATTGGGTGGTGTGTGGTGTT
TATGGAGGGCGTTGTCTAAATCATTGTGTCATTATAGGAAAGCGAAGCTT
CGCAAGCAGGACCCGATCTCTCTCGGAAAGCAATATGCTGGGTCGAAAGT
AAGTCGCGCGGCGTTGGAGGCTGATAGTGATGATGATCCGTTTGCGGCGC
GATCGGGCGATGAGGATGAGGATGATGACGAGGAGGACGAGGAGGAAGAT
GAAGATGAAGATCTGGAGCTGGGTAGCGACGAGGATGATGAGGACATCTC
GGAGAGTGAAGAGGAGGAGGAGGAGCGCCCATCCAAGTCCGCAAAGAAGG
GAAAGAAGCAGGTCGAGCTGGACGACATGGACACCGACGAGTCGGACGAC
CTTGAAGGCAGCGAGGGATCTTTCGACGAGGACGAGATGCCGTCTGACGA
AGATGAGGAGGATGAAGACGACGAGTCGGATGACGAGGACGACGACGAAG
AATCAGAATCCGACTCCGACTCCAAACCGCGCAAACCCACCGACGACCGC
GACGAACTCCGCCGCCTCATGGCGACCGACCAAAAGACCATCGCCGCGAG
CATCTCCCAAGCGGCCAAAGCCGACGCCGCGAAAGGTAAAGCCGTGAAGC
AACAGCGCGCCACCTTCGACGCCCTCCTCAACACCCGAATCAAGCTCCAA
AAGGGCCTCACAGCCATCAACCAGCTCTCCCTCGCCGCCACCTCCCCCGA
CGCCGACTCCGAAGAAGCCATCACCTCCGCCGAATCCGCCGCTCTCGCCC
TCTGGTCCACATTGGAAGACTTGCGCGTTGCGCTCGCCGACGCCCACAAC
ACCAACGCAGAGGAACCGAAGAAGCGCAAGCGCGTAGACACCGACACGCC
CACCGCAACTCTCTGGACGCGCATGACCGATCTTGAATCCGCCGCGATTA
CCCACCGCCGCACCATCCTCGACAAATGGTCCGCGAAGGTCCGCGGCTCG
ACCGCCACGACGGCCGCAAACTCACGCGGCAAGCTCCTCAACCCGTCCGG
CTCGGGCGCGCAATCCATCACCGCCGTCCTGGACGCCCAGGTCGCGACTG
AAACGGGCGACCATTCCCGCGCCGCTAAGCGCGCCCGTCAAGACACTACT
ACCACTACCACTACTGAGGGCGGAGCTACTACTCCCATCTACGACGACAC
CGTCTTCTACCAATCCCTACTGCGCGATCTCGTCGAGCAGCGCATGGCTT
CCTCCGACGCGATCACGAACGGCCTCGATACCCTGCACATACAACTGCCG
ACGCGCGGCGGGGCGGCGATCCACCCTGTGACGGGGATGCGGAAGGATAA
GGTCAAGCGGGATGTGGATACGCGGGCGTCGAAGGGCCGGAAGATGCGGT
TCGATGTGCATGAGAAGTTGCAGAATTTTATGGCGCCGGAGGATCGCGGA
AGCTGGACGAAGCATGCGCGCGAGGAGTTCTTTGCGTCGTTGTTGGGCAA
GACGGCGAGTGGGTTATTGAGGGAGGAGAGTGGTGATGAGGAGAGTGGCG
CGGAGAGTGAGGAGGATCGGGAGGAGGGTGGATTGAGGCTTTTTAGGAGC
TAG back to topCoding sequence (CDS) from alignment at ch2:2120830..2122732+ >KJC3_002269-T1 ID=KJC3_002269-T1|Name=KJC3_002269-T1|organism=Aspergillus niger KJC3|type=CDS|length=5031bp|location=Sequence derived from alignment at ch2:2120830..2122732+ (Aspergillus niger KJC3)
