You are here

Home

KJC3_002721-T1, KJC3_002721-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002721-T1
Unique NameKJC3_002721-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:3382968..3384796+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002721-T1 ID=KJC3_002721-T1|Name=KJC3_002721-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1829bp|location=Sequence derived from alignment at ch2:3382968..3384796+ (Aspergillus niger KJC3)
TAACAGACACGTGACGTAATTGCCTAAAGGGGAAGAAATGAGCGTTACTG
CTGGACATCACGGTTTGGATCAAACTTATCTGAAGTACTCCGTCCTTAAG
TTGATTCTAACCTTATTTCTGCATTAGTTTCGCATAAATTCGCTAGTCTT
CATATTGAATAATCAAGCCCCTCACCTGCACCCTTTATATTTGATTGGAC
TTCCTCACGCGTGGAACACGTGAACACGTGATAACGTGTTTCTGTATACC
TGCGGGTCTACAACTTGAAACGTTCGCGCTGTTGACCTGACGATTATAAT
GACTGGAACGAGCACTACAGGAGATAGTGGAGTATTGAAAGAGGCAGTAA
CGCCCCTTTTCCAAGGGAAGCAGTTCTGGTTGTCTCACAACATCCCCCAA
CGGAAGTGGTTCAAGGAATTAATCGAGGTACTACAACTATACATGGCTTT
TAAGAACGCGTGACTAATTTATCTATGGAAAAACGGCGGTACTATACGGC
TGCTGGAGAAGGATGCAGATATCAGATTGGTTGATCATAAGAGAAAGAAC
TTACCCTCTGACACGTGAGGTTTCCTGCCATTTCCATCCTTGACTCACTT
GTGTAATCGCATCGCTGGAAAACAGCGCACACTGTTTTAGCCTTCTACCA
TCCAGTGGACACTTACAGGATATAGGTACTCTTTCAAATATGTCGAAGAC
TCACACCGCCTGGGGAAGCTGCAGAATCTAGAGAATTATAGAGCCGGGCC
TTCTGAAGCACGGCCCGTAGGGGCTACCAACATTCCCACCAGAGGTCATA
AGATCCCCTATACTCTCGAAGATGACCAGTTGCTCTGGGACTGGATGCAA
CCCCACGAGAGAAACCCTAAGGCTTCCATTAGAGGCAACAAAATCTATCA
AGAGCTAGCCGAGAAGGTATCGAGAACCCCCTCTGAGCTGTGAAATGCAG
GCATACTAAGCGTCATCCCACTAGCATCCAAGGCACACGTATCAATCATA
TCGAGATCGGTACCTCAAAAGGCTCAAGGGACATCCACGTCCTGGTGGTA
TGCCAGAATCAACTGATCAACCTGCGCCTGATGGGCCCTCCAATTTAGCT
ACTCGCCTGGTCCAGTCTGAGCCTCGAGGAGGGTCTGCACAAGGGGTTGA
GCCTACTGCCATGCAAGCAAATGACAAGAAAAGGAAACGGGCTTCGGAGG
ATACTCCTGGGGAAGGCAATGTAGACAGTACTAATAAGCCAAGTTTGAAG
AAAAGAGTCACCGAAGTCAATATCGACCTTCCAGACCCTTTCATCTCCGG
ACCTCAAACGAAACTGGCTGCAGTACCACATTCAGCGACAGCATCCAACG
GTCAGCGACCAACTCCTGGGGCAAAAGAGGCGAGAGAACGCGGGGCCACT
GAAGGATCGAAAGCTCCAGCCAAGGAGCCACGCCAGCCTTCGCAGCCAGA
CCCCCTGTTTCTAGAGCTGCCATTTTTGCCTTCTGACGATGAGCCTGAAG
AGGAAGATATGGAGCAGGATATCGACGCATGGATCGACGAGCGACTTCTT
AACGGAAAGGCTCAGCATGAAGAACAAATACACCTGGCACTGCGGTGCAC
CAGCATGGATCCAGATTTAGCTGACAGGGTCCTGGCTATCCTAGTAGAAG
GAAAACCTATACCGGATGATATGCCTGGTGTTTGGACACCTGAAGATGAC
AAATGCATAGAAGGAAACGAGACTCGAGGCATCCAACGAGTCATGGAGAA
GCATGGTACGGAGGCCTTCAACAATCGCTGGGAGTACCTCAGCATGGTCA
GAGAGGCCGGTCTTTTAGATACCCTTTGA
back to top

