You are here

Home

KJC3_003130-T1, KJC3_003130-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003130-T1
Unique NameKJC3_003130-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:934941..936166+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003130-T1 ID=KJC3_003130-T1|Name=KJC3_003130-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1226bp|location=Sequence derived from alignment at ch3:934941..936166+ (Aspergillus niger KJC3)
CTTACACACTCACACCCTCAATTCTATTCAACCCTCTTTCTCTGAGTTAT
TATCCTTCCTCCCACATCTACAATGGTCATCAGAGGCACTCAATTAGATG
GCGTCGCTCTGGTCGTCGGCGTAAGAACCTTCCCTCTCCCCCACCACCTC
AAACAGATGGTTTCCTCCTCCCAAACTAACCTCCCATAAATCCAGTCTGG
TCGCGGCATCGGCCAACAAACCGCTTTCTCCCTAGCCGAAGCAGGCGCCC
GCGTCATCGTCTTCGCCGACATGAACACCGAAACAGCCACTGCCTCCGCC
GAAGAGAGCAAGCAATACGCCACAAACCCCGAATACCAATCCACCCACTT
CACCGTTAACGTGACCGATCAAGATGGCGTGCAAGCCATGGTTGACTTTG
TCGTCGAGAAGTTCGGACGGCTGGACTATGCCGTCAACGCTGCAGGAGTG
AGTCCCATCCACCATCATTATCCGTTAAGAATATTCCACAACAACCTAGC
GCATGGTTCTCTTCCCACCAAGCTAACTCAAAAAAATCCAACTAGGTCGA
CAACGGCGTACACACCCCCTTCGCCGACACCGACATTGACAACTTCGACC
GCGTCCAGACCATCAACGCCCGTGGTATGTTCCTCTGCTGCCGCGCCGAA
GCCGCCGCCATGCGCAAGCAGACCTCACGCACCTTCACTAGCCGCACCGG
CACCCGGGACATTGGTCGCGGCGCCATCGTGAACGTCTGCTCAGCCAACT
CCTTCGCCGGACTGCCCGGGAAGGCATCATATACCGTCTCCAAGCATGCC
TGCATGGCGGTGATGAAGATGGTTGGTATGTTTATCCCCTCCCCCAATAC
CTTATACACGATACTATCCTATTCAATCCAACTCCCGTTATAAACATATA
TAAATATTATCTGGTACAGGACTGGACCACTCCGCCGAAGGCATCCGCTG
CAACGCTGTATGTCCCATCTGGGTCCGCACCCCTCTTCTCGATGTCGAGT
TGGAGCGGAACCCGCAGGTGCGCGCGGAAATCGAGGCCGTTATACCCATT
AAGCGTGCGGCGGAGAGTGATGAGGTGGGAGATACGATTGTTTATTTGCT
TAGTCCGTCGGCGAGTTATGTTAATGCTACGAGTTTGTTGTTGGATGCGG
CGGTTACGGCGACGTTGAGGTTTCATTGATTAGTATTCATATTTTATGTC
TGGTTGGTAGTTAATAGAAGTGAGAG
back to top

Coding sequence (CDS) from alignment at ch3:934941..936166+

>KJC3_003130-T1 ID=KJC3_003130-T1|Name=KJC3_003130-T1|organism=Aspergillus niger KJC3|type=CDS|length=3360bp|location=Sequence derived from alignment at ch3:934941..936166+ (Aspergillus niger KJC3)
ATGGTCATCAGAGGCACTCAATTAGATGGCGTCGCTCTGGTCGTCGGCTC
TGGTCGCGGCATCGGCCAACAAACCGCTTTCTCCCTAGCCGAAGCAGGCG
CCCGCGTCATCGTCTTCGCCGACATGAACACCGAAACAGCCACTGCCTCC
GCCGAAGAGAGCAAGCAATACGCCACAAACCCCGAATACCAATCCACCCA
CTTCACCGTTAACGTGACCGATCAAGATGGCGTGCAAGCCATGGTTGACT
TTGTCGTCGAGAAGTTCGGACGGCTGGACTATGCCGTCAACGCTGCAGGA
GTCGACAACGGCGTACACACCCCCTTCGCCGACACCGACATTGACAACTT
CGACCGCGTCCAGACCATCAACGCCCGTGGTATGTTCCTCTGCTGCCGCG
CCGAAGCCGCCGCCATGCGCAAGCAGACCTCACGCACCTTCACTAGCCGC
ACCGGCACCCGGGACATTGGTCGCGGCGCCATCGTGAACGTCTGCTCAGC
CAACTCCTTCGCCGGACTGCCCGGGAAGGCATCATATACCGTCTCCAAGC
ATGCCTGCATGGCGGTGATGAAGATGGTTGGACTGGACCACTCCGCCGAA
GGCATCCGCTGCAACGCTGTATGTCCCATCTGGGTCCGCACCCCTCTTCT
CGATGTCGAGTTGGAGCGGAACCCGCAGGTGCGCGCGGAAATCGAGGCCG
TTATACCCATTAAGCGTGCGGCGGAGAGTGATGAGGTGGGAGATACGATT
GTTTATTTGCTTAGTCCGTCGGCGAGTTATGTTAATGCTACGAGTTTGTT
GTTGGATGCGGCGGTTACGGCGACGTTGAGGTTTCATTGAATGGTCATCA
GAGGCACTCAATTAGATGGCGTCGCTCTGGTCGTCGGCTCTGGTCGCGGC
ATCGGCCAACAAACCGCTTTCTCCCTAGCCGAAGCAGGCGCCCGCGTCAT
CGTCTTCGCCGACATGAACACCGAAACAGCCACTGCCTCCGCCGAAGAGA
GCAAGCAATACGCCACAAACCCCGAATACCAATCCACCCACTTCACCGTT
AACGTGACCGATCAAGATGGCGTGCAAGCCATGGTTGACTTTGTCGTCGA
GAAGTTCGGACGGCTGGACTATGCCGTCAACGCTGCAGGAGTCGACAACG
GCGTACACACCCCCTTCGCCGACACCGACATTGACAACTTCGACCGCGTC
CAGACCATCAACGCCCGTGGTATGTTCCTCTGCTGCCGCGCCGAAGCCGC
CGCCATGCGCAAGCAGACCTCACGCACCTTCACTAGCCGCACCGGCACCC
GGGACATTGGTCGCGGCGCCATCGTGAACGTCTGCTCAGCCAACTCCTTC
GCCGGACTGCCCGGGAAGGCATCATATACCGTCTCCAAGCATGCCTGCAT
GGCGGTGATGAAGATGGTTGGACTGGACCACTCCGCCGAAGGCATCCGCT
GCAACGCTGTATGTCCCATCTGGGTCCGCACCCCTCTTCTCGATGTCGAG
TTGGAGCGGAACCCGCAGGTGCGCGCGGAAATCGAGGCCGTTATACCCAT
TAAGCGTGCGGCGGAGAGTGATGAGGTGGGAGATACGATTGTTTATTTGC
TTAGTCCGTCGGCGAGTTATGTTAATGCTACGAGTTTGTTGTTGGATGCG
GCGGTTACGGCGACGTTGAGGTTTCATTGAATGGTCATCAGAGGCACTCA
ATTAGATGGCGTCGCTCTGGTCGTCGGCTCTGGTCGCGGCATCGGCCAAC
AAACCGCTTTCTCCCTAGCCGAAGCAGGCGCCCGCGTCATCGTCTTCGCC
GACATGAACACCGAAACAGCCACTGCCTCCGCCGAAGAGAGCAAGCAATA
CGCCACAAACCCCGAATACCAATCCACCCACTTCACCGTTAACGTGACCG
ATCAAGATGGCGTGCAAGCCATGGTTGACTTTGTCGTCGAGAAGTTCGGA
CGGCTGGACTATGCCGTCAACGCTGCAGGAGTCGACAACGGCGTACACAC
CCCCTTCGCCGACACCGACATTGACAACTTCGACCGCGTCCAGACCATCA
ACGCCCGTGGTATGTTCCTCTGCTGCCGCGCCGAAGCCGCCGCCATGCGC
AAGCAGACCTCACGCACCTTCACTAGCCGCACCGGCACCCGGGACATTGG