ATGGCTCCGAAATCTCTGGCGGAACAGATGGCCGAGTTGGAGGATTTGAC
TCCTCGTGACTACGACCCTGAGGATCTTGATCGCGGTAACCAGGATAGTG
ATGAGGAGGGTGCCGGTGCTAAGGATGAGAATGCGGGGAGGGAGCATTAT
CAGGCTGTTGGGAAAGCGAAGCTTCGCAAGCAGGACCCGATCTCTCTCGG
AAAGCAATATGCTGGGTCGAAAGTAAGTCGCGCGGCGTTGGAGGCTGATA
GTGATGATGATCCGTTTGCGGCGCGATCGGGCGATGAGGATGAGGATGAT
GACGAGGAGGACGAGGAGGAAGATGAAGATGAAGATCTGGAGCTGGGTAG
CGACGAGGATGATGAGGACATCTCGGAGAGTGAAGAGGAGGAGGAGGAGC
GCCCATCCAAGTCCGCAAAGAAGGGAAAGAAGCAGGTCGAGCTGGACGAC
ATGGACACCGACGAGTCGGACGACCTTGAAGGCAGCGAGGGATCTTTCGA
CGAGGACGAGATGCCGTCTGACGAAGATGAGGAGGATGAAGACGACGAGT
CGGATGACGAGGACGACGACGAAGAATCAGAATCCGACTCCGACTCCAAA
CCGCGCAAACCCACCGACGACCGCGACGAACTCCGCCGCCTCATGGCGAC
CGACCAAAAGACCATCGCCGCGAGCATCTCCCAAGCGGCCAAAGCCGACG
CCGCGAAAGGTAAAGCCGTGAAGCAACAGCGCGCCACCTTCGACGCCCTC
CTCAACACCCGAATCAAGCTCCAAAAGGGCCTCACAGCCATCAACCAGCT
CTCCCTCGCCGCCACCTCCCCCGACGCCGACTCCGAAGAAGCCATCACCT
CCGCCGAATCCGCCGCTCTCGCCCTCTGGTCCACATTGGAAGACTTGCGC
GTTGCGCTCGCCGACGCCCACAACACCAACGCAGAGGAACCGAAGAAGCG
CAAGCGCGTAGACACCGACACGCCCACCGCAACTCTCTGGACGCGCATGA
CCGATCTTGAATCCGCCGCGATTACCCACCGCCGCACCATCCTCGACAAA
TGGTCCGCGAAGGTCCGCGGCTCGACCGCCACGACGGCCGCAAACTCACG
CGGCAAGCTCCTCAACCCGTCCGGCTCGGGCGCGCAATCCATCACCGCCG
TCCTGGACGCCCAGGTCGCGACTGAAACGGGCGACCATTCCCGCGCCGCT
AAGCGCGCCCGTCAAGACACTACTACCACTACCACTACTGAGGGCGGAGC
TACTACTCCCATCTACGACGACACCGTCTTCTACCAATCCCTACTGCGCG
ATCTCGTCGAGCAGCGCATGGCTTCCTCCGACGCGATCACGAACGGCCTC
GATACCCTGCACATACAACTGCCGACGCGCGGCGGGGCGGCGATCCACCC
TGTGACGGGGATGCGGAAGGATAAGGTCAAGCGGGATGTGGATACGCGGG
CGTCGAAGGGCCGGAAGATGCGGTTCGATGTGCATGAGAAGTTGCAGAAT
TTTATGGCGCCGGAGGATCGCGGAAGCTGGACGAAGCATGCGCGCGAGGA
GTTCTTTGCGTCGTTGTTGGGCAAGACGGCGAGTGGGTTATTGAGGGAGG
AGAGTGGTGATGAGGAGAGTGGCGCGGAGAGTGAGGAGGATCGGGAGGAG
GGTGGATTGAGGCTTTTTAGGAGCTAGATGGCTCCGAAATCTCTGGCGGA
ACAGATGGCCGAGTTGGAGGATTTGACTCCTCGTGACTACGACCCTGAGG
ATCTTGATCGCGGTAACCAGGATAGTGATGAGGAGGGTGCCGGTGCTAAG
