|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3280358..3283646- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002684-T1 ID=KJC3_002684-T1|Name=KJC3_002684-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3289bp|location=Sequence derived from alignment at ch2:3280358..3283646- (Aspergillus niger KJC3)
CCCCTCTGACCCTCTCGCCGAAACCCAAAGCGACCGGACTGAACTGCGAC
TACTTCTTCCCGCTCCCCTCCCGCCTTTCTCCCCCCCTTCTCTTCCTCTT
TTTTTCCCTTTTTCTCTTTTCCACAGGGTTACTTCTGCAACTCTGCCTCG
AGATCGATCGCTTTTTCTCTTTTATCTTGGCCGCCACAGCCGGTATTTGG
TGTCCTGTCTCACGGCCGGCGCCAAACGGTGCGTAGGCTTTGGCCCCCCC
ATTCCCTTCAAATCCTCTTCTCCTGATTCCTTTGGGTTTTTGTGTATGTG
CCTGTTGGGCTTTTCTCGTTCCGGTTCGAACTGCCCATCCCGCCCCTGGT
ACCTGGGTGTTGCCATTGTGTGAACAACTCGCCTACCCGCTTCTTTGTTC
TCTCGCCTTTCTATACTACTATACTCCCTTCCCCGGGCTTCTTCTATCGG
GGCTGCCAAATCATACCCGGCAGCCTAATCGACCTTCCCGATCTAAGTTG
CGATTCGACCCTCTTACAGGTGAAACGGCGTTTCTGTGACCTCGTTCGGT
GCATTGGGATATTCAAGCTGGTGATACCCTTGCTTTGTTGGAGTTTGCCT
TGGTTTCTGCTGGTCCGATCTTTGCGACGGACCACACCACCTATACCCCG
AATTTCTCGCCTTGACGGCCTCTTCGTTTTCCTCCGGCAGGTTTTCCTGT
TCGGCTACTATCCCCATACAAAACAACCTTATATAAAAGACCAAAACTAG
GCGGAGAAGCGTGCGACTTCTCGGCCCCCACTCTGTTCACTTATACCCTT
TTGATCTATATACCGTCGCGAATCGTCGCATGTTCCTTTCTCAGTAACCG
CGGCGATGCTTATCGATGGCGAGAAGTGGGCTTGTGAAGCTTGCGTCCGG
GGTCACCGTGTCAGCAGCTGTCACCACAGTGGTAAGTGTGGCAACCATCT
CTGACGCATCACATCTTTTTCCCGTCGCAATTGCTAACGTGGCTTGGCTG
CAGACCGCCCCTTGACCCACATTAACAAAAAAGGCCGTCCTGTCTCCCAA
TGCGCTCACTGTCGCGGCCTACGCAAGTCACGGACAACCCACACTAAGTG
CGAGTGTGGTGACAAGAAAAAGAATTGCCACAAGAATGACTCAGATCCCC
ATGCTACGGATAAGCGGGATCACAAGCGTGAGCATGATGGTGATGGTGAA
CTGGTTCATAGTTTTCTGATCTGGATTTTACAGAGGACTCCCGTCCAAAA
TGTGGCTGCACTCATGGTCAGCGCTGTACCTGTGCGCTGAAGAAGGAACC
CCACCTGGATACCGTTCCGGAGACCGGCCTCCCTCCACCCCCAGCTGCGA
CGCTGTTGGATCAGCCCAAGAAGCCGCAGCTGACCTCGACCAAATCGGAG
AGTACCTTGACCATCTTCCGCGATGGCCACCACAAGCCGGCTCATAAGCA
CAACGACATGGCTCACAAATGCGGTCTGCCCTATACGATACCCCGTTCTC
ATACCATCCATGCTGGCGATGTGGCCCGCCGCTCGGTCGACCACCTGCCT
TTGGTCCAGCCCACCATGCTCAACGAGGGTTTCGCGAATCAACAACAGCC
CGCAGAACAGTCACCTTCGCGCGGACAACATCGCCGTGTCAAGTCTGAAC
ATGGTTCTCCTGAGAGTGCCCCCGTCGTCTCGCCGGACAACGTCCCGACA
ACCGTTCCCCCACTCGACATCTCGTCCTTTTTCCCTCAAGTTCAGACAGC
GGAGAACGCTGGTGACGTTGGCGTTCCCGAGCCGGTCTCGATGCCTATGA
AGACCCCTCTGGACCCACTGGTCACGTCGGGGTTACCCTTCGACATGTCA
TCATTCTCATCCTTCCCAACAACAGCGACATCGCCTGTCAATTGTGTCGC
ATTTCAGGACCCCTACAAGGAGCCTTTCTTCACGTCACCGGAGGGCGACG
TGTCTCTTCAGTCGACCGCATTCAGCGCCCCTCCAGTCGATTGGTCAAGC
TTCCCTCTGTACTCCTCGGAAGTACCAGCCGCGACAAGCACTCAAGCACC
TTCCTACGCAAGCTTCGATTACAACTCTATGGCACCCGGGTTCCCAGCCC
CATCATCATCCGGTGACATCTCTGAAGCGGATGAGTTCGCGCCGATCCCT
GGCTTGGGACGTACTGGCAGCGATCTGCACGATCTCAACAGCGTTAGCGA
GGGCTCCGATATCGACCATTTCCGCATCAGCTCCGCGTCGTCCTTCATTG
GCCTTCCCCAGGCACAGCTCTTGGCATCGAATAACCTTGAGTCGATTGAC
ATTGACGACTTCCTCAAGTCGGCCAACGAGTCCACCGCGGCGTTAGAGCA
TCAGCTCCAGGCCACGATGGGCATGGAAGCCAAGCAACTTCCGACCGAGG
ACGCCTTCGCCATGTCGAATGCTGAGACTTTCAAGCCGGTGACTACACCG
ACTGCCAGCATGTCGATGACCACGCCTCCGACCGAAGCCGCTTGGAACGT
GGGGCTCTTCGACCCCAATACTGCCCCCATGAGCGAAAACAGCAATGGCA
ATTTCTACGTGCCGCCATGGGTGCAGTAAGGCTGGCTTTCGGATGAGACG
CGGCTTGCTACATAGTGTTGTGGTCTGTTCGCGGCACCTTACCACCACCT
CCACACCGTCTGAGTGACGACCCCCACGTCTTCATGACCTTGATGAGAGA
TGATGATAAATGCCTGATTTATCTGTGTTCTATTTAGCAGTCCGAGAGTG
ACACTAAACTATAGCATCCAATTTTATAAAGATTACTATTGTTTCATTCA
TTCGGCTTTTTTTTTTTTTTTTTTTTTTTTGCTGCCCCCACTGGGTCTTG
TCCAACCCTGTATACATTTACATATTCCTTACCGCTTCCTAGTTCTTTTC
TCTGGCTGATTGTGTCGAGTCACTCGCTCTGCCATTTTCACCTCGCGCGT
ATATAGAGCTGATTTCTGCAGCGTTCTTCACACGATAGACAGCGGGTCCC
TATGTCTCAATGAAGAAAGACTATTCTTAGGTGTGGAGTGTGTTCGTTCC
TTCAATGCCCTGATCCGCAGTGGACCGATCGTTCTTCATCAGGGACAACG
CAGACGCCTGTTAGTTAGACAGGTAGTAATCCTTCTCGGGGATTACGTCA
ACTCCGCTGCAGCGAACAACAGAGCGCTAAGCATTTGTACGGCAGAAGCA
GACACCGAAACACTCTTTTCGGTATACTCTGTAAGTTACAATGAACTGGT
TATTGAAAGAAGGCAAATTAGATAGATTGTCAATGTATG back to topCoding sequence (CDS) from alignment at ch2:3280358..3283646- >KJC3_002684-T1 ID=KJC3_002684-T1|Name=KJC3_002684-T1|organism=Aspergillus niger KJC3|type=CDS|length=4788bp|location=Sequence derived from alignment at ch2:3280358..3283646- (Aspergillus niger KJC3)
AGGACTCCCGTCCAAAATGTGGCTGCACTCATGGTCAGCGCTGTACCTGT
GCGCTGAAGAAGGAACCCCACCTGGATACCGTTCCGGAGACCGGCCTCCC
TCCACCCCCAGCTGCGACGCTGTTGGATCAGCCCAAGAAGCCGCAGCTGA
CCTCGACCAAATCGGAGAGTACCTTGACCATCTTCCGCGATGGCCACCAC
AAGCCGGCTCATAAGCACAACGACATGGCTCACAAATGCGGTCTGCCCTA
TACGATACCCCGTTCTCATACCATCCATGCTGGCGATGTGGCCCGCCGCT
CGGTCGACCACCTGCCTTTGGTCCAGCCCACCATGCTCAACGAGGGTTTC
GCGAATCAACAACAGCCCGCAGAACAGTCACCTTCGCGCGGACAACATCG
CCGTGTCAAGTCTGAACATGGTTCTCCTGAGAGTGCCCCCGTCGTCTCGC
CGGACAACGTCCCGACAACCGTTCCCCCACTCGACATCTCGTCCTTTTTC
CCTCAAGTTCAGACAGCGGAGAACGCTGGTGACGTTGGCGTTCCCGAGCC
GGTCTCGATGCCTATGAAGACCCCTCTGGACCCACTGGTCACGTCGGGGT
TACCCTTCGACATGTCATCATTCTCATCCTTCCCAACAACAGCGACATCG
CCTGTCAATTGTGTCGCATTTCAGGACCCCTACAAGGAGCCTTTCTTCAC
GTCACCGGAGGGCGACGTGTCTCTTCAGTCGACCGCATTCAGCGCCCCTC
CAGTCGATTGGTCAAGCTTCCCTCTGTACTCCTCGGAAGTACCAGCCGCG
ACAAGCACTCAAGCACCTTCCTACGCAAGCTTCGATTACAACTCTATGGC
ACCCGGGTTCCCAGCCCCATCATCATCCGGTGACATCTCTGAAGCGGATG
AGTTCGCGCCGATCCCTGGCTTGGGACGTACTGGCAGCGATCTGCACGAT
CTCAACAGCGTTAGCGAGGGCTCCGATATCGACCATTTCCGCATCAGCTC
CGCGTCGTCCTTCATTGGCCTTCCCCAGGCACAGCTCTTGGCATCGAATA
ACCTTGAGTCGATTGACATTGACGACTTCCTCAAGTCGGCCAACGAGTCC
ACCGCGGCGTTAGAGCATCAGCTCCAGGCCACGATGGGCATGGAAGCCAA
GCAACTTCCGACCGAGGACGCCTTCGCCATGTCGAATGCTGAGACTTTCA
AGCCGGTGACTACACCGACTGCCAGCATGTCGATGACCACGCCTCCGACC
GAAGCCGCTTGGAACGTGGGGCTCTTCGACCCCAATACTGCCCCCATGAG
CGAAAACAGCAATGGCAATTTCTACGTGCCGCCATGGGTGCAGTAAACCG
CCCCTTGACCCACATTAACAAAAAAGGCCGTCCTGTCTCCCAATGCGCTC
ACTGTCGCGGCCTACGCAAGTCACGGACAACCCACACTAAGTGCGAGTGT
GGTGACAAGAAAAAGAATTGCCACAAGAATGACTCAGATCCCCATGCTAC
GGATAAGCGGGATCACAAGCATGCTTATCGATGGCGAGAAGTGGGCTTGT
GAAGCTTGCGTCCGGGGTCACCGTGTCAGCAGCTGTCACCACAGTGAGGA
