|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2949589..2951745+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002572-T1 ID=KJC3_002572-T1|Name=KJC3_002572-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2157bp|location=Sequence derived from alignment at ch2:2949589..2951745+ (Aspergillus niger KJC3)
CGATCCTTCAGATTCTACCCGATTACTCGTCTCCAATGCCACCACGAGAC
GCGTAGAACAACACAGGAAGCCAACAGTCTATCTGACCAGATATGGACTT
CCAACGATTACGTTTCAAACAAGTGATGGTCAGCGGGTCTTCAGTTGCGA
CCACGCAGCAGGAGTACAAGACTTTACCGAACCGAGCGCGAAACAAAAGC
AAACTGGGCTGTCGAGAATGCAAGACAAAGCGGGTTAAATGCGATGAGGC
CTATCCAACGTGCAAGCGGTGCCAGCGTCAAGGCCTTGTCTGTTCGTCGG
CACCGCGGCCAACACAGTGGCAAGTTGAGGCACCGTGGCTCTCATTGCAG
CCTAAAACACATGTCAATCGACGTCTACTACAGTATTACCTGGAGAAAGT
CAGCCAAGCGTTCGTTATAGATCCTGAGAACAATCCGTTCTCTTTTCCTA
TATTGAAAGATATTGCCCAATCTCCGGCACTTCTCCATGCTATCCAGTCA
ATCAGTGCCAGCCATGAACAGTACTTCCCGGTCCAAGCCCCCATTCTGGC
CCTTGAGGAACGTGGCAAAGCCATAGCTTGCCTTCGAAGAGAGATAGATC
AAGTCCAACGTGCTAATTACACGCACTTTCTGACCATAATGCTGTTGTCT
CTTATGCAAGTTGCTGGTCCTGACCCGAAGGACTATGGCAAACAGCACTT
ATTCGGTGCCTGTGCCTTGATCAACAGTATGCTCCAAGACACATCTGTGT
CGACGACTAACGACCCTGTGGTTCGACTCTGCCTGGGAGTCTATCTTTAC
TGGGACATGTGCAGTTCGTTCTTAGTAAAGCCCGGTGAACTACAGGGTGT
CAACTCATTTAACATATCTCTCGCGGTGCGCAGGATGGGTGACTGGCACC
ACCCAATGTATGGAACATGTAGCCGTCTACTACTTACCATAGCGAATGTC
GGACGATATTGCCGGCAGGTACATGATATGCCGCAGAGACGCAACTTCGC
CCAAGAAGATATGCTGGAGGCGGAGCTTAGTAACTGGACGACGAGCTCCA
ATAACCCCGACCTGATCCACTTATATGAAGCGTTCCGCAACCACGGTCTT
GTTCTCCTTTATCAATCTCGTGCACATGCACAGAGGAGTCTTTCTACTGA
TACGAATTCGACCAAAGCACAAGAGTCATTGATCCTACGGTACGCCGAAG
AAACAGTCCGTCATCTGATGCTAATCCCTTCGTCCTCGTACTATCTCAAT
TTTCAATCCCTTGCTCTTCTATCAGCCGGGTCCGAATTGACCGAGTCGCA
TCACCTCCTGCGCGATAAAGTGCGTGACAGACTGCGGGCCATCTACTCTT
TGAATCGCATACCCGCAAATTTAATGGCTCTTCAACTTGTTGAAGAACTT
TGGGATGCCCGAGACAGTGGTAATTCCACTTCCTTCTGGCTATCGCACAT
GCTGCAGAAGGATTGGCTGTTGCTTCTAGTATAAGGCTCTAGATGCCCCA
CACTCCGATTTTGAATTACAAGAACAGTTCCATGCTTCCCGGAAACAACT
TGAAAATTTTCCGACATCCCGAGACCCGTTAAAAACCATGGGCAAAGATA
GCGACAGCCGCCAGCCACATGACTTTACCGCGCCAATTAGCACTCAACAT
CCAACCCGAATAAACGACGATGAGAATAAGTGGCGGCTTTCGAACATAAC
AACCCACAGACATTGGCAACGCCAAGCTCTCATCAACACTATTGAGCGCT
GACACCACCATGCCCCTTAGGCATAAGGCGTCAGCATAACCGACACGGTT
TGACCCGGTTCAGAAACGCACTCGGTCGGCCGAAATCGCACATAGCAACG
