You are here

Home

KJC3_002769-T1, KJC3_002769-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002769-T1
Unique NameKJC3_002769-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:3536763..3538658-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002769-T1 ID=KJC3_002769-T1|Name=KJC3_002769-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1896bp|location=Sequence derived from alignment at ch2:3536763..3538658- (Aspergillus niger KJC3)
GTCCGGTAGTATCAATCCGCCGGCGACAGATTACCTGGGCTAAGCCGCGA
CTATTGGCTGCCATCTGAAAGCGCAGCTGTTAATAATATCATCATTGCTG
CTCGGGGACTGTCCTCCATTTCCCGGTTTGTCGATAATTAATGACTTTCT
CGTGCGACTGAGAGCCACCGGTTCCCACTCCTGAGAGCAACTAACCGTGA
CTAGTTGGTCCTTTGACCCTCTTACCGATTCCTCAGTAAGTCAGGACTAG
GGGAATATACGAGCGATTGACACGGAACCTGGGCTTAAAACTGACAGGGA
CCGGGCAGGACTAGGCGCTCCCCTCCAGCGCGCGGCGGCGCAAAAGCGAA
CGGTCATGCGTGCCCATAGATCGGACCAGCTCTAGTTTCACCGCAAAGCA
AAGAGGCATCAAAAGAAGAAATATTCTTTTCTTGTCGCCATCACTAGGGA
ACAACCAACCGACCCTGGGGAAATTGCCGCCTTCTTTTTTTCGCGCCGCT
TCGACCTCACCCTCACCTTCTTTTCCTGCTCAGCTGCTCGGAGCGTGGGA
AACTTGCTACGACCGCCACTCTTTTTTCGAATCCACCCGCCCATTATCTC
CCAGCACACCGGTTAACTACTACCACCTACTATTTTCCTCTCGCATCTTT
CCCCAACTACACCCACATTATCCTCTGCTTTTCCCTGCCCGGAAAGAGAA
GGCTCAGTTGTTCTCCCCTTTCAGCAACCCACTCCACCCCCACTTAACCT
TACAAAAATTCCTCTGCTCAGGAAGTGTCGATATATTTCTCCCACCCGTC
GTCGATCGCCCACCAGCCGAGACAAGCAGCGCCCTTTCGACCTGCTTCCA
CCAAGTCAAAATCTTCCCCCTACTTAAACTGTCCCGTCACCCTCTTTGCT
CTGATCGCGCAGACGACACAAGGCGCAAACCCTTTCTTTAACCAACATGG
CGGGTATCTTTCGCACGATCTATGACTGGCTCCTGAGGATGTTCTGGTAA
GTGGGCCGCCGTCCCAATAAGTAATCGCTTTTTCTCCGGGAATGGTTCCC
CCCTCCTCGGCCCGTCCCCGCAGATAAGGAATCATTCGATTTGCTAAGAT
GATATATTTCGCACCCGCAGGGCGACAGAGATGGATGTCACCATGATTGG
TCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCGCGTGCTTGCGGTATGTC
TTTTCACCCCCACGGCAACTGAACATCTTCCCGTGTTATCGGTCCTCGGC
GCTAATCCCGCAGTATAGGGCGGCGAGTTCACTGTAGAGTAAGTCTCCAT
CGTGTAGGGCCTGGCCTGACTGCGCGACACTGGGTTGTCTGGCTAAACCT
TGTTTCAGTTCTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAA
GGGCCATGTGACTCTCAAATGGTTGGTGACCCAGAGCTGAGCCTTGAGAC
GCCTGTGCGCAATCAATGTATCTAATATCCATCCAGCTGGGATCTAGGTG
GACAGCCACGGTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAAT
GCGATCGTGTAAGTGCCTCGACTTTGTCTGACACAGGTCTCGGTATCCTA
GCAGCGCTAACAACCCGACCAGATACATTGTGGATGCAGCAGATCGGGCT
GCCTTACCCGTAGCCAAGGAGGAATTGCATGAGCTAATGGGCAAAGAGAC
GCTCAATGGGATTCCGCTGTTGGTCCTCGGGAATAAGTCCGACCTTCCGG
AGAAGCTGTCGGTCGACGACCTGATCCACGAGATGGACCTGAAATCCATC
ACTCATCGCGAAGTGAGCTGTTATGGGATCAGCGCTAAAGAGGAGACAAA
CCTCGATGCTGTTCTGCATTGGTTAATTGCTCGAGCCAGTCGATGA
back to top