GATGAGAATGCGGGGAGGGAGCATTATCAGGCTGTTGGGAAAGCGAAGCT
TCGCAAGCAGGACCCGATCTCTCTCGGAAAGCAATATGCTGGGTCGAAAG
TAAGTCGCGCGGCGTTGGAGGCTGATAGTGATGATGATCCGTTTGCGGCG
CGATCGGGCGATGAGGATGAGGATGATGACGAGGAGGACGAGGAGGAAGA
TGAAGATGAAGATCTGGAGCTGGGTAGCGACGAGGATGATGAGGACATCT
CGGAGAGTGAAGAGGAGGAGGAGGAGCGCCCATCCAAGTCCGCAAAGAAG
GGAAAGAAGCAGGTCGAGCTGGACGACATGGACACCGACGAGTCGGACGA
CCTTGAAGGCAGCGAGGGATCTTTCGACGAGGACGAGATGCCGTCTGACG
AAGATGAGGAGGATGAAGACGACGAGTCGGATGACGAGGACGACGACGAA
GAATCAGAATCCGACTCCGACTCCAAACCGCGCAAACCCACCGACGACCG
CGACGAACTCCGCCGCCTCATGGCGACCGACCAAAAGACCATCGCCGCGA
GCATCTCCCAAGCGGCCAAAGCCGACGCCGCGAAAGGTAAAGCCGTGAAG
CAACAGCGCGCCACCTTCGACGCCCTCCTCAACACCCGAATCAAGCTCCA
AAAGGGCCTCACAGCCATCAACCAGCTCTCCCTCGCCGCCACCTCCCCCG
ACGCCGACTCCGAAGAAGCCATCACCTCCGCCGAATCCGCCGCTCTCGCC
CTCTGGTCCACATTGGAAGACTTGCGCGTTGCGCTCGCCGACGCCCACAA
CACCAACGCAGAGGAACCGAAGAAGCGCAAGCGCGTAGACACCGACACGC
CCACCGCAACTCTCTGGACGCGCATGACCGATCTTGAATCCGCCGCGATT
ACCCACCGCCGCACCATCCTCGACAAATGGTCCGCGAAGGTCCGCGGCTC
GACCGCCACGACGGCCGCAAACTCACGCGGCAAGCTCCTCAACCCGTCCG
GCTCGGGCGCGCAATCCATCACCGCCGTCCTGGACGCCCAGGTCGCGACT
GAAACGGGCGACCATTCCCGCGCCGCTAAGCGCGCCCGTCAAGACACTAC
TACCACTACCACTACTGAGGGCGGAGCTACTACTCCCATCTACGACGACA
CCGTCTTCTACCAATCCCTACTGCGCGATCTCGTCGAGCAGCGCATGGCT
TCCTCCGACGCGATCACGAACGGCCTCGATACCCTGCACATACAACTGCC
GACGCGCGGCGGGGCGGCGATCCACCCTGTGACGGGGATGCGGAAGGATA
AGGTCAAGCGGGATGTGGATACGCGGGCGTCGAAGGGCCGGAAGATGCGG
TTCGATGTGCATGAGAAGTTGCAGAATTTTATGGCGCCGGAGGATCGCGG
AAGCTGGACGAAGCATGCGCGCGAGGAGTTCTTTGCGTCGTTGTTGGGCA
AGACGGCGAGTGGGTTATTGAGGGAGGAGAGTGGTGATGAGGAGAGTGGC
GCGGAGAGTGAGGAGGATCGGGAGGAGGGTGGATTGAGGCTTTTTAGGAG
CTAGATGGCTCCGAAATCTCTGGCGGAACAGATGGCCGAGTTGGAGGATT
TGACTCCTCGTGACTACGACCCTGAGGATCTTGATCGCGGTAACCAGGAT
AGTGATGAGGAGGGTGCCGGTGCTAAGGATGAGAATGCGGGGAGGGAGCA
TTATCAGGCTGTTGGGAAAGCGAAGCTTCGCAAGCAGGACCCGATCTCTC
TCGGAAAGCAATATGCTGGGTCGAAAGTAAGTCGCGCGGCGTTGGAGGCT
GATAGTGATGATGATCCGTTTGCGGCGCGATCGGGCGATGAGGATGAGGA
