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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3566313..3568500- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002779-T1 ID=KJC3_002779-T1|Name=KJC3_002779-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2188bp|location=Sequence derived from alignment at ch2:3566313..3568500- (Aspergillus niger KJC3)
CCTCCCTCTCCCTGTTTTCCCACAGTTCTCTCGCGCCTTTTTCCTGCCTT
CCCATGGATGGCTCTATGCATCGATCCAAGCGCCGTCGCCTTGATACCAC
TCCCAAGCCCCAGAATGGCTTCATCCATTCGCCCGTAGAATCCTCGTCCG
ACGAGCTGGCCGCGGGCTCCGACCACGACGAGGCCGAACGCCGCCGCGCC
AGCTGGTCCATCCAGAAGGCATATCCCCCACAGCGCCCATACCGTCGCTC
GCGCAGCTTCAGCGGCTCCGAGAGCCCCGATGAGCTCGCTGTCGACGCGA
AGGAGTACTGGTCGGCGAGGAACCGCGGTCGCAGTCCATCCTCGCCCTCC
GAGCCGAGCGCGGAGCCGTCCTCGGAGCGATATCTTGATCACGACCACGA
CGAAGCGGAAGAAGAGGAGGTAAACGATGCTCCCGAGCCTGAGTTCGACC
CCGAAAATGATCCGGAGCAGGAAGACGGCGGCGCCGAGGGCGATGTCGAA
GAGACCGCAACCGCTGCCGACGGTGATGTAGCTGTTGATCAGTCGTTTGG
CGAACGGTCGCCCACCCCGGTGCCGCAGCCACCACCACCACCGCCCAAAC
CGGACAAAGTGACTTATCACCAGAAGTATTTACTACGAGGTCATATTCGA
GGAGTCTCGGCAGTACGGTTCTCGCCGGACTCTTCGATGATCGCTAGCGG
AGGTGCGTGTTCCTTTATGCCCCCCTCCCTTCTCCCTAATTTTCCTTTGT
ATCAATTGGATCGCTGACTGTTCTGCTAGGGGCGGATGGGGCTGTCAAGG
TATGGGACACAGTGACGGGTCGGTTGATCCATACGTTCGAGGGTCATCTG
GCAGGCATTTCGACCATCTCGTGGAGTCCGGACGGAGCGACCATTGCGTC
GGGATCAGATGACAAGACTATTCGCCTATGGAATGTATTGACGGTGGGTT
TCACATGTTGTAAAATAGCGTTGGGTTATATGCGTCGGAAACTAATAAGT
CGCAACAGGGCAAGGCACATCCGATCCCCTTCGTCGGCCACCACAACTAC
GTCTACCAGATTGCATTTTCGCCCAAAGGCAACATGCTCGTGAGCGGATC
CTACGATGAAGCGGTATTTTTATGGGATGTGCGATCAGCACGAGTGATGC
GGTCGCTGCCCGCACACTCCGACCCGGTCGGAGGCATTGACGTCGTCTGG
GACGGCACCCTCATTGCCTCGTGCGCGACAGACGGATTGATTCGGATCTG
GGATACCGCGACAGGCCAGTGTCTGCGGACGCTGGTGCACGAAGACAACC
CGCCTGTGACGGCGGTGAAATTCTCCCCGAATGGCAAGTACGTGTTGGCG
TGGACGCTGGACGACTGCGTGCGACTGTGGGACTACGTCGAAGGGCGGTG
CATCAAGACGTACCAGGGTCATGGCAATGTGAAATACAGTCTGCAGGGCG
GATTCGGGGTATATGGGGAGCGGGGCGGACCGCGGTATGCGTTCGTCGTC
AGCGGCAGCGAGGACGGAGCCGTGCTGTGCTGGGACGTGGTCAGCAAGCA
AGTGCTGCAACGTCTGGAGGGCCATAACGGGGTAGTGCTGGGAGTGGACA
CATGCACGCTGGAGGAGTCGCGACTAATGGTGAGCTGCGGGTTAGACGGG
ACCGTGCGGGTATGGGAGGAAGTGGATGCAGAAGCAGCAGACAACACCAC
TAACACCTCCACCATCAACACACCTCCCCAAATCAATGGAGACGGAGTGA
