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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:137196..139059+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002989-T1 ID=KJC3_002989-T1|Name=KJC3_002989-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1864bp|location=Sequence derived from alignment at ch3:137196..139059+ (Aspergillus niger KJC3)
CAAAAAGCACGGTCATGTCATCAGCCTCCATTGCCATTAGGTCCCAATAT
CACTGGATCCTTTGTTGTTATCGCGCCACACGGCGAACGAATCACAACGG
TCTAGTTCCTACATGTGAGTCCGGCGAGTCCGGGACTTCACTCTTGGCCG
GATTCCCCCCCAGGTTTATATCATTTCCTGCGCGCCGTCTATCTAGGTCA
GGCAGAGGCCGGAACTCAGCTTGCGTCTTTAGCTAGACTATACTCCGTCT
TCTCGACTAACCCTCGCCAGCTCGGACTGGCTGCCGCATGGATGCCTCGC
CCTAATCTTACGCGCCCCCGGCGGCCTTGGTGCATCGCCATTTCCATTGC
CATTGCCCTAGTGATCATTATTGTCATTGTTGTCCCCTGTGCAGTCATAT
TGACTCGCAAGCATGGTGGTGAAAAGACGAACGTTCTGTTCCCACTATAC
ATCTACCCCACCAATGACAGTACATGGGATCCTTTATATGAATCGTATGT
TGAACCTGAAACACACATACCCCCCGATTACATTGCGCACGGTGACTGAC
AGTCCCAGGGTCACGGCGCACCCGGACCTGAACTTCACGGTCATCATCAA
TCCGTCGAGCGGACCCGGCTCCAGTGCGTATCCCTCGGAGGAGTATACCT
CCTCAGTGGAACGACTTAGCACATATTCCAATGTACGCAAGGTTGGATAT
GTACGCACGGCTTATGCCACGCGCAACATCACCGATGTGCTGGATGATGT
CGCCACTTATGCCGGGTGGGCGAATCGATCGCTGACACTAGCGATGGATG
GGATTTTCTTTGACGAAGCTCCCTATGACTACTCGGCAGCAAAGGTTGAG
TACATGCAGACGATCAGCGAGGCCGTCAAGAGTTCTTCGGGAATGGGCCG
AGATCGCATGGTAAGCGAGACCGCGGTTCGGGTGCAGCAAGAGCGCAGAA
AATTCTTTTGCTATGACGATCCCAGTGGCTAACTTTTTTTTTGGCGGATC
TGCCCTTTAGGTGATCCACAATCCCGGTACCATTCCGGATAGTCGCTACG
AGAACAACGCGACGGACGTCACAGTGGTGTTTGAGAGCTCCTACCAGGAT
TTTCACTCGGAAAAGCACAGTCTGAACGCCATGGCTTCGAATCGCACGGC
ATATGCGTATATGCTGCACTCGGTACCTGACAATCTCAGCAACAGCACGT
TGCGCAGTTTTGTCAACCAGATGAGCCGAAAGGCCGAGTATCTGTTCCTG
ACCACGTTGACGGAAGACTACTACGAGAGTTTCGATCCGGAGGGTGAGAC
CATCTGCGACGTGATGCCGACCTGAAGAACGACGATAAGTGGCCGGTTGA
TCCCCGTGTGTGTGGCTCCCGCCGCACCCAAACTTCGATAACTCTGGGAC
GGTCGCTCTCGATGGAAGTTCGAACAACTCTAGTGAATATTTCCCCTTTG
ACTAGTATCTGGCGCTAAAGAGGATGCTCCACTTGGACCAAGATCCATGC
GTTGTGAGTTGGCCCGGTCAAGGTTCCCCGATCGGGGCTGTGATTGGTGT
GAGATACACCAACTGCAGCCGGCAGGGGAAGGTTTGCAAGAGAAAAGCTT
GGAGACGCCCGGCCAGACCTTTGGTCCATGGTTTAGCGCGGGAGTGGCGT
TATGGTACTTTTTCTTCGTTGCTTTTTTCCTTGCTTTTCGGCTTTCTTGG
ACAGGCACACAGACAGGACAAGACGACTAGTCCTATATCACCGGGCTGCT
ATGGTACAGTCATCTCCCATTCACAATGTCTGCCTTGGCCCGTGGTGTCC
ACGTCGCGCCTCTTGACTAGTTAGCGACTTCACATAGATGAATTCATGCC
ATGATTTCTCGTAT back to topCoding sequence (CDS) from alignment at ch3:137196..139059+ >KJC3_002989-T1 ID=KJC3_002989-T1|Name=KJC3_002989-T1|organism=Aspergillus niger KJC3|type=CDS|length=1626bp|location=Sequence derived from alignment at ch3:137196..139059+ (Aspergillus niger KJC3)
ATGGTGGTGAAAAGACGAACGTTCTGTTCCCACTATACATCTACCCCACC
AATGACAGTACATGGGATCCTTTATATGAATCGTATGTTGAACCTGAAAC
ACACATACCCCCCGATTACATTGCGCACGGTGACTGACAGTCCCAGGGTC
ACGGCGCACCCGGACCTGAACTTCACGGTCATCATCAATCCGTCGAGCGG
ACCCGGCTCCAGTGCGTATCCCTCGGAGGAGTATACCTCCTCAGTGGAAC
GACTTAGCACATATTCCAATGTACGCAAGGTTGGATATGTACGCACGGCT
TATGCCACGCGCAACATCACCGATGTGCTGGATGATGTCGCCACTTATGC
CGGGTGGGCGAATCGATCGCTGACACTAGCGATGGATGGGATTTTCTTTG
ACGAAGCTCCCTATGACTACTCGGCAGCAAAGGTTGAGTACATGCAGACG
ATCAGCGAGGCCGTCAAGAGTTCTTCGGGAATGGGCCGAGATCGCATGGT
GATCCACAATCCCGGTACCATTCCGGATAGTCGCTACGAGAACAACGCGA
CGGACGTCACAGTGGTGTTTGAGAGCTCCTACCAGGATTTTCACTCGGAA
AAGCACAGTCTGAACGCCATGGCTTCGAATCGCACGGCATATGCGTATAT
GCTGCACTCGGTACCTGACAATCTCAGCAACAGCACGTTGCGCAGTTTTG
TCAACCAGATGAGCCGAAAGGCCGAGTATCTGTTCCTGACCACGTTGACG
GAAGACTACTACGAGAGTTTCGATCCGGAGGGTGAGACCATCTGCGACGT
GATGCCGACCTGAATGGTGGTGAAAAGACGAACGTTCTGTTCCCACTATA
CATCTACCCCACCAATGACAGTACATGGGATCCTTTATATGAATCGTATG
TTGAACCTGAAACACACATACCCCCCGATTACATTGCGCACGGTGACTGA
CAGTCCCAGGGTCACGGCGCACCCGGACCTGAACTTCACGGTCATCATCA
ATCCGTCGAGCGGACCCGGCTCCAGTGCGTATCCCTCGGAGGAGTATACC
TCCTCAGTGGAACGACTTAGCACATATTCCAATGTACGCAAGGTTGGATA
TGTACGCACGGCTTATGCCACGCGCAACATCACCGATGTGCTGGATGATG
TCGCCACTTATGCCGGGTGGGCGAATCGATCGCTGACACTAGCGATGGAT
GGGATTTTCTTTGACGAAGCTCCCTATGACTACTCGGCAGCAAAGGTTGA
GTACATGCAGACGATCAGCGAGGCCGTCAAGAGTTCTTCGGGAATGGGCC
GAGATCGCATGGTGATCCACAATCCCGGTACCATTCCGGATAGTCGCTAC
GAGAACAACGCGACGGACGTCACAGTGGTGTTTGAGAGCTCCTACCAGGA
TTTTCACTCGGAAAAGCACAGTCTGAACGCCATGGCTTCGAATCGCACGG
CATATGCGTATATGCTGCACTCGGTACCTGACAATCTCAGCAACAGCACG
TTGCGCAGTTTTGTCAACCAGATGAGCCGAAAGGCCGAGTATCTGTTCCT
GACCACGTTGACGGAAGACTACTACGAGAGTTTCGATCCGGAGGGTGAGA
CCATCTGCGACGTGATGCCGACCTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002989-T1.utr5p1 | KJC3_002989-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002989-T1.utr3p1 | KJC3_002989-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | CAZy:GH135 |
| DBxref | InterPro:IPR021986 |
| DBxref | PFAM:PF12138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:137196..139059 + |
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