Coding sequence (CDS) from alignment at ch2:3382968..3384796+

>KJC3_002721-T1 ID=KJC3_002721-T1|Name=KJC3_002721-T1|organism=Aspergillus niger KJC3|type=CDS|length=1854bp|location=Sequence derived from alignment at ch2:3382968..3384796+ (Aspergillus niger KJC3)
ATGCAACCCCACGAGAGAAACCCTAAGGCTTCCATTAGAGGCAACAAAAT
CTATCAAGAGCTAGCCGAGAAGCATCCAAGGCACACGTATCAATCATATC
GAGATCGGTACCTCAAAAGGCTCAAGGGACATCCACGTCCTGGTGGTATG
CCAGAATCAACTGATCAACCTGCGCCTGATGGGCCCTCCAATTTAGCTAC
TCGCCTGGTCCAGTCTGAGCCTCGAGGAGGGTCTGCACAAGGGGTTGAGC
CTACTGCCATGCAAGCAAATGACAAGAAAAGGAAACGGGCTTCGGAGGAT
ACTCCTGGGGAAGGCAATGTAGACAGTACTAATAAGCCAAGTTTGAAGAA
AAGAGTCACCGAAGTCAATATCGACCTTCCAGACCCTTTCATCTCCGGAC
CTCAAACGAAACTGGCTGCAGTACCACATTCAGCGACAGCATCCAACGGT
CAGCGACCAACTCCTGGGGCAAAAGAGGCGAGAGAACGCGGGGCCACTGA
AGGATCGAAAGCTCCAGCCAAGGAGCCACGCCAGCCTTCGCAGCCAGACC
CCCTGTTTCTAGAGCTGCCATTTTTGCCTTCTGACGATGAGCCTGAAGAG
GAAGATATGGAGCAGGATATCGACGCATGGATCGACGAGCGACTTCTTAA
CGGAAAGGCTCAGCATGAAGAACAAATACACCTGGCACTGCGGTGCACCA
GCATGGATCCAGATTTAGCTGACAGGGTCCTGGCTATCCTAGTAGAAGGA
AAACCTATACCGGATGATATGCCTGGTGTTTGGACACCTGAAGATGACAA
ATGCATAGAAGGAAACGAGACTCGAGGCATCCAACGAGTCATGGAGAAGC
ATGGTACGGAGGCCTTCAACAATCGCTGGGAGTACCTCAGCATGGTCAGA
GAGGCCGGTCTTTTAGATACCCTTTGAATGCAACCCCACGAGAGAAACCC
TAAGGCTTCCATTAGAGGCAACAAAATCTATCAAGAGCTAGCCGAGAAGC
ATCCAAGGCACACGTATCAATCATATCGAGATCGGTACCTCAAAAGGCTC
AAGGGACATCCACGTCCTGGTGGTATGCCAGAATCAACTGATCAACCTGC
GCCTGATGGGCCCTCCAATTTAGCTACTCGCCTGGTCCAGTCTGAGCCTC
GAGGAGGGTCTGCACAAGGGGTTGAGCCTACTGCCATGCAAGCAAATGAC
AAGAAAAGGAAACGGGCTTCGGAGGATACTCCTGGGGAAGGCAATGTAGA
CAGTACTAATAAGCCAAGTTTGAAGAAAAGAGTCACCGAAGTCAATATCG
ACCTTCCAGACCCTTTCATCTCCGGACCTCAAACGAAACTGGCTGCAGTA
CCACATTCAGCGACAGCATCCAACGGTCAGCGACCAACTCCTGGGGCAAA
AGAGGCGAGAGAACGCGGGGCCACTGAAGGATCGAAAGCTCCAGCCAAGG
AGCCACGCCAGCCTTCGCAGCCAGACCCCCTGTTTCTAGAGCTGCCATTT
TTGCCTTCTGACGATGAGCCTGAAGAGGAAGATATGGAGCAGGATATCGA
CGCATGGATCGACGAGCGACTTCTTAACGGAAAGGCTCAGCATGAAGAAC
AAATACACCTGGCACTGCGGTGCACCAGCATGGATCCAGATTTAGCTGAC
AGGGTCCTGGCTATCCTAGTAGAAGGAAAACCTATACCGGATGATATGCC
TGGTGTTTGGACACCTGAAGATGACAAATGCATAGAAGGAAACGAGACTC
GAGGCATCCAACGAGTCATGGAGAAGCATGGTACGGAGGCCTTCAACAAT
CGCTGGGAGTACCTCAGCATGGTCAGAGAGGCCGGTCTTTTAGATACCCT
TTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002721KJC3_002721Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002721-T1KJC3_002721-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002721-T1.utr5p1KJC3_002721-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_002721-T1.utr5p2KJC3_002721-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_002721-T1.utr5p3KJC3_002721-T1.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002721-T1.exon1KJC3_002721-T1.exon1Aspergillus niger KJC3exon
KJC3_002721-T1.exon2KJC3_002721-T1.exon2Aspergillus niger KJC3exon
KJC3_002721-T1.exon3KJC3_002721-T1.exon3Aspergillus niger KJC3exon
KJC3_002721-T1.exon4KJC3_002721-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002721-T1.cdsKJC3_002721-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR009057
DBxrefInterPro:IPR021661
DBxrefInterPro:IPR015010
DBxrefInterPro:IPR038104
DBxrefPFAM:PF11626
DBxrefPFAM:PF08914
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:3382968..3384796 +
Powered by Drupal