ATGGAGACATGGCCCAATTGAATGGGGTCATGGAAGTTGAAAAACCTAAC
GGCCAACCAGAAGCAAACCACGACCACAACCACGACCACAACCTCGAGCA
ACCGAACGGACACAAAGATAACCCGGAACCGGAACCGGAAGACACCGAAA
TGGGCGAAGCCACCGGCCCAGACGGGTAACTCCAATGTACATTATTATTA
TAACCAGGAAACAAACAAACCAAAGATAAAAAAAGAGAACAAAAAAGGCT
GGCTGGCTGGATGGGTGAATGGACGGACGGACGGGCGTTCAGGAATGTAT
AATAGACACGAGGGATGATGAGATACAGTACTCGATACATTATTCAACTA
ACCACAAACAACTACTATAATATGATGAGTGGGTGTCCACATACACACAG
ACATCCACCGACTACTACCTACCTAACCTAAACACCTG back to topCoding sequence (CDS) from alignment at ch2:3566313..3568500- >KJC3_002779-T1 ID=KJC3_002779-T1|Name=KJC3_002779-T1|organism=Aspergillus niger KJC3|type=CDS|length=5202bp|location=Sequence derived from alignment at ch2:3566313..3568500- (Aspergillus niger KJC3)
GGCAAGGCACATCCGATCCCCTTCGTCGGCCACCACAACTACGTCTACCA
GATTGCATTTTCGCCCAAAGGCAACATGCTCGTGAGCGGATCCTACGATG
AAGCGGTATTTTTATGGGATGTGCGATCAGCACGAGTGATGCGGTCGCTG
CCCGCACACTCCGACCCGGTCGGAGGCATTGACGTCGTCTGGGACGGCAC
CCTCATTGCCTCGTGCGCGACAGACGGATTGATTCGGATCTGGGATACCG
CGACAGGCCAGTGTCTGCGGACGCTGGTGCACGAAGACAACCCGCCTGTG
ACGGCGGTGAAATTCTCCCCGAATGGCAAGTACGTGTTGGCGTGGACGCT
GGACGACTGCGTGCGACTGTGGGACTACGTCGAAGGGCGGTGCATCAAGA
CGTACCAGGGTCATGGCAATGTGAAATACAGTCTGCAGGGCGGATTCGGG
GTATATGGGGAGCGGGGCGGACCGCGGTATGCGTTCGTCGTCAGCGGCAG
CGAGGACGGAGCCGTGCTGTGCTGGGACGTGGTCAGCAAGCAAGTGCTGC
AACGTCTGGAGGGCCATAACGGGGTAGTGCTGGGAGTGGACACATGCACG
CTGGAGGAGTCGCGACTAATGGTGAGCTGCGGGTTAGACGGGACCGTGCG
GGTATGGGAGGAAGTGGATGCAGAAGCAGCAGACAACACCACTAACACCT
CCACCATCAACACACCTCCCCAAATCAATGGAGACGGAGTGAATGGAGAC
ATGGCCCAATTGAATGGGGTCATGGAAGTTGAAAAACCTAACGGCCAACC
AGAAGCAAACCACGACCACAACCACGACCACAACCTCGAGCAACCGAACG
GACACAAAGATAACCCGGAACCGGAACCGGAAGACACCGAAATGGGCGAA
GCCACCGGCCCAGACGGGTAAGGGCGGATGGGGCTGTCAAGGTATGGGAC
ACAGTGACGGGTCGGTTGATCCATACGTTCGAGGGTCATCTGGCAGGCAT
TTCGACCATCTCGTGGAGTCCGGACGGAGCGACCATTGCGTCGGGATCAG
ATGACAAGACTATTCGCCTATGGAATGTATTGACGATGGATGGCTCTATG
CATCGATCCAAGCGCCGTCGCCTTGATACCACTCCCAAGCCCCAGAATGG
CTTCATCCATTCGCCCGTAGAATCCTCGTCCGACGAGCTGGCCGCGGGCT
CCGACCACGACGAGGCCGAACGCCGCCGCGCCAGCTGGTCCATCCAGAAG
GCATATCCCCCACAGCGCCCATACCGTCGCTCGCGCAGCTTCAGCGGCTC
CGAGAGCCCCGATGAGCTCGCTGTCGACGCGAAGGAGTACTGGTCGGCGA
GGAACCGCGGTCGCAGTCCATCCTCGCCCTCCGAGCCGAGCGCGGAGCCG
