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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2944410..2946505+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002570-T1 ID=KJC3_002570-T1|Name=KJC3_002570-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2096bp|location=Sequence derived from alignment at ch2:2944410..2946505+ (Aspergillus niger KJC3)
CGGAAGTATCATGTGCAGAACGGCGACGGAATCCCTATGCATTAATGGCA
TGTGAGTCGTGTCGTGCTGCAAAGGTCAAGTGTAGTGCTCACATCCCATG
CACCCGGTGCCAACGACTTAATAAACCATGCGTCTATCGCGAAACTTTGA
GACGACGGCCAGGAGCAGTTCCTTTACCAGTCTCAGCAAGGAATGATCTG
GCGCCTGAGTACAATGAGGATGGCTCCTTTCTTGACGGAGACTTTCACCC
TTGCCGACTGACGTCGCCGACCCGGAGCGGTACTTATATGGCAGCTGTCA
ACAGCACCACCGATAGTACGATCAACCATTTCATCCGGAGTCTCTTCCCG
GACTCAGAGCCATTCATGGCCTCCTCTGGTATCCTGGCCTTCTCCTATCT
CTCACCCACGGATCAGCTTCCCATCACCGGAGCAAGTAATCCCGATTTAC
GTTTTTTGCCAAGAGACCTGGCCGTCAGGTGCTTCGACCTTTATATCGCT
TCTTTGTGGCATTTAAATCCGTTTCAGCCCATTAACCTCCTTCAAGCCTC
TTTGTGCGATGTTCTTGGGGTTTGGGGGTCTAACCATTCCTCATCCGCCA
TTGACCAGGCGAATGCCTTGGCGATTCTCGCTCTTGGCGCATCATGTACA
GAATATTATAATTTCGCAGATTACCTACATCAAAAGTCAAAACAGTACGC
AGACGAGACCGTTGTTGGTGTCGATATGGCTGTGGTACAGCATACATTGC
TTCAGATAGGTACCGCACCATCCTGCGCCTTGACCACCAACTGACGATTT
ATCACGCCCAGTATCAGTCGCATATCAACCAGCATGCACAGGCGTATGCG
ATTTTGGACGATGCCAGATGCAAATTGTCCCTTATAGAGCTCGACACCCA
CACAGACTTGGCAAGCACCGAACCTGCTCGCGGCATACAGAAATCGTCGA
TCATCGTCACCTTAATCGCGTTCGAGCGATACATGGCTCTATGTCTGGGA
CTCCCGTCCCATTTTCCGGATGACCTATGTCCCCCGGATGATCAACTTCC
CCCCGCCCTATACGCAATTAACAAATTCTCCCTCGTCGCCTCTCAGATTA
CACAAATCCAACAGAAGCTCCAGGGGGATCTAGGCGCGTTGACACAGGCC
TCCTACGAGCTTCATCAGCGACTCAACCTTTTCCTTCTAGAGGCTTCTAA
CAAATGCCGCTCGCTATATATTGGAGAGCGACAGCGTGCCGATCTGAATA
TCTTAATCAGCGTCCGTAAGTCTCTCTTCCCTCTTCACGGTCATGAAAAA
TCTTACCAACCCAGCGCCCCCGCAAAACAGTCTTCCACTATGGGATTCAG
ATTCTCTTCCGCCCATTCCTCATCATCAAACTCAATCACACGCTCCAAAG
CAATGCGCCATCGCCATCATCCAGATTCACTCCCTCCTCCTATTGCTGTT
CCGAGCTCATAGACCTAGCGGGTCCCTACGCTGTTCGTGCCGCCAAGTCA
ATAATCTACCTAATCGGACAAGCCTTCCACTCTGGTTCCCTGATTAAGGT