TCGCGGCGCCATCGTGAACGTCTGCTCAGCCAACTCCTTCGCCGGACTGC
CCGGGAAGGCATCATATACCGTCTCCAAGCATGCCTGCATGGCGGTGATG
AAGATGGTTGGACTGGACCACTCCGCCGAAGGCATCCGCTGCAACGCTGT
ATGTCCCATCTGGGTCCGCACCCCTCTTCTCGATGTCGAGTTGGAGCGGA
ACCCGCAGGTGCGCGCGGAAATCGAGGCCGTTATACCCATTAAGCGTGCG
GCGGAGAGTGATGAGGTGGGAGATACGATTGTTTATTTGCTTAGTCCGTC
GGCGAGTTATGTTAATGCTACGAGTTTGTTGTTGGATGCGGCGGTTACGG
CGACGTTGAGGTTTCATTGAATGGTCATCAGAGGCACTCAATTAGATGGC
GTCGCTCTGGTCGTCGGCTCTGGTCGCGGCATCGGCCAACAAACCGCTTT
CTCCCTAGCCGAAGCAGGCGCCCGCGTCATCGTCTTCGCCGACATGAACA
CCGAAACAGCCACTGCCTCCGCCGAAGAGAGCAAGCAATACGCCACAAAC
CCCGAATACCAATCCACCCACTTCACCGTTAACGTGACCGATCAAGATGG
CGTGCAAGCCATGGTTGACTTTGTCGTCGAGAAGTTCGGACGGCTGGACT
ATGCCGTCAACGCTGCAGGAGTCGACAACGGCGTACACACCCCCTTCGCC
GACACCGACATTGACAACTTCGACCGCGTCCAGACCATCAACGCCCGTGG
TATGTTCCTCTGCTGCCGCGCCGAAGCCGCCGCCATGCGCAAGCAGACCT
CACGCACCTTCACTAGCCGCACCGGCACCCGGGACATTGGTCGCGGCGCC
ATCGTGAACGTCTGCTCAGCCAACTCCTTCGCCGGACTGCCCGGGAAGGC
ATCATATACCGTCTCCAAGCATGCCTGCATGGCGGTGATGAAGATGGTTG
GACTGGACCACTCCGCCGAAGGCATCCGCTGCAACGCTGTATGTCCCATC
TGGGTCCGCACCCCTCTTCTCGATGTCGAGTTGGAGCGGAACCCGCAGGT
GCGCGCGGAAATCGAGGCCGTTATACCCATTAAGCGTGCGGCGGAGAGTG
ATGAGGTGGGAGATACGATTGTTTATTTGCTTAGTCCGTCGGCGAGTTAT
GTTAATGCTACGAGTTTGTTGTTGGATGCGGCGGTTACGGCGACGTTGAG
GTTTCATTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003130KJC3_003130Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003130-T1KJC3_003130-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003130-T1.utr5p1KJC3_003130-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003130-T1.exon1KJC3_003130-T1.exon1Aspergillus niger KJC3exon
KJC3_003130-T1.exon2KJC3_003130-T1.exon2Aspergillus niger KJC3exon
KJC3_003130-T1.exon3KJC3_003130-T1.exon3Aspergillus niger KJC3exon
KJC3_003130-T1.exon4KJC3_003130-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003130-T1.cdsKJC3_003130-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003130-T1.utr3p1KJC3_003130-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF08659
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:934941..936166 +
Powered by Drupal