TCCTCGGAGCGATATCTTGATCACGACCACGACGAAGCGGAAGAAGAGGA
GGTAAACGATGCTCCCGAGCCTGAGTTCGACCCCGAAAATGATCCGGAGC
AGGAAGACGGCGGCGCCGAGGGCGATGTCGAAGAGACCGCAACCGCTGCC
GACGGTGATGTAGCTGTTGATCAGTCGTTTGGCGAACGGTCGCCCACCCC
GGTGCCGCAGCCACCACCACCACCGCCCAAACCGGACAAAGTGACTTATC
ACCAGAAGTATTTACTACGAGGTCATATTCGAGGAGTCTCGGCAGTACGG
TTCTCGCCGGACTCTTCGATGATCGCTAGCGGAGGGCAAGGCACATCCGA
TCCCCTTCGTCGGCCACCACAACTACGTCTACCAGATTGCATTTTCGCCC
AAAGGCAACATGCTCGTGAGCGGATCCTACGATGAAGCGGTATTTTTATG
GGATGTGCGATCAGCACGAGTGATGCGGTCGCTGCCCGCACACTCCGACC
CGGTCGGAGGCATTGACGTCGTCTGGGACGGCACCCTCATTGCCTCGTGC
GCGACAGACGGATTGATTCGGATCTGGGATACCGCGACAGGCCAGTGTCT
GCGGACGCTGGTGCACGAAGACAACCCGCCTGTGACGGCGGTGAAATTCT
CCCCGAATGGCAAGTACGTGTTGGCGTGGACGCTGGACGACTGCGTGCGA
CTGTGGGACTACGTCGAAGGGCGGTGCATCAAGACGTACCAGGGTCATGG
CAATGTGAAATACAGTCTGCAGGGCGGATTCGGGGTATATGGGGAGCGGG
GCGGACCGCGGTATGCGTTCGTCGTCAGCGGCAGCGAGGACGGAGCCGTG
CTGTGCTGGGACGTGGTCAGCAAGCAAGTGCTGCAACGTCTGGAGGGCCA
TAACGGGGTAGTGCTGGGAGTGGACACATGCACGCTGGAGGAGTCGCGAC
TAATGGTGAGCTGCGGGTTAGACGGGACCGTGCGGGTATGGGAGGAAGTG
GATGCAGAAGCAGCAGACAACACCACTAACACCTCCACCATCAACACACC
TCCCCAAATCAATGGAGACGGAGTGAATGGAGACATGGCCCAATTGAATG
GGGTCATGGAAGTTGAAAAACCTAACGGCCAACCAGAAGCAAACCACGAC
CACAACCACGACCACAACCTCGAGCAACCGAACGGACACAAAGATAACCC
GGAACCGGAACCGGAAGACACCGAAATGGGCGAAGCCACCGGCCCAGACG
GGTAAGGGCGGATGGGGCTGTCAAGGTATGGGACACAGTGACGGGTCGGT
TGATCCATACGTTCGAGGGTCATCTGGCAGGCATTTCGACCATCTCGTGG
AGTCCGGACGGAGCGACCATTGCGTCGGGATCAGATGACAAGACTATTCG
CCTATGGAATGTATTGACGATGGATGGCTCTATGCATCGATCCAAGCGCC
GTCGCCTTGATACCACTCCCAAGCCCCAGAATGGCTTCATCCATTCGCCC
GTAGAATCCTCGTCCGACGAGCTGGCCGCGGGCTCCGACCACGACGAGGC
CGAACGCCGCCGCGCCAGCTGGTCCATCCAGAAGGCATATCCCCCACAGC
GCCCATACCGTCGCTCGCGCAGCTTCAGCGGCTCCGAGAGCCCCGATGAG
CTCGCTGTCGACGCGAAGGAGTACTGGTCGGCGAGGAACCGCGGTCGCAG
TCCATCCTCGCCCTCCGAGCCGAGCGCGGAGCCGTCCTCGGAGCGATATC
TTGATCACGACCACGACGAAGCGGAAGAAGAGGAGGTAAACGATGCTCCC
GAGCCTGAGTTCGACCCCGAAAATGATCCGGAGCAGGAAGACGGCGGCGC
CGAGGGCGATGTCGAAGAGACCGCAACCGCTGCCGACGGTGATGTAGCTG
TTGATCAGTCGTTTGGCGAACGGTCGCCCACCCCGGTGCCGCAGCCACCA
CCACCACCGCCCAAACCGGACAAAGTGACTTATCACCAGAAGTATTTACT
ACGAGGTCATATTCGAGGAGTCTCGGCAGTACGGTTCTCGCCGGACTCTT
CGATGATCGCTAGCGGAGGGCAAGGCACATCCGATCCCCTTCGTCGGCCA
CCACAACTACGTCTACCAGATTGCATTTTCGCCCAAAGGCAACATGCTCG
