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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3636335..3638266+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002808-T1 ID=KJC3_002808-T1|Name=KJC3_002808-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1932bp|location=Sequence derived from alignment at ch2:3636335..3638266+ (Aspergillus niger KJC3)
AATTCAGCCAGTCTCCTGCTACTCAACCGGGTTTGTGGACGACCGACAAT
TGAAATTTAATTTCCCGACACCCTACACGTCCCACCGGTTCATCATGTCG
AAGAGATCTGCCGACGTTTCCGACGAGCAGAACGCCGCCCTCAAGGCCGG
TGAGCGTCCCGTCGTCGACGCCCCTCCCGACGAGGTGGGGGAGTTCGAGG
ATGAGTATGAGGATGAGTTCGAGAGTGAGGACGAGGTTCTCGAGGCTGGT
GTAGATGGTCGTCCCGATGCTGAACGGGAGGAGGAAGAGAAAGGTAAGAT
CTTGCGCCCATTGCGACGGGTTCTGCCAGTCGCATACTGCGATCCTCGAA
TGTGGCAGTCATACTGACCCCGACTGGTCCCTTCAGATGCCATGGACCTT
GACAAGCAGACTTTTATTCCCGGAAGGACAAAATTGGCACCCGGAGAGGT
CCTCTCTCCCGATCCGTCTACTTACGACATGCTGCACACTCTCAGCACCC
CGTGGCCCTGTCTATCGTTCGATATCGTGCGCGATTCGTTGGGCGACAAC
CGCAAGACTTATCCCACCACTGTCTACGCCGTAACAGGCACACAAGCAGA
GGGCCGACGTGCAAAGGAGAATGAGCTGATGGTGTTGAAGCTAAGTGGTA
TGAGCAAGATGGACAAGGAGGATGGCATGGATTCGGACAGCGACTCCGAT
TCGGACGACGACAGCGAGGCGATCCTGGAACACAAGAGCATTCCTCTCGG
ATCGACGACCAACCGCATCCGCGCCCACCAGACCCCTAACCAGTCCGGAG
ACTATTCCAAGCCCCCGCAGACTCTTACCGCCACTATGCTCGAGAACTCC
CAGGTCGTGATCCACGATGTTACCCCCCATCTCACCAGCTTCGATGTCCC
TGGAACCATCCTCCCTCCCTCCGCCAACAAGCCCCTGTCTACTCTCCGCA
TGCACAAGTCGGAGGGATACGCCCTCGACTGGTCTCCGCTACAGCCCCTC
GGCAAGCTGTTGACTGGTGACAATGACGGTTTGATCTACGTGACGACTCG
CACTGAAGGCGGTGGCTGGGTCACCGACACTCGTCCGTTCACCGGCCACA
TGTCGTCTGTTGAGGAGCTCCAGTGGTCTCCCAACGAGAAGAACGTTTTC
GCCTCTGCCAGCAGTGACGGCAGTGTCAAGGTGTGGGACGTTCGTTCGAA
GTCGCGCAAGCCTGCTGTCGACGTGAAGGTGTCGAACACCGATGTCAACG
TCATGAGCTGGTCGAACCAGACTTTCCACCTCCTTGCGACAGGTGCGGAT
GACGGACAGTGGGCCGTCTGGGATCTGAGACACTGGAAGCCGAATGCCGC
GGCTCCGGGATCTCAGACCACAGCTTCCCCTGTTGCCTCGTTCGACTTCC
ACCGTGAGCCTGTCACGAGTATTGAGTGGCACCCGACCGACGACAGTGTC
GTCGCGGTCGGTTCCGCCGACAACACGGTCACGCTGTGGGATTTGGCTGT
GGAACTGGATGAGGAGGAGAACCGTGAGGCGGGAATGCAGGAAGTTCCGC
