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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1567424..1569427- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003300-T1 ID=KJC3_003300-T1|Name=KJC3_003300-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2004bp|location=Sequence derived from alignment at ch3:1567424..1569427- (Aspergillus niger KJC3)
ACCGTCAGCTGAAGCATTGGCCTGCCACTAACGTAAGACTCAAAACTCTC
AGCCTTCTCCATCTACTCCATTCCTCATCTGTCTTTACACTTCTTCAGTC
GTCGTCCTGTCCGGCCCAGGCTATGCATCCTTCTCGGCTATTTACAGGAC
CATTTCTTGTCCTACCCCCCTACATGCAACATGTGAGATGTCACGATTCA
CGGAGTTTCCATTCAACGAAATGATCTCCGGCACCGAGGGCGGCGCCCGT
GCCCCCTTCGAGACCGGTCTTCCTATCTTCTCCCCACTGCGACTTTAGTG
GTTCTGCGCATCTGCAGTCTACGTGGACTTGATCGCACTTACTGCTATTC
ATATTCAATGGCATCTATTGTCAATTTCATCTCGAATGTGCTCCTCCGCC
CTGTGGAGTCCTACTGCAGCTTCGGTCCGACGGTGAGTGAAATCACCTTT
GGACAGCTGGGGTACTCCTTCAATCCCGAACGCGACATCAATGATCTGTC
AGGGAAGGTTGTCTTCGTCACTGGAGGTATGTCATCTCTATACCTTGGGC
TGTCTATCTCAGTGCGCTAACTTCTCCGCTTGTTTCGTAGGAAATGCCGG
TCTAGGAAAAGAAACCATCCTCCAACTCGCCCATCACCGCCCATCTCGCA
TCTACCTTGGTGCACGGAATGCGATCAAAGCCGAAGATGCCATCGCTTCA
ATCCGGGAGCAGGTTCCATCCGCCGATATCAGACACATATCCCTCGACCT
GTCCTCATTCAAGTCGATCCGTGCCGCTGCCGAGCAGTTCACGTCAGAAT
GCGATCGCCTGGACCTCTTGATCCTTAACGCGGGAATCATGAACTGCCCG
CCTGCCCTGACAGAGGAAGGATTCGAGATACAATTCGGGACGAATCATAT
CGGGCATTTCCTACTTACCCAGCTACTACTACCCACACTGCAACGAACGG
TTGATCTTTCCAGGGATGTTCGTGTAGTAACGTTGTCCTCTGCCGCGAAT
GTCGCCGCGCCTCCCTTCGAAGTCATGACTTCTACGCCGGCTTTACTAGC
GGATCACACATTGGCCCGATACTGTTCATCAAAGGCAGCGAATATCCTTT
TTGCGTCGGAGCTGGCTCGTCGCCATCCGGAGATTCTGTCTGTCGCGGTA
CATCCCGGCTCCGTCGTGAGCGACCTATGGGATCATTCGATCAAGACGAG
TGTCGTCGCCAAATACAGTATCGGCGCTCTTCTGGCGTTCAGTCGGGGCA
TACGGAGCGGAGCACTCAACCAACTCTGGGCCGCAGGGGCGAGAAGAGAA
TTGCTGACCAACGGAGCTTATTATGTTCCCATTGGGGTACACGCTACGGG
CAACCGGTACGCAAGGGACGCCGATATGGCACGGCGACTGTGGGAGTGGA
CTGAGCAGCAGATTGCGGACAAATCGTAACCTTATCCGGTTCCAATGATG
TTTTGGTCTTCCCCCACCTCAGCCCCTGTATCTAGAGATCGACGAATTAG
CCCAGGATATGCGTGGCTATGTCTTGGAAACAACACTGTGACTGTCATAA
TAAAGCAAATAATCGAAACCTATGGAATAACATGATGCGATACTGGACGT
TGCTTCAGGGTCCGGATCGCGGGGTTGATGACGGGTAAACTCGCAGATTA
CCGGATTCGGTATGAGATGCCGGAAAGCGGGTGGTGAGCGTCAATCCCGG
CGAGACTCATTGGCGGCCACAAACTGTCCCAAGGTGCCAAACAACCTCTC
AAGAAAAAGGGACCAACCTACTCCCCATAGAAAAAAATATTCCTAGTTCA
ACGTCCCAGCCACTTTCACTATCCCTCTATGACATTTTGAAAGTTGCCGA
TCTCCCTCCATGGACGCCAGTCTAGAAAGTCAGCAGCGGCAGCGATCGTT
AGGGTTTAGCCGAGGAGCCTCCCTGTCCAGATTCCTCGTTTCGCCCACAA
CCAACTTCACCCAGCAGGTCCACGAAGCGCCTTTCCAATGAAAATTGTAA
TCCC back to topCoding sequence (CDS) from alignment at ch3:1567424..1569427- >KJC3_003300-T1 ID=KJC3_003300-T1|Name=KJC3_003300-T1|organism=Aspergillus niger KJC3|type=CDS|length=2016bp|location=Sequence derived from alignment at ch3:1567424..1569427- (Aspergillus niger KJC3)
GAAATGCCGGTCTAