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KJC3_003196-T1, KJC3_003196-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003196-T1
Unique NameKJC3_003196-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1204776..1206071-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003196-T1 ID=KJC3_003196-T1|Name=KJC3_003196-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1296bp|location=Sequence derived from alignment at ch3:1204776..1206071- (Aspergillus niger KJC3)
TTTTTTTCTTTTGCCTAAGCGAGGGATTTAATACAATATAAGTTATGTTT
TGTTATTTCGATGTATCTGTCCAACTCCGATCATCCCGGACATTCGGGTC
CACAAGTCCGACCGCCCGACAAAAATATATAAAGGACAGTGATGGTGAAT
ATTATCACATAGCGGGGGTACAAATAAGTGACTCTGGCAATTCATTACAG
TTCAATGAAAGATATTATCCTGAAGTCCTGTCAAAATAACACAATACAAT
GTCGGTCAGTCTTCGCCACTCACCCCCAGCACTGGACAATCGGCCATTGA
CCGTTCTATCAAAACTTTAGCTTCCGTCCGGGTATGCTACCAACTCCTTT
GTCGCCTCGAATAAACCTCGATCCTAATGTGGATGATACTATCATTAGTG
TTAATATCACGAATGAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGA
AGGGGGGCAGATAAACCTGCATTCGTTATCTACAAGATATCCGACGACGA
ACGCTCTATCGTCGTGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCAT
TCCTCCAAAAGCTTACATCCGCACATGATAGTGACAGGAAACCTGCACCT
CGATATGCAATATATGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAG
GTAATTGAGAGGATCTCCGGAAGTAGATAGAGCAATATGGGTATGTCGTG
CTAACCTTCGTCAGAGCGACAATTGTCTTTATCAGCTGGATGCCCGATGT
GACGTCTACCCGGGTAGGTCATCGCGCTTCTAAAGCTTTAACGTTTATCT
GAGTCCCCACTGACACGACGGTTAGATCCGTATGCTCTATGCTTCTACCA
AGGAGCAGCTCCGAAAGGCTCTCGATGTCAAAGTATCCATCCATGCTGAT
AATTTGCATGATATTGAATGGAAGACGGTGTTAAAAGAAGCCAGTGGTGG
GCGACTCTAAGTTCTATCCCAACTCTTATTATTCTAATTCAGCAAAGACT
GTTCAGCACAATCTTGCTTCAATCATTGGTGCCTATATAGAAAAGAAGGA
CACACTACAACCCCTTTGGCCACATACGAGAATGTGGTATCCGGGTAACC
AAAAATACTCGAAACGATGGTTGGTGATGGTGGGATTTAAGGCGAACCAA
TAGCTGCTACGATAATGCGCGGAAATACTGAGGTAATAGGTGGAGAACAA
TAGCGGAGCGTGCTCTAGTCTCTACAGTTGGGACTATTTAATCTGTGACA
CGATGTATAAGTGAAGAGCCAATATCACCGGTCATGATATTACAAG
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Coding sequence (CDS) from alignment at ch3:1204776..1206071-

>KJC3_003196-T1 ID=KJC3_003196-T1|Name=KJC3_003196-T1|organism=Aspergillus niger KJC3|type=CDS|length=2265bp|location=Sequence derived from alignment at ch3:1204776..1206071- (Aspergillus niger KJC3)
ATCCGTATGCTCTATGCTTCTACCAAGGAGCAGCTCCGAAAGGCTCTCGA
TGTCAAAGTATCCATCCATGCTGATAATTTGCATGATATTGAATGGAAGA
CGGTGTTAAAAGAAGCCAGTGGTGGGCGACTCTAAAGCGACAATTGTCTT
TATCAGCTGGATGCCCGATGTGACGTCTACCCGGTGTTAATATCACGAAT
GAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGAAGGGGGGCAGATAA
ACCTGCATTCGTTATCTACAAGATATCCGACGACGAACGCTCTATCGTCG
TGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCATTCCTCCAAAAGCTT
ACATCCGCACATGATAGTGACAGGAAACCTGCACCTCGATATGCAATATA
TGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAGCTTCCGTCCGGATG
TCGATCCGTATGCTCTATGCTTCTACCAAGGAGCAGCTCCGAAAGGCTCT
CGATGTCAAAGTATCCATCCATGCTGATAATTTGCATGATATTGAATGGA
AGACGGTGTTAAAAGAAGCCAGTGGTGGGCGACTCTAAAGCGACAATTGT
CTTTATCAGCTGGATGCCCGATGTGACGTCTACCCGGTGTTAATATCACG
AATGAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGAAGGGGGGCAGA
TAAACCTGCATTCGTTATCTACAAGATATCCGACGACGAACGCTCTATCG
TCGTGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCATTCCTCCAAAAG
CTTACATCCGCACATGATAGTGACAGGAAACCTGCACCTCGATATGCAAT
ATATGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAGCTTCCGTCCGG
ATGTCGATCCGTATGCTCTATGCTTCTACCAAGGAGCAGCTCCGAAAGGC
TCTCGATGTCAAAGTATCCATCCATGCTGATAATTTGCATGATATTGAAT
GGAAGACGGTGTTAAAAGAAGCCAGTGGTGGGCGACTCTAAAGCGACAAT
TGTCTTTATCAGCTGGATGCCCGATGTGACGTCTACCCGGTGTTAATATC
ACGAATGAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGAAGGGGGGC
AGATAAACCTGCATTCGTTATCTACAAGATATCCGACGACGAACGCTCTA
TCGTCGTGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCATTCCTCCAA
AAGCTTACATCCGCACATGATAGTGACAGGAAACCTGCACCTCGATATGC
AATATATGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAGCTTCCGTC
CGGATGTCGATCCGTATGCTCTATGCTTCTACCAAGGAGCAGCTCCGAAA
GGCTCTCGATGTCAAAGTATCCATCCATGCTGATAATTTGCATGATATTG
AATGGAAGACGGTGTTAAAAGAAGCCAGTGGTGGGCGACTCTAAAGCGAC
AATTGTCTTTATCAGCTGGATGCCCGATGTGACGTCTACCCGGTGTTAAT
ATCACGAATGAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGAAGGGG
GGCAGATAAACCTGCATTCGTTATCTACAAGATATCCGACGACGAACGCT
CTATCGTCGTGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCATTCCTC
CAAAAGCTTACATCCGCACATGATAGTGACAGGAAACCTGCACCTCGATA
TGCAATATATGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAGCTTCC
GTCCGGATGTCGATCCGTATGCTCTATGCTTCTACCAAGGAGCAGCTCCG
AAAGGCTCTCGATGTCAAAGTATCCATCCATGCTGATAATTTGCATGATA
TTGAATGGAAGACGGTGTTAAAAGAAGCCAGTGGTGGGCGACTCTAAAGC
GACAATTGTCTTTATCAGCTGGATGCCCGATGTGACGTCTACCCGGTGTT
AATATCACGAATGAGTGCATCGCTGCTTATAAAGAGCTTCTATACAGAAG
GGGGGCAGATAAACCTGCATTCGTTATCTACAAGATATCCGACGACGAAC
GCTCTATCGTCGTGGAAGAAAGCTCCCCGGAGAAGAACTACGAGGCATTC
CTCCAAAAGCTTACATCCGCACATGATAGTGACAGGAAACCTGCACCTCG
ATATGCAATATATGACGTGGAGTATGACTTGCTTGAAGACGGTAGGAGCT
TCCGTCCGGATGTCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030042actin filament depolymerization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003196KJC3_003196Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003196-T1KJC3_003196-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003196-T1.cdsKJC3_003196-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003196-T1.utr3p1KJC3_003196-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003196-T1.exon5KJC3_003196-T1.exon5Aspergillus niger KJC3exon
KJC3_003196-T1.exon4KJC3_003196-T1.exon4Aspergillus niger KJC3exon
KJC3_003196-T1.exon3KJC3_003196-T1.exon3Aspergillus niger KJC3exon
KJC3_003196-T1.exon2KJC3_003196-T1.exon2Aspergillus niger KJC3exon
KJC3_003196-T1.exon1KJC3_003196-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003196-T1.utr5p1KJC3_003196-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR017904
DBxrefInterPro:IPR029006
DBxrefInterPro:IPR002108
DBxrefPFAM:PF00241
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1204776..1206071 -
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