Coding sequence (CDS) from alignment at ch2:3536763..3538658-

>KJC3_002769-T1 ID=KJC3_002769-T1|Name=KJC3_002769-T1|organism=Aspergillus niger KJC3|type=CDS|length=3312bp|location=Sequence derived from alignment at ch2:3536763..3538658- (Aspergillus niger KJC3)
ATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTAGCCAAGGAGG
AATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGATTCCGCTGTTG
GTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGGTCGACGACCT
GATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAAGTGAGCTGTT
ATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGTTCTGCATTGG
TTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGACAGCCACGGT
TTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGCGATCGTTTCT
ATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGGGCCATGTGAC
TCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGATGGATGTCAC
CATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCGCGTGCTTG
CGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCTGAGGATGTTC
TGATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTAGCCAAGGA
GGAATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGATTCCGCTGT
TGGTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGGTCGACGAC
CTGATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAAGTGAGCTG
TTATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGTTCTGCATT
GGTTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGACAGCCACG
GTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGCGATCGTTT
CTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGGGCCATGTG
ACTCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGATGGATGTC
ACCATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCGCGTGCT
TGCGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCTGAGGATGT
TCTGATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTAGCCAAG
GAGGAATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGATTCCGCT
GTTGGTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGGTCGACG
ACCTGATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAAGTGAGC
TGTTATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGTTCTGCA
TTGGTTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGACAGCCA
CGGTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGCGATCGT
TTCTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGGGCCATG
TGACTCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGATGGATG
TCACCATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCGCGTG
CTTGCGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCTGAGGAT
GTTCTGATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTAGCCA
AGGAGGAATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGATTCCG
CTGTTGGTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGGTCGA
CGACCTGATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAAGTGA
GCTGTTATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGTTCTG
CATTGGTTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGACAGC
CACGGTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGCGATC
GTTTCTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGGGCCA
TGTGACTCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGATGGA
TGTCACCATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCGCG
TGCTTGCGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCTGAGG
ATGTTCTGATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTAGC
CAAGGAGGAATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGATTC
CGCTGTTGGTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGGTC
GACGACCTGATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAAGT
GAGCTGTTATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGTTC
TGCATTGGTTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGACA
GCCACGGTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGCGA
TCGTTTCTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGGGC
CATGTGACTCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGATG
GATGTCACCATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTGCG
CGTGCTTGCGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCTGA
GGATGTTCTGATACATTGTGGATGCAGCAGATCGGGCTGCCTTACCCGTA
GCCAAGGAGGAATTGCATGAGCTAATGGGCAAAGAGACGCTCAATGGGAT
TCCGCTGTTGGTCCTCGGGAATAAGTCCGACCTTCCGGAGAAGCTGTCGG
TCGACGACCTGATCCACGAGATGGACCTGAAATCCATCACTCATCGCGAA
GTGAGCTGTTATGGGATCAGCGCTAAAGAGGAGACAAACCTCGATGCTGT
TCTGCATTGGTTAATTGCTCGAGCCAGTCGATGACTGGGATCTAGGTGGA
CAGCCACGGTTTCGACCGATGTGGGAGCGATACTGTCGGGGAGTAAATGC
GATCGTTTCTATTCCCACGATCGGGTTCAACACGAAACGAGTCCAAAAGG
GCCATGTGACTCTCAAATGGGCGGCGAGTTCACTGTAGAGGCGACAGAGA
TGGATGTCACCATGATTGGTCTCCAGAATGCAGGAAAGTCTTCGTTGTTG
CGCGTGCTTGCGATGGCGGGTATCTTTCGCACGATCTATGACTGGCTCCT
GAGGATGTTCTG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002769KJC3_002769Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002769-T1KJC3_002769-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002769-T1.cdsKJC3_002769-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002769-T1.exon8KJC3_002769-T1.exon8Aspergillus niger KJC3exon
KJC3_002769-T1.exon7KJC3_002769-T1.exon7Aspergillus niger KJC3exon
KJC3_002769-T1.exon6KJC3_002769-T1.exon6Aspergillus niger KJC3exon
KJC3_002769-T1.exon5KJC3_002769-T1.exon5Aspergillus niger KJC3exon
KJC3_002769-T1.exon4KJC3_002769-T1.exon4Aspergillus niger KJC3exon
KJC3_002769-T1.exon3KJC3_002769-T1.exon3Aspergillus niger KJC3exon
KJC3_002769-T1.exon2KJC3_002769-T1.exon2Aspergillus niger KJC3exon
KJC3_002769-T1.exon1KJC3_002769-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002769-T1.utr5p3KJC3_002769-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_002769-T1.utr5p2KJC3_002769-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_002769-T1.utr5p1KJC3_002769-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR006689
DBxrefPFAM:PF09439
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF04670
DBxrefPFAM:PF00025
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:3536763..3538658 -
Powered by Drupal