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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2628265..2630067- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002461-T1 ID=KJC3_002461-T1|Name=KJC3_002461-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1803bp|location=Sequence derived from alignment at ch2:2628265..2630067- (Aspergillus niger KJC3)
ATGCCGCGCAAGAAGGCTGCAGACCGCGTGGGTCCGGTCAAGACCCGAAG
CCGCAGTGGCTGTAAAGAATGCCGCGCCAGTCGAGTCCGCTGCGATCTGA
AGAAACCGATCTGCACCAGGTGCCTTGAGAAGGGCCTAGTATGCTCGACC
CAACTCGTTCTCAAGTGGGAGTCCGAGTTCGTTAGCCGCGGCTTGGCTTT
TGGTAGAGCCGGCGTTTGGAGTAAGGCTCGGGCTGCCGGCGGACTCCCTC
CTCCTCCTGGAAAGTCTTCGGCTTCGTTCCTCCTTCGCGATCAGGAATGG
TGTCCTATTCCCCTTATCGAGTCGTGGGGCTTCGTCAATAGTGGGGTTTC
GACTTTTGAACAGCCTTATGAGGTTAATGTTGCCTGTGATGAGTTGAATG
CTCTTGTCGTCCGGGACAAGGGCAAGAGCCCGGCGCTGGATGACTTGCTA
GATGAGAATCCAGAGTGGTCTTTATCACCCTCATCGTTGTCGTCTCCATT
CTCGATACGTGAGACTTCCGACTACTGCTCGCCTGTCCCACTTGTCTCTC
CGCACCTGACCCCGCCTTTATCGATGTTCCCCAGTCTCTCAGACTCCAAT
CAGGGTCTCCTCTTTGATTACTATCTCCAGCAAGTGTGTCCCCGGACCAC
CGCTAGCTCGAAGCTATCCTCTCCTTTTGCTTCTATCATCCTCCCCTTCT
GCATGTCCGCATCTCCAATCCTATTCAAAGCCATTCAGGCTCTTGGAGCA
TGTCACTGGTCACGCTTCGACTCAACCTACAGTGTCATCGGCCTCCGCCT
CAAATCAGAAGCCCTACGAGGCCTCCGCCACCGTCTTTCAACCGAAGGCT
CCCTCCTCTGCTCCGCAGACCCCGAGGTCCTAGCGATCATGATGATGCTA
TGCCTCTACGAAATCGTCGACAACTGCGACCAACGCTGGACGATCCACTT
AAAAGGCGCCAAAGAATTGATCCGCATCCGCCGGCAGCAACAACAACTAA
CTTCCTCCCGACCCCGTCAATCTCTTGACCCCGTCTCAGCCTTCGCCGAG
CTCTTCTTCGCCTTTCAAGACGTCATGGGCCGCACCGCCTGCGGCGAAGA
AGTCCTCTTCGGATCCGACTACTGGCAAGAAAACAACCGCCACATCGACC
TCTGGATGGGCTGCAGCCCCGAACTTGTCTCCATCCTCTCCTCAATTACA
GAAATGAGCCGCACCAGGCGCCAACTCACCTCCGATGCTGCCCGCAAAGC
ATTCTCTCACCGCGCCGCCTCCCTAGGCCGCAGACTCGAGAACCTCGTTC
AGGAAACAACTGACGACGACAACGACACCGACGACGGAAGTCTTCGCTCC
GCCGCCGAATTGAAACGTCTAGCAGCCGTGCTATACCTCCACTGCGCACT
GTACGGTGCATCGCCATCTACACCACTGGTAATTAACTATGTCCGACGCA
TCCTGCGTCTAGTCTCTGACCTGCTCGACTCCGGCTCCCTCGTCAGCATG
ACCTGGCCTGTGTTCGTAGCGGCGGTCGAGCTGGATCCACTTCATGATGA
GGTCTGGCGTGATGACACCGGCGAGAGCGTGGTATATGGTCGGCCGCTGG
TGTTGCGTGCATTGGCGGCTATGGCGGAATCAAGTGTGTCGAATGTGGCA
AGGACGAGAGCCGTCATTGTGAAGATTTGGCAAGCGAGGGATAGCGATAT
GCTTAAGGGCTCGCCGGTGGATGCAGCGGATGATGGCGTTGCGGGGTGTA
ATGATTGGGAGTGGTATGTTGCGCCGATTAGTACAGCGATGAGTTTGGCT