CAGTCACTCAGCCTGCTACGACGATTTGGTTATTTTCTACCTACCTTGCC
CCCTTCTTCCAGTTTACAAGTTGAAGTCACAATGAACAAAGTAAAATGGA
AACAAAAAAGAAAGAAACAATCAGCTCTAACCCGATCCCATTGGGAACAA
ACAACAACAGGACCTCCCGCCCAATGGATCTTTCATTGAGAGTGCATGCC
TCTCACTCCTTCTAGCCGGCCTGTGCGATGGCAGTGACCAGCTCGAGCAG
TATCTTGTTGACATCCGAAACGGGATAGGTTACCTGATGCAGATGTCCTG
CCAGTTCACCGTGGCCGAGCGGATTCAGAATTTAAGAGACCTAAGTGCTC
GCGTCGCGTTGGGCGATTATGAGGCGGTAGTAAGACATGTATCCTTTGAG
ACATAGCCTTCGCTGCATGATTCATGGGTTCTGTGTGTCTTCGAAACTTT
TGCTATAGGTAAAGAATCCTGGGGGGTGGGATTCGTTGAAATTTTTTTCT
ATTTCGTCATCATTGTGTGGACCTTTTGCTGGATAAGGAGGCTGGC back to topCoding sequence (CDS) from alignment at ch2:2944410..2946505+ >KJC3_002570-T1 ID=KJC3_002570-T1|Name=KJC3_002570-T1|organism=Aspergillus niger KJC3|type=CDS|length=6540bp|location=Sequence derived from alignment at ch2:2944410..2946505+ (Aspergillus niger KJC3)
ATGGCATGTGAGTCGTGTCGTGCTGCAAAGGTCAAGTGTAGTGCTCACAT
CCCATGCACCCGGTGCCAACGACTTAATAAACCATGCGTCTATCGCGAAA
CTTTGAGACGACGGCCAGGAGCAGTTCCTTTACCAGTCTCAGCAAGGAAT
GATCTGGCGCCTGAGTACAATGAGGATGGCTCCTTTCTTGACGGAGACTT
TCACCCTTGCCGACTGACGTCGCCGACCCGGAGCGGTACTTATATGGCAG
CTGTCAACAGCACCACCGATAGTACGATCAACCATTTCATCCGGAGTCTC
TTCCCGGACTCAGAGCCATTCATGGCCTCCTCTGGTATCCTGGCCTTCTC
CTATCTCTCACCCACGGATCAGCTTCCCATCACCGGAGCAAGTAATCCCG
ATTTACGTTTTTTGCCAAGAGACCTGGCCGTCAGGTGCTTCGACCTTTAT
ATCGCTTCTTTGTGGCATTTAAATCCGTTTCAGCCCATTAACCTCCTTCA
AGCCTCTTTGTGCGATGTTCTTGGGGTTTGGGGGTCTAACCATTCCTCAT
CCGCCATTGACCAGGCGAATGCCTTGGCGATTCTCGCTCTTGGCGCATCA
TGTACAGAATATTATAATTTCGCAGATTACCTACATCAAAAGTCAAAACA
GTACGCAGACGAGACCGTTGTTGGTGTCGATATGGCTGTGGTACAGCATA
CATTGCTTCAGGCCCAGTATCAGTCGCATATCAACCAGCATGCACAGGCG
TATGCGATTTTGGACGATGCCAGATGCAAATTGTCCCTTATAGAGCTCGA
CACCCACACAGACTTGGCAAGCACCGAACCTGCTCGCGGCATACAGAAAT
CGTCGATCATCGTCACCTTAATCGCGTTCGAGCGATACATGGCTCTATGT
CTGGGACTCCCGTCCCATTTTCCGGATGACCTATGTCCCCCGGATGATCA
ACTTCCCCCCGCCCTATACGCAATTAACAAATTCTCCCTCGTCGCCTCTC
AGATTACACAAATCCAACAGAAGCTCCAGGGGGATCTAGGCGCGTTGACA
CAGGCCTCCTACGAGCTTCATCAGCGACTCAACCTTTTCCTTCTAGAGGC