TGATGACGAGGAGGACGAGGAGGAAGATGAAGATGAAGATCTGGAGCTGG
GTAGCGACGAGGATGATGAGGACATCTCGGAGAGTGAAGAGGAGGAGGAG
GAGCGCCCATCCAAGTCCGCAAAGAAGGGAAAGAAGCAGGTCGAGCTGGA
CGACATGGACACCGACGAGTCGGACGACCTTGAAGGCAGCGAGGGATCTT
TCGACGAGGACGAGATGCCGTCTGACGAAGATGAGGAGGATGAAGACGAC
GAGTCGGATGACGAGGACGACGACGAAGAATCAGAATCCGACTCCGACTC
CAAACCGCGCAAACCCACCGACGACCGCGACGAACTCCGCCGCCTCATGG
CGACCGACCAAAAGACCATCGCCGCGAGCATCTCCCAAGCGGCCAAAGCC
GACGCCGCGAAAGGTAAAGCCGTGAAGCAACAGCGCGCCACCTTCGACGC
CCTCCTCAACACCCGAATCAAGCTCCAAAAGGGCCTCACAGCCATCAACC
AGCTCTCCCTCGCCGCCACCTCCCCCGACGCCGACTCCGAAGAAGCCATC
ACCTCCGCCGAATCCGCCGCTCTCGCCCTCTGGTCCACATTGGAAGACTT
GCGCGTTGCGCTCGCCGACGCCCACAACACCAACGCAGAGGAACCGAAGA
AGCGCAAGCGCGTAGACACCGACACGCCCACCGCAACTCTCTGGACGCGC
ATGACCGATCTTGAATCCGCCGCGATTACCCACCGCCGCACCATCCTCGA
CAAATGGTCCGCGAAGGTCCGCGGCTCGACCGCCACGACGGCCGCAAACT
CACGCGGCAAGCTCCTCAACCCGTCCGGCTCGGGCGCGCAATCCATCACC
GCCGTCCTGGACGCCCAGGTCGCGACTGAAACGGGCGACCATTCCCGCGC
CGCTAAGCGCGCCCGTCAAGACACTACTACCACTACCACTACTGAGGGCG
GAGCTACTACTCCCATCTACGACGACACCGTCTTCTACCAATCCCTACTG
CGCGATCTCGTCGAGCAGCGCATGGCTTCCTCCGACGCGATCACGAACGG
CCTCGATACCCTGCACATACAACTGCCGACGCGCGGCGGGGCGGCGATCC
ACCCTGTGACGGGGATGCGGAAGGATAAGGTCAAGCGGGATGTGGATACG
CGGGCGTCGAAGGGCCGGAAGATGCGGTTCGATGTGCATGAGAAGTTGCA
GAATTTTATGGCGCCGGAGGATCGCGGAAGCTGGACGAAGCATGCGCGCG
AGGAGTTCTTTGCGTCGTTGTTGGGCAAGACGGCGAGTGGGTTATTGAGG
GAGGAGAGTGGTGATGAGGAGAGTGGCGCGGAGAGTGAGGAGGATCGGGA
GGAGGGTGGATTGAGGCTTTTTAGGAGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002269-T1.utr5p1 | KJC3_002269-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262WSH |
| DBxref | InterPro:IPR025160 |
| DBxref | InterPro:IPR012617 |
| DBxref | PFAM:PF08164 |
| DBxref | PFAM:PF13339 |
| Product | rRNA-processing protein bfr2 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2120830..2122732 + |
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