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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2238210..2239237+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002309-T1 ID=KJC3_002309-T1|Name=KJC3_002309-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1028bp|location=Sequence derived from alignment at ch2:2238210..2239237+ (Aspergillus niger KJC3)
CATCTCTATTACTTTATCTGCTACTTTACCATGCTCAAGTATAACAAAGT
CATCGTCTTTGGTGCTACAGGGGATGTAGGCTCGGCTGCCGCTCTGCAAG
CCCACCATGAGGGAGCCACAGTCTCCCTAGCGACACGCAATTTGTCCAAA
CCCATTCCCCAACTCGCTCACATCTCGTTCAAGAAATATCAGGCCGACTT
GACCCAGCCCAGTACCATAACGGCGGCTGTTCGTGATGCTGGCGCCAAGG
CGGCTTTCATATATGGGGTGTTCGACGACCAGGATTTTATGAGAGAGGCT
TTCCACACTCTCAAAGCCGCCGGGGTGGAATTTGTGGTCTTTCTCAGCAG
CTTTCTCATCCTCAGCGATATTCACAACGTGGACCCCTCTGACATCGTTC
CCTGGGAGCACGCCCAGGTGGAGATCGCGCTGGAAGAAGTCTACGGGCGT
GCTTCGTATGTGACCGTACGACCGGCCTTTTACGCTAGCAATTTGTTCCA
CCAAAGGCAGGCCATCCAACAAGGTGAGGTGAAGCTACCCAACCCGGAGG
CGAAATTTGACTTCATCGCCTCGGAGGACATTGGCCAGGTCGCGGGGAAA
ATTCTGGTTCATGGTGCCCAGGAGCATATCGTGCGACTGCTGGGGCCCGA
GCGGATGACTTTAAGGGAGGCCATGGGGATTATCGGGAAGGTCTTGGGTC
ATAAAGTCCAAGTAACTGCAGTCACGCGCGAGGAGGCTGCTGCGCAATTG
GAAGCCGCTGGCGTCCCACCCCAAATGGTTCAGTGGCACCTTCATAATGT
TATCGACCGTGCTGGCTCGTATCTTGAAAGCCCTGAGGCTCTCACGACCG
GTGATAATATTTCAAAATATGCACATCACCCTCCACAACGCTTTGGAGAC
TGGGTGGAGAAACACAAGAGCCGATTCCTGGACTGATCTAGACTTCTACT
GGGGACAGGCAATCCACACTGGTTCTATTGATTCAGTTGGTTATTGAGTC
TGATACTAGCGACCGCCTTTCTTATTAC back to topCoding sequence (CDS) from alignment at ch2:2238210..2239237+ >KJC3_002309-T1 ID=KJC3_002309-T1|Name=KJC3_002309-T1|organism=Aspergillus niger KJC3|type=CDS|length=906bp|location=Sequence derived from alignment at ch2:2238210..2239237+ (Aspergillus niger KJC3)
ATGCTCAAGTATAACAAAGTCATCGTCTTTGGTGCTACAGGGGATGTAGG
CTCGGCTGCCGCTCTGCAAGCCCACCATGAGGGAGCCACAGTCTCCCTAG
CGACACGCAATTTGTCCAAACCCATTCCCCAACTCGCTCACATCTCGTTC
AAGAAATATCAGGCCGACTTGACCCAGCCCAGTACCATAACGGCGGCTGT
TCGTGATGCTGGCGCCAAGGCGGCTTTCATATATGGGGTGTTCGACGACC
AGGATTTTATGAGAGAGGCTTTCCACACTCTCAAAGCCGCCGGGGTGGAA
TTTGTGGTCTTTCTCAGCAGCTTTCTCATCCTCAGCGATATTCACAACGT
GGACCCCTCTGACATCGTTCCCTGGGAGCACGCCCAGGTGGAGATCGCGC
TGGAAGAAGTCTACGGGCGTGCTTCGTATGTGACCGTACGACCGGCCTTT
TACGCTAGCAATTTGTTCCACCAAAGGCAGGCCATCCAACAAGGTGAGGT
GAAGCTACCCAACCCGGAGGCGAAATTTGACTTCATCGCCTCGGAGGACA
TTGGCCAGGTCGCGGGGAAAATTCTGGTTCATGGTGCCCAGGAGCATATC
GTGCGACTGCTGGGGCCCGAGCGGATGACTTTAAGGGAGGCCATGGGGAT
TATCGGGAAGGTCTTGGGTCATAAAGTCCAAGTAACTGCAGTCACGCGCG
AGGAGGCTGCTGCGCAATTGGAAGCCGCTGGCGTCCCACCCCAAATGGTT
CAGTGGCACCTTCATAATGTTATCGACCGTGCTGGCTCGTATCTTGAAAG
CCCTGAGGCTCTCACGACCGGTGATAATATTTCAAAATATGCACATCACC
CTCCACAACGCTTTGGAGACTGGGTGGAGAAACACAAGAGCCGATTCCTG
GACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002309-T1.utr5p1 | KJC3_002309-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002309-T1.utr3p1 | KJC3_002309-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2238210..2239237 + |
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