CTCCCGTCCAAAATGTGGCTGCACTCATGGTCAGCGCTGTACCTGTGCGC
TGAAGAAGGAACCCCACCTGGATACCGTTCCGGAGACCGGCCTCCCTCCA
CCCCCAGCTGCGACGCTGTTGGATCAGCCCAAGAAGCCGCAGCTGACCTC
GACCAAATCGGAGAGTACCTTGACCATCTTCCGCGATGGCCACCACAAGC
CGGCTCATAAGCACAACGACATGGCTCACAAATGCGGTCTGCCCTATACG
ATACCCCGTTCTCATACCATCCATGCTGGCGATGTGGCCCGCCGCTCGGT
CGACCACCTGCCTTTGGTCCAGCCCACCATGCTCAACGAGGGTTTCGCGA
ATCAACAACAGCCCGCAGAACAGTCACCTTCGCGCGGACAACATCGCCGT
GTCAAGTCTGAACATGGTTCTCCTGAGAGTGCCCCCGTCGTCTCGCCGGA
CAACGTCCCGACAACCGTTCCCCCACTCGACATCTCGTCCTTTTTCCCTC
AAGTTCAGACAGCGGAGAACGCTGGTGACGTTGGCGTTCCCGAGCCGGTC
TCGATGCCTATGAAGACCCCTCTGGACCCACTGGTCACGTCGGGGTTACC
CTTCGACATGTCATCATTCTCATCCTTCCCAACAACAGCGACATCGCCTG
TCAATTGTGTCGCATTTCAGGACCCCTACAAGGAGCCTTTCTTCACGTCA
CCGGAGGGCGACGTGTCTCTTCAGTCGACCGCATTCAGCGCCCCTCCAGT
CGATTGGTCAAGCTTCCCTCTGTACTCCTCGGAAGTACCAGCCGCGACAA
GCACTCAAGCACCTTCCTACGCAAGCTTCGATTACAACTCTATGGCACCC
GGGTTCCCAGCCCCATCATCATCCGGTGACATCTCTGAAGCGGATGAGTT
CGCGCCGATCCCTGGCTTGGGACGTACTGGCAGCGATCTGCACGATCTCA
ACAGCGTTAGCGAGGGCTCCGATATCGACCATTTCCGCATCAGCTCCGCG
TCGTCCTTCATTGGCCTTCCCCAGGCACAGCTCTTGGCATCGAATAACCT
TGAGTCGATTGACATTGACGACTTCCTCAAGTCGGCCAACGAGTCCACCG
CGGCGTTAGAGCATCAGCTCCAGGCCACGATGGGCATGGAAGCCAAGCAA
CTTCCGACCGAGGACGCCTTCGCCATGTCGAATGCTGAGACTTTCAAGCC
GGTGACTACACCGACTGCCAGCATGTCGATGACCACGCCTCCGACCGAAG
CCGCTTGGAACGTGGGGCTCTTCGACCCCAATACTGCCCCCATGAGCGAA
AACAGCAATGGCAATTTCTACGTGCCGCCATGGGTGCAGTAAACCGCCCC
TTGACCCACATTAACAAAAAAGGCCGTCCTGTCTCCCAATGCGCTCACTG
TCGCGGCCTACGCAAGTCACGGACAACCCACACTAAGTGCGAGTGTGGTG
ACAAGAAAAAGAATTGCCACAAGAATGACTCAGATCCCCATGCTACGGAT
AAGCGGGATCACAAGCATGCTTATCGATGGCGAGAAGTGGGCTTGTGAAG
CTTGCGTCCGGGGTCACCGTGTCAGCAGCTGTCACCACAGTGAGGACTCC
CGTCCAAAATGTGGCTGCACTCATGGTCAGCGCTGTACCTGTGCGCTGAA
GAAGGAACCCCACCTGGATACCGTTCCGGAGACCGGCCTCCCTCCACCCC
CAGCTGCGACGCTGTTGGATCAGCCCAAGAAGCCGCAGCTGACCTCGACC
AAATCGGAGAGTACCTTGACCATCTTCCGCGATGGCCACCACAAGCCGGC