TTCTAACAAATGCCGCTCGCTATATATTGGAGAGCGACAGCGTGCCGATC
TGAATATCTTAATCAGCGTCCTCTTCCACTATGGGATTCAGATTCTCTTC
CGCCCATTCCTCATCATCAAACTCAATCACACGCTCCAAAGCAATGCGCC
ATCGCCATCATCCAGATTCACTCCCTCCTCCTATTGCTGTTCCGAGCTCA
TAGACCTAGCGGGTCCCTACGCTGTTCGTGCCGCCAAGTCAATAATCTAC
CTAATCGGACAAGCCTTCCACTCTGGTTCCCTGATTAAGGACCTCCCGCC
CAATGGATCTTTCATTGAGAGTGCATGCCTCTCACTCCTTCTAGCCGGCC
TGTGCGATGGCAGTGACCAGCTCGAGCAGTATCTTGTTGACATCCGAAAC
GGGATAGGTTACCTGATGCAGATGTCCTGCCAGTTCACCGTGGCCGAGCG
GATTCAGAATTTAAGAGACCTAAGTGCTCGCGTCGCGTTGGGCGATTATG
AGGCGGTAGTAAGACATGTATCCTTTGAGACATAGATGGCATGTGAGTCG
TGTCGTGCTGCAAAGGTCAAGTGTAGTGCTCACATCCCATGCACCCGGTG
CCAACGACTTAATAAACCATGCGTCTATCGCGAAACTTTGAGACGACGGC
CAGGAGCAGTTCCTTTACCAGTCTCAGCAAGGAATGATCTGGCGCCTGAG
TACAATGAGGATGGCTCCTTTCTTGACGGAGACTTTCACCCTTGCCGACT
GACGTCGCCGACCCGGAGCGGTACTTATATGGCAGCTGTCAACAGCACCA
CCGATAGTACGATCAACCATTTCATCCGGAGTCTCTTCCCGGACTCAGAG
CCATTCATGGCCTCCTCTGGTATCCTGGCCTTCTCCTATCTCTCACCCAC
GGATCAGCTTCCCATCACCGGAGCAAGTAATCCCGATTTACGTTTTTTGC
CAAGAGACCTGGCCGTCAGGTGCTTCGACCTTTATATCGCTTCTTTGTGG
CATTTAAATCCGTTTCAGCCCATTAACCTCCTTCAAGCCTCTTTGTGCGA
TGTTCTTGGGGTTTGGGGGTCTAACCATTCCTCATCCGCCATTGACCAGG
CGAATGCCTTGGCGATTCTCGCTCTTGGCGCATCATGTACAGAATATTAT
AATTTCGCAGATTACCTACATCAAAAGTCAAAACAGTACGCAGACGAGAC
CGTTGTTGGTGTCGATATGGCTGTGGTACAGCATACATTGCTTCAGGCCC
AGTATCAGTCGCATATCAACCAGCATGCACAGGCGTATGCGATTTTGGAC
GATGCCAGATGCAAATTGTCCCTTATAGAGCTCGACACCCACACAGACTT
GGCAAGCACCGAACCTGCTCGCGGCATACAGAAATCGTCGATCATCGTCA
CCTTAATCGCGTTCGAGCGATACATGGCTCTATGTCTGGGACTCCCGTCC
CATTTTCCGGATGACCTATGTCCCCCGGATGATCAACTTCCCCCCGCCCT
ATACGCAATTAACAAATTCTCCCTCGTCGCCTCTCAGATTACACAAATCC
AACAGAAGCTCCAGGGGGATCTAGGCGCGTTGACACAGGCCTCCTACGAG
CTTCATCAGCGACTCAACCTTTTCCTTCTAGAGGCTTCTAACAAATGCCG
CTCGCTATATATTGGAGAGCGACAGCGTGCCGATCTGAATATCTTAATCA
GCGTCCTCTTCCACTATGGGATTCAGATTCTCTTCCGCCCATTCCTCATC
ATCAAACTCAATCACACGCTCCAAAGCAATGCGCCATCGCCATCATCCAG
ATTCACTCCCTCCTCCTATTGCTGTTCCGAGCTCATAGACCTAGCGGGTC
CCTACGCTGTTCGTGCCGCCAAGTCAATAATCTACCTAATCGGACAAGCC