TGAGCGGATCCTACGATGAAGCGGTATTTTTATGGGATGTGCGATCAGCA
CGAGTGATGCGGTCGCTGCCCGCACACTCCGACCCGGTCGGAGGCATTGA
CGTCGTCTGGGACGGCACCCTCATTGCCTCGTGCGCGACAGACGGATTGA
TTCGGATCTGGGATACCGCGACAGGCCAGTGTCTGCGGACGCTGGTGCAC
GAAGACAACCCGCCTGTGACGGCGGTGAAATTCTCCCCGAATGGCAAGTA
CGTGTTGGCGTGGACGCTGGACGACTGCGTGCGACTGTGGGACTACGTCG
AAGGGCGGTGCATCAAGACGTACCAGGGTCATGGCAATGTGAAATACAGT
CTGCAGGGCGGATTCGGGGTATATGGGGAGCGGGGCGGACCGCGGTATGC
GTTCGTCGTCAGCGGCAGCGAGGACGGAGCCGTGCTGTGCTGGGACGTGG
TCAGCAAGCAAGTGCTGCAACGTCTGGAGGGCCATAACGGGGTAGTGCTG
GGAGTGGACACATGCACGCTGGAGGAGTCGCGACTAATGGTGAGCTGCGG
GTTAGACGGGACCGTGCGGGTATGGGAGGAAGTGGATGCAGAAGCAGCAG
ACAACACCACTAACACCTCCACCATCAACACACCTCCCCAAATCAATGGA
GACGGAGTGAATGGAGACATGGCCCAATTGAATGGGGTCATGGAAGTTGA
AAAACCTAACGGCCAACCAGAAGCAAACCACGACCACAACCACGACCACA
ACCTCGAGCAACCGAACGGACACAAAGATAACCCGGAACCGGAACCGGAA
GACACCGAAATGGGCGAAGCCACCGGCCCAGACGGGTAAGGGCGGATGGG
GCTGTCAAGGTATGGGACACAGTGACGGGTCGGTTGATCCATACGTTCGA
GGGTCATCTGGCAGGCATTTCGACCATCTCGTGGAGTCCGGACGGAGCGA
CCATTGCGTCGGGATCAGATGACAAGACTATTCGCCTATGGAATGTATTG
ACGATGGATGGCTCTATGCATCGATCCAAGCGCCGTCGCCTTGATACCAC
TCCCAAGCCCCAGAATGGCTTCATCCATTCGCCCGTAGAATCCTCGTCCG
ACGAGCTGGCCGCGGGCTCCGACCACGACGAGGCCGAACGCCGCCGCGCC
AGCTGGTCCATCCAGAAGGCATATCCCCCACAGCGCCCATACCGTCGCTC
GCGCAGCTTCAGCGGCTCCGAGAGCCCCGATGAGCTCGCTGTCGACGCGA
AGGAGTACTGGTCGGCGAGGAACCGCGGTCGCAGTCCATCCTCGCCCTCC
GAGCCGAGCGCGGAGCCGTCCTCGGAGCGATATCTTGATCACGACCACGA
CGAAGCGGAAGAAGAGGAGGTAAACGATGCTCCCGAGCCTGAGTTCGACC
CCGAAAATGATCCGGAGCAGGAAGACGGCGGCGCCGAGGGCGATGTCGAA
GAGACCGCAACCGCTGCCGACGGTGATGTAGCTGTTGATCAGTCGTTTGG
CGAACGGTCGCCCACCCCGGTGCCGCAGCCACCACCACCACCGCCCAAAC
CGGACAAAGTGACTTATCACCAGAAGTATTTACTACGAGGTCATATTCGA
GGAGTCTCGGCAGTACGGTTCTCGCCGGACTCTTCGATGATCGCTAGCGG
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002779-T1.utr3p1 | KJC3_002779-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002779-T1.utr5p1 | KJC3_002779-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR019775 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | InterPro:IPR020472 |
| DBxref | PFAM:PF00400 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3566313..3568500 - |
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