TCATAAGCACAACGACATGGCTCACAAATGCGGTCTGCCCTATACGATAC
CCCGTTCTCATACCATCCATGCTGGCGATGTGGCCCGCCGCTCGGTCGAC
CACCTGCCTTTGGTCCAGCCCACCATGCTCAACGAGGGTTTCGCGAATCA
ACAACAGCCCGCAGAACAGTCACCTTCGCGCGGACAACATCGCCGTGTCA
AGTCTGAACATGGTTCTCCTGAGAGTGCCCCCGTCGTCTCGCCGGACAAC
GTCCCGACAACCGTTCCCCCACTCGACATCTCGTCCTTTTTCCCTCAAGT
TCAGACAGCGGAGAACGCTGGTGACGTTGGCGTTCCCGAGCCGGTCTCGA
TGCCTATGAAGACCCCTCTGGACCCACTGGTCACGTCGGGGTTACCCTTC
GACATGTCATCATTCTCATCCTTCCCAACAACAGCGACATCGCCTGTCAA
TTGTGTCGCATTTCAGGACCCCTACAAGGAGCCTTTCTTCACGTCACCGG
AGGGCGACGTGTCTCTTCAGTCGACCGCATTCAGCGCCCCTCCAGTCGAT
TGGTCAAGCTTCCCTCTGTACTCCTCGGAAGTACCAGCCGCGACAAGCAC
TCAAGCACCTTCCTACGCAAGCTTCGATTACAACTCTATGGCACCCGGGT
TCCCAGCCCCATCATCATCCGGTGACATCTCTGAAGCGGATGAGTTCGCG
CCGATCCCTGGCTTGGGACGTACTGGCAGCGATCTGCACGATCTCAACAG
CGTTAGCGAGGGCTCCGATATCGACCATTTCCGCATCAGCTCCGCGTCGT
CCTTCATTGGCCTTCCCCAGGCACAGCTCTTGGCATCGAATAACCTTGAG
TCGATTGACATTGACGACTTCCTCAAGTCGGCCAACGAGTCCACCGCGGC
GTTAGAGCATCAGCTCCAGGCCACGATGGGCATGGAAGCCAAGCAACTTC
CGACCGAGGACGCCTTCGCCATGTCGAATGCTGAGACTTTCAAGCCGGTG
ACTACACCGACTGCCAGCATGTCGATGACCACGCCTCCGACCGAAGCCGC
TTGGAACGTGGGGCTCTTCGACCCCAATACTGCCCCCATGAGCGAAAACA
GCAATGGCAATTTCTACGTGCCGCCATGGGTGCAGTAAACCGCCCCTTGA
CCCACATTAACAAAAAAGGCCGTCCTGTCTCCCAATGCGCTCACTGTCGC
GGCCTACGCAAGTCACGGACAACCCACACTAAGTGCGAGTGTGGTGACAA
GAAAAAGAATTGCCACAAGAATGACTCAGATCCCCATGCTACGGATAAGC
GGGATCACAAGCATGCTTATCGATGGCGAGAAGTGGGCTTGTGAAGCTTG
CGTCCGGGGTCACCGTGTCAGCAGCTGTCACCACAGTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005507 | copper ion binding |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002684-T1.utr3p1 | KJC3_002684-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002684-T1.utr5p1 | KJC3_002684-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036395 |
| DBxref | InterPro:IPR001083 |
| DBxref | PFAM:PF00649 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3280358..3283646 - |
|