TTCCACTCTGGTTCCCTGATTAAGGACCTCCCGCCCAATGGATCTTTCAT
TGAGAGTGCATGCCTCTCACTCCTTCTAGCCGGCCTGTGCGATGGCAGTG
ACCAGCTCGAGCAGTATCTTGTTGACATCCGAAACGGGATAGGTTACCTG
ATGCAGATGTCCTGCCAGTTCACCGTGGCCGAGCGGATTCAGAATTTAAG
AGACCTAAGTGCTCGCGTCGCGTTGGGCGATTATGAGGCGGTAGTAAGAC
ATGTATCCTTTGAGACATAGATGGCATGTGAGTCGTGTCGTGCTGCAAAG
GTCAAGTGTAGTGCTCACATCCCATGCACCCGGTGCCAACGACTTAATAA
ACCATGCGTCTATCGCGAAACTTTGAGACGACGGCCAGGAGCAGTTCCTT
TACCAGTCTCAGCAAGGAATGATCTGGCGCCTGAGTACAATGAGGATGGC
TCCTTTCTTGACGGAGACTTTCACCCTTGCCGACTGACGTCGCCGACCCG
GAGCGGTACTTATATGGCAGCTGTCAACAGCACCACCGATAGTACGATCA
ACCATTTCATCCGGAGTCTCTTCCCGGACTCAGAGCCATTCATGGCCTCC
TCTGGTATCCTGGCCTTCTCCTATCTCTCACCCACGGATCAGCTTCCCAT
CACCGGAGCAAGTAATCCCGATTTACGTTTTTTGCCAAGAGACCTGGCCG
TCAGGTGCTTCGACCTTTATATCGCTTCTTTGTGGCATTTAAATCCGTTT
CAGCCCATTAACCTCCTTCAAGCCTCTTTGTGCGATGTTCTTGGGGTTTG
GGGGTCTAACCATTCCTCATCCGCCATTGACCAGGCGAATGCCTTGGCGA
TTCTCGCTCTTGGCGCATCATGTACAGAATATTATAATTTCGCAGATTAC
CTACATCAAAAGTCAAAACAGTACGCAGACGAGACCGTTGTTGGTGTCGA
TATGGCTGTGGTACAGCATACATTGCTTCAGGCCCAGTATCAGTCGCATA
TCAACCAGCATGCACAGGCGTATGCGATTTTGGACGATGCCAGATGCAAA
TTGTCCCTTATAGAGCTCGACACCCACACAGACTTGGCAAGCACCGAACC
TGCTCGCGGCATACAGAAATCGTCGATCATCGTCACCTTAATCGCGTTCG
AGCGATACATGGCTCTATGTCTGGGACTCCCGTCCCATTTTCCGGATGAC
CTATGTCCCCCGGATGATCAACTTCCCCCCGCCCTATACGCAATTAACAA
ATTCTCCCTCGTCGCCTCTCAGATTACACAAATCCAACAGAAGCTCCAGG
GGGATCTAGGCGCGTTGACACAGGCCTCCTACGAGCTTCATCAGCGACTC
AACCTTTTCCTTCTAGAGGCTTCTAACAAATGCCGCTCGCTATATATTGG
AGAGCGACAGCGTGCCGATCTGAATATCTTAATCAGCGTCCTCTTCCACT
ATGGGATTCAGATTCTCTTCCGCCCATTCCTCATCATCAAACTCAATCAC
ACGCTCCAAAGCAATGCGCCATCGCCATCATCCAGATTCACTCCCTCCTC
CTATTGCTGTTCCGAGCTCATAGACCTAGCGGGTCCCTACGCTGTTCGTG
CCGCCAAGTCAATAATCTACCTAATCGGACAAGCCTTCCACTCTGGTTCC
CTGATTAAGGACCTCCCGCCCAATGGATCTTTCATTGAGAGTGCATGCCT
CTCACTCCTTCTAGCCGGCCTGTGCGATGGCAGTGACCAGCTCGAGCAGT
ATCTTGTTGACATCCGAAACGGGATAGGTTACCTGATGCAGATGTCCTGC
CAGTTCACCGTGGCCGAGCGGATTCAGAATTTAAGAGACCTAAGTGCTCG
CGTCGCGTTGGGCGATTATGAGGCGGTAGTAAGACATGTATCCTTTGAGA