CGCAGCTACTGTTCGTGCACTACATGGAGTCCGTCAAGGAAATCCACTGG
CAGGCCCAGATGCCCGGTACGATCATGGCTACGGGCGGTGCTGGATTTGG
GTAAGTCATACTCCACTCTGTTTTTTTCTTTTTATTTTAAGGGACACTAA
AGCTAACAAATCGAAACAGTGTGTTCAAGACAATCAGTGTGTAGACAAAG
TTCAACAAAAGTGCCATTTAAACGAATGCATATAGGTAGTTTGGTGCGTT
TTGATGCGTTATACCACATGATCGGTTATGTTATTGCTTTATGATGAATT
ATATAGATTACAATGATGAAGCATGATGCCCATTTCAGAGATGTTCCCAA
ATATACCCGGTTGCCAATTTTCTAGCCCCAAG back to topCoding sequence (CDS) from alignment at ch2:3636335..3638266+ >KJC3_002808-T1 ID=KJC3_002808-T1|Name=KJC3_002808-T1|organism=Aspergillus niger KJC3|type=CDS|length=4464bp|location=Sequence derived from alignment at ch2:3636335..3638266+ (Aspergillus niger KJC3)
ATGTCGAAGAGATCTGCCGACGTTTCCGACGAGCAGAACGCCGCCCTCAA
GGCCGGTGAGCGTCCCGTCGTCGACGCCCCTCCCGACGAGGTGGGGGAGT
TCGAGGATGAGTATGAGGATGAGTTCGAGAGTGAGGACGAGGTTCTCGAG
GCTGGTGTAGATGGTCGTCCCGATGCTGAACGGGAGGAGGAAGAGAAAGA
TGCCATGGACCTTGACAAGCAGACTTTTATTCCCGGAAGGACAAAATTGG
CACCCGGAGAGGTCCTCTCTCCCGATCCGTCTACTTACGACATGCTGCAC
ACTCTCAGCACCCCGTGGCCCTGTCTATCGTTCGATATCGTGCGCGATTC
GTTGGGCGACAACCGCAAGACTTATCCCACCACTGTCTACGCCGTAACAG
GCACACAAGCAGAGGGCCGACGTGCAAAGGAGAATGAGCTGATGGTGTTG
AAGCTAAGTGGTATGAGCAAGATGGACAAGGAGGATGGCATGGATTCGGA
CAGCGACTCCGATTCGGACGACGACAGCGAGGCGATCCTGGAACACAAGA
GCATTCCTCTCGGATCGACGACCAACCGCATCCGCGCCCACCAGACCCCT
AACCAGTCCGGAGACTATTCCAAGCCCCCGCAGACTCTTACCGCCACTAT
GCTCGAGAACTCCCAGGTCGTGATCCACGATGTTACCCCCCATCTCACCA
GCTTCGATGTCCCTGGAACCATCCTCCCTCCCTCCGCCAACAAGCCCCTG
TCTACTCTCCGCATGCACAAGTCGGAGGGATACGCCCTCGACTGGTCTCC
GCTACAGCCCCTCGGCAAGCTGTTGACTGGTGACAATGACGGTTTGATCT
ACGTGACGACTCGCACTGAAGGCGGTGGCTGGGTCACCGACACTCGTCCG
TTCACCGGCCACATGTCGTCTGTTGAGGAGCTCCAGTGGTCTCCCAACGA
GAAGAACGTTTTCGCCTCTGCCAGCAGTGACGGCAGTGTCAAGGTGTGGG
ACGTTCGTTCGAAGTCGCGCAAGCCTGCTGTCGACGTGAAGGTGTCGAAC
ACCGATGTCAACGTCATGAGCTGGTCGAACCAGACTTTCCACCTCCTTGC
GACAGGTGCGGATGACGGACAGTGGGCCGTCTGGGATCTGAGACACTGGA
AGCCGAATGCCGCGGCTCCGGGATCTCAGACCACAGCTTCCCCTGTTGCC
TCGTTCGACTTCCACCGTGAGCCTGTCACGAGTATTGAGTGGCACCCGAC
CGACGACAGTGTCGTCGCGGTCGGTTCCGCCGACAACACGGTCACGCTGT
GGGATTTGGCTGTGGAACTGGATGAGGAGGAGAACCGTGAGGCGGGAATG
CAGGAAGTTCCGCCGCAGCTACTGTTCGTGCACTACATGGAGTCCGTCAA
GGAAATCCACTGGCAGGCCCAGATGCCCGGTACGATCATGGCTACGGGCG
GTGCTGGATTTGGTGTGTTCAAGACAATCAGTGTGTAGATGTCGAAGAGA
TCTGCCGACGTTTCCGACGAGCAGAACGCCGCCCTCAAGGCCGGTGAGCG
TCCCGTCGTCGACGCCCCTCCCGACGAGGTGGGGGAGTTCGAGGATGAGT
ATGAGGATGAGTTCGAGAGTGAGGACGAGGTTCTCGAGGCTGGTGTAGAT
GGTCGTCCCGATGCTGAACGGGAGGAGGAAGAGAAAGATGCCATGGACCT
TGACAAGCAGACTTTTATTCCCGGAAGGACAAAATTGGCACCCGGAGAGG
TCCTCTCTCCCGATCCGTCTACTTACGACATGCTGCACACTCTCAGCACC
CCGTGGCCCTGTCTATCGTTCGATATCGTGCGCGATTCGTTGGGCGACAA
CCGCAAGACTTATCCCACCACTGTCTACGCCGTAACAGGCACACAAGCAG
AGGGCCGACGTGCAAAGGAGAATGAGCTGATGGTGTTGAAGCTAAGTGGT
ATGAGCAAGATGGACAAGGAGGATGGCATGGATTCGGACAGCGACTCCGA
TTCGGACGACGACAGCGAGGCGATCCTGGAACACAAGAGCATTCCTCTCG
GATCGACGACCAACCGCATCCGCGCCCACCAGACCCCTAACCAGTCCGGA
GACTATTCCAAGCCCCCGCAGACTCTTACCGCCACTATGCTCGAGAACTC
CCAGGTCGTGATCCACGATGTTACCCCCCATCTCACCAGCTTCGATGTCC
CTGGAACCATCCTCCCTCCCTCCGCCAACAAGCCCCTGTCTACTCTCCGC
ATGCACAAGTCGGAGGGATACGCCCTCGACTGGTCTCCGCTACAGCCCCT
CGGCAAGCTGTTGACTGGTGACAATGACGGTTTGATCTACGTGACGACTC
GCACTGAAGGCGGTGGCTGGGTCACCGACACTCGTCCGTTCACCGGCCAC
ATGTCGTCTGTTGAGGAGCTCCAGTGGTCTCCCAACGAGAAGAACGTTTT
CGCCTCTGCCAGCAGTGACGGCAGTGTCAAGGTGTGGGACGTTCGTTCGA
AGTCGCGCAAGCCTGCTGTCGACGTGAAGGTGTCGAACACCGATGTCAAC
GTCATGAGCTGGTCGAACCAGACTTTCCACCTCCTTGCGACAGGTGCGGA
TGACGGACAGTGGGCCGTCTGGGATCTGAGACACTGGAAGCCGAATGCCG
CGGCTCCGGGATCTCAGACCACAGCTTCCCCTGTTGCCTCGTTCGACTTC
CACCGTGAGCCTGTCACGAGTATTGAGTGGCACCCGACCGACGACAGTGT
CGTCGCGGTCGGTTCCGCCGACAACACGGTCACGCTGTGGGATTTGGCTG
TGGAACTGGATGAGGAGGAGAACCGTGAGGCGGGAATGCAGGAAGTTCCG
CCGCAGCTACTGTTCGTGCACTACATGGAGTCCGTCAAGGAAATCCACTG
GCAGGCCCAGATGCCCGGTACGATCATGGCTACGGGCGGTGCTGGATTTG
GTGTGTTCAAGACAATCAGTGTGTAGATGTCGAAGAGATCTGCCGACGTT
TCCGACGAGCAGAACGCCGCCCTCAAGGCCGGTGAGCGTCCCGTCGTCGA
CGCCCCTCCCGACGAGGTGGGGGAGTTCGAGGATGAGTATGAGGATGAGT
TCGAGAGTGAGGACGAGGTTCTCGAGGCTGGTGTAGATGGTCGTCCCGAT