CAGCGTGGCTGAGAGAACTAGTAATATAAATCAAGCTAACAAGCCCCGAT
TTTATGTGTGGAACTGTGGCGTTCCAATTTCGGGGTCATCAAGGGAACAT
CAACGCTGCAGCCAGCGGTCGGTGTGGAGGATCGGCTGCTACGGCAAGGA
CAGGAAACTTCATGGACTTAATTCTGAGGCCAATACGGCAGGGTTGTACC
TCACCGATAAGGAGCTGGTCGGAAAACCAAATGTGGTTTGCATGAGAGTC
ATATTCTTGACGTATGGACCTTCAGTCTGCCGTACTAATTATGTATTTAA
GCAAGGT back to topCoding sequence (CDS) from alignment at ch2:2949589..2951745+ >KJC3_002572-T1 ID=KJC3_002572-T1|Name=KJC3_002572-T1|organism=Aspergillus niger KJC3|type=CDS|length=1392bp|location=Sequence derived from alignment at ch2:2949589..2951745+ (Aspergillus niger KJC3)
ATGGACTTCCAACGATTACGTTTCAAACAAGTGATGGTCAGCGGGTCTTC
AGTTGCGACCACGCAGCAGGAGTACAAGACTTTACCGAACCGAGCGCGAA
ACAAAAGCAAACTGGGCTGTCGAGAATGCAAGACAAAGCGGGTTAAATGC
GATGAGGCCTATCCAACGTGCAAGCGGTGCCAGCGTCAAGGCCTTGTCTG
TTCGTCGGCACCGCGGCCAACACAGTGGCAAGTTGAGGCACCGTGGCTCT
CATTGCAGCCTAAAACACATGTCAATCGACGTCTACTACAGTATTACCTG
GAGAAAGTCAGCCAAGCGTTCGTTATAGATCCTGAGAACAATCCGTTCTC
TTTTCCTATATTGAAAGATATTGCCCAATCTCCGGCACTTCTCCATGCTA
TCCAGTCAATCAGTGCCAGCCATGAACAGTACTTCCCGGTCCAAGCCCCC
ATTCTGGCCCTTGAGGAACGTGGCAAAGCCATAGCTTGCCTTCGAAGAGA
GATAGATCAAGTCCAACGTGCTAATTACACGCACTTTCTGACCATAATGC
TGTTGTCTCTTATGCAAGTTGCTGGTCCTGACCCGAAGGACTATGGCAAA
CAGCACTTATTCGGTGCCTGTGCCTTGATCAACAGTATGCTCCAAGACAC
ATCTGTGTCGACGACTAACGACCCTGTGGTTCGACTCTGCCTGGGAGTCT
ATCTTTACTGGGACATGTGCAGTTCGTTCTTAGTAAAGCCCGGTGAACTA
CAGGGTGTCAACTCATTTAACATATCTCTCGCGGTGCGCAGGATGGGTGA
CTGGCACCACCCAATGTATGGAACATGTAGCCGTCTACTACTTACCATAG
CGAATGTCGGACGATATTGCCGGCAGGTACATGATATGCCGCAGAGACGC
AACTTCGCCCAAGAAGATATGCTGGAGGCGGAGCTTAGTAACTGGACGAC
GAGCTCCAATAACCCCGACCTGATCCACTTATATGAAGCGTTCCGCAACC
ACGGTCTTGTTCTCCTTTATCAATCTCGTGCACATGCACAGAGGAGTCTT
TCTACTGATACGAATTCGACCAAAGCACAAGAGTCATTGATCCTACGGTA
CGCCGAAGAAACAGTCCGTCATCTGATGCTAATCCCTTCGTCCTCGTACT
ATCTCAATTTTCAATCCCTTGCTCTTCTATCAGCCGGGTCCGAATTGACC
GAGTCGCATCACCTCCTGCGCGATAAAGTGCGTGACAGACTGCGGGCCAT
CTACTCTTTGAATCGCATACCCGCAAATTTAATGGCTCTTCAACTTGTTG
AAGAACTTTGGGATGCCCGAGACAGTGGTAATTCCACTTCCTTCTGGCTA
TCGCACATGCTGCAGAAGGATTGGCTGTTGCTTCTAGTATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002572-T1.utr5p1 | KJC3_002572-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002572-T1.utr3p1 | KJC3_002572-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2949589..2951745 + |
|