CATAGATGGCATGTGAGTCGTGTCGTGCTGCAAAGGTCAAGTGTAGTGCT
CACATCCCATGCACCCGGTGCCAACGACTTAATAAACCATGCGTCTATCG
CGAAACTTTGAGACGACGGCCAGGAGCAGTTCCTTTACCAGTCTCAGCAA
GGAATGATCTGGCGCCTGAGTACAATGAGGATGGCTCCTTTCTTGACGGA
GACTTTCACCCTTGCCGACTGACGTCGCCGACCCGGAGCGGTACTTATAT
GGCAGCTGTCAACAGCACCACCGATAGTACGATCAACCATTTCATCCGGA
GTCTCTTCCCGGACTCAGAGCCATTCATGGCCTCCTCTGGTATCCTGGCC
TTCTCCTATCTCTCACCCACGGATCAGCTTCCCATCACCGGAGCAAGTAA
TCCCGATTTACGTTTTTTGCCAAGAGACCTGGCCGTCAGGTGCTTCGACC
TTTATATCGCTTCTTTGTGGCATTTAAATCCGTTTCAGCCCATTAACCTC
CTTCAAGCCTCTTTGTGCGATGTTCTTGGGGTTTGGGGGTCTAACCATTC
CTCATCCGCCATTGACCAGGCGAATGCCTTGGCGATTCTCGCTCTTGGCG
CATCATGTACAGAATATTATAATTTCGCAGATTACCTACATCAAAAGTCA
AAACAGTACGCAGACGAGACCGTTGTTGGTGTCGATATGGCTGTGGTACA
GCATACATTGCTTCAGGCCCAGTATCAGTCGCATATCAACCAGCATGCAC
AGGCGTATGCGATTTTGGACGATGCCAGATGCAAATTGTCCCTTATAGAG
CTCGACACCCACACAGACTTGGCAAGCACCGAACCTGCTCGCGGCATACA
GAAATCGTCGATCATCGTCACCTTAATCGCGTTCGAGCGATACATGGCTC
TATGTCTGGGACTCCCGTCCCATTTTCCGGATGACCTATGTCCCCCGGAT
GATCAACTTCCCCCCGCCCTATACGCAATTAACAAATTCTCCCTCGTCGC
CTCTCAGATTACACAAATCCAACAGAAGCTCCAGGGGGATCTAGGCGCGT
TGACACAGGCCTCCTACGAGCTTCATCAGCGACTCAACCTTTTCCTTCTA
GAGGCTTCTAACAAATGCCGCTCGCTATATATTGGAGAGCGACAGCGTGC
CGATCTGAATATCTTAATCAGCGTCCTCTTCCACTATGGGATTCAGATTC
TCTTCCGCCCATTCCTCATCATCAAACTCAATCACACGCTCCAAAGCAAT
GCGCCATCGCCATCATCCAGATTCACTCCCTCCTCCTATTGCTGTTCCGA
GCTCATAGACCTAGCGGGTCCCTACGCTGTTCGTGCCGCCAAGTCAATAA
TCTACCTAATCGGACAAGCCTTCCACTCTGGTTCCCTGATTAAGGACCTC
CCGCCCAATGGATCTTTCATTGAGAGTGCATGCCTCTCACTCCTTCTAGC
CGGCCTGTGCGATGGCAGTGACCAGCTCGAGCAGTATCTTGTTGACATCC
GAAACGGGATAGGTTACCTGATGCAGATGTCCTGCCAGTTCACCGTGGCC
GAGCGGATTCAGAATTTAAGAGACCTAAGTGCTCGCGTCGCGTTGGGCGA
TTATGAGGCGGTAGTAAGACATGTATCCTTTGAGACATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002570-T1.utr5p1 | KJC3_002570-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002570-T1.utr3p1 | KJC3_002570-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2944410..2946505 + |
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