GCTGAACGGGAGGAGGAAGAGAAAGATGCCATGGACCTTGACAAGCAGAC
TTTTATTCCCGGAAGGACAAAATTGGCACCCGGAGAGGTCCTCTCTCCCG
ATCCGTCTACTTACGACATGCTGCACACTCTCAGCACCCCGTGGCCCTGT
CTATCGTTCGATATCGTGCGCGATTCGTTGGGCGACAACCGCAAGACTTA
TCCCACCACTGTCTACGCCGTAACAGGCACACAAGCAGAGGGCCGACGTG
CAAAGGAGAATGAGCTGATGGTGTTGAAGCTAAGTGGTATGAGCAAGATG
GACAAGGAGGATGGCATGGATTCGGACAGCGACTCCGATTCGGACGACGA
CAGCGAGGCGATCCTGGAACACAAGAGCATTCCTCTCGGATCGACGACCA
ACCGCATCCGCGCCCACCAGACCCCTAACCAGTCCGGAGACTATTCCAAG
CCCCCGCAGACTCTTACCGCCACTATGCTCGAGAACTCCCAGGTCGTGAT
CCACGATGTTACCCCCCATCTCACCAGCTTCGATGTCCCTGGAACCATCC
TCCCTCCCTCCGCCAACAAGCCCCTGTCTACTCTCCGCATGCACAAGTCG
GAGGGATACGCCCTCGACTGGTCTCCGCTACAGCCCCTCGGCAAGCTGTT
GACTGGTGACAATGACGGTTTGATCTACGTGACGACTCGCACTGAAGGCG
GTGGCTGGGTCACCGACACTCGTCCGTTCACCGGCCACATGTCGTCTGTT
GAGGAGCTCCAGTGGTCTCCCAACGAGAAGAACGTTTTCGCCTCTGCCAG
CAGTGACGGCAGTGTCAAGGTGTGGGACGTTCGTTCGAAGTCGCGCAAGC
CTGCTGTCGACGTGAAGGTGTCGAACACCGATGTCAACGTCATGAGCTGG
TCGAACCAGACTTTCCACCTCCTTGCGACAGGTGCGGATGACGGACAGTG
GGCCGTCTGGGATCTGAGACACTGGAAGCCGAATGCCGCGGCTCCGGGAT
CTCAGACCACAGCTTCCCCTGTTGCCTCGTTCGACTTCCACCGTGAGCCT
GTCACGAGTATTGAGTGGCACCCGACCGACGACAGTGTCGTCGCGGTCGG
TTCCGCCGACAACACGGTCACGCTGTGGGATTTGGCTGTGGAACTGGATG
AGGAGGAGAACCGTGAGGCGGGAATGCAGGAAGTTCCGCCGCAGCTACTG
TTCGTGCACTACATGGAGTCCGTCAAGGAAATCCACTGGCAGGCCCAGAT
GCCCGGTACGATCATGGCTACGGGCGGTGCTGGATTTGGTGTGTTCAAGA
CAATCAGTGTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002808-T1.utr5p1 | KJC3_002808-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002808-T1.utr3p1 | KJC3_002808-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262DC1 |
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR019775 |
| DBxref | InterPro:IPR022052 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | InterPro:IPR020472 |
| DBxref | PFAM:PF00400 |
| DBxref | PFAM:PF12265 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3636335..3638266 + |
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