TGA back to topCoding sequence (CDS) from alignment at ch2:2628265..2630067- >KJC3_002461-T1 ID=KJC3_002461-T1|Name=KJC3_002461-T1|organism=Aspergillus niger KJC3|type=CDS|length=1803bp|location=Sequence derived from alignment at ch2:2628265..2630067- (Aspergillus niger KJC3)
ATGCCGCGCAAGAAGGCTGCAGACCGCGTGGGTCCGGTCAAGACCCGAAG
CCGCAGTGGCTGTAAAGAATGCCGCGCCAGTCGAGTCCGCTGCGATCTGA
AGAAACCGATCTGCACCAGGTGCCTTGAGAAGGGCCTAGTATGCTCGACC
CAACTCGTTCTCAAGTGGGAGTCCGAGTTCGTTAGCCGCGGCTTGGCTTT
TGGTAGAGCCGGCGTTTGGAGTAAGGCTCGGGCTGCCGGCGGACTCCCTC
CTCCTCCTGGAAAGTCTTCGGCTTCGTTCCTCCTTCGCGATCAGGAATGG
TGTCCTATTCCCCTTATCGAGTCGTGGGGCTTCGTCAATAGTGGGGTTTC
GACTTTTGAACAGCCTTATGAGGTTAATGTTGCCTGTGATGAGTTGAATG
CTCTTGTCGTCCGGGACAAGGGCAAGAGCCCGGCGCTGGATGACTTGCTA
GATGAGAATCCAGAGTGGTCTTTATCACCCTCATCGTTGTCGTCTCCATT
CTCGATACGTGAGACTTCCGACTACTGCTCGCCTGTCCCACTTGTCTCTC
CGCACCTGACCCCGCCTTTATCGATGTTCCCCAGTCTCTCAGACTCCAAT
CAGGGTCTCCTCTTTGATTACTATCTCCAGCAAGTGTGTCCCCGGACCAC
CGCTAGCTCGAAGCTATCCTCTCCTTTTGCTTCTATCATCCTCCCCTTCT
GCATGTCCGCATCTCCAATCCTATTCAAAGCCATTCAGGCTCTTGGAGCA
TGTCACTGGTCACGCTTCGACTCAACCTACAGTGTCATCGGCCTCCGCCT
CAAATCAGAAGCCCTACGAGGCCTCCGCCACCGTCTTTCAACCGAAGGCT
CCCTCCTCTGCTCCGCAGACCCCGAGGTCCTAGCGATCATGATGATGCTA
TGCCTCTACGAAATCGTCGACAACTGCGACCAACGCTGGACGATCCACTT
AAAAGGCGCCAAAGAATTGATCCGCATCCGCCGGCAGCAACAACAACTAA
CTTCCTCCCGACCCCGTCAATCTCTTGACCCCGTCTCAGCCTTCGCCGAG
CTCTTCTTCGCCTTTCAAGACGTCATGGGCCGCACCGCCTGCGGCGAAGA
AGTCCTCTTCGGATCCGACTACTGGCAAGAAAACAACCGCCACATCGACC
TCTGGATGGGCTGCAGCCCCGAACTTGTCTCCATCCTCTCCTCAATTACA
GAAATGAGCCGCACCAGGCGCCAACTCACCTCCGATGCTGCCCGCAAAGC
ATTCTCTCACCGCGCCGCCTCCCTAGGCCGCAGACTCGAGAACCTCGTTC
AGGAAACAACTGACGACGACAACGACACCGACGACGGAAGTCTTCGCTCC
GCCGCCGAATTGAAACGTCTAGCAGCCGTGCTATACCTCCACTGCGCACT
GTACGGTGCATCGCCATCTACACCACTGGTAATTAACTATGTCCGACGCA
TCCTGCGTCTAGTCTCTGACCTGCTCGACTCCGGCTCCCTCGTCAGCATG
ACCTGGCCTGTGTTCGTAGCGGCGGTCGAGCTGGATCCACTTCATGATGA
GGTCTGGCGTGATGACACCGGCGAGAGCGTGGTATATGGTCGGCCGCTGG
TGTTGCGTGCATTGGCGGCTATGGCGGAATCAAGTGTGTCGAATGTGGCA
AGGACGAGAGCCGTCATTGTGAAGATTTGGCAAGCGAGGGATAGCGATAT
GCTTAAGGGCTCGCCGGTGGATGCAGCGGATGATGGCGTTGCGGGGTGTA
ATGATTGGGAGTGGTATGTTGCGCCGATTAGTACAGCGATGAGTTTGGCT
TGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2628265..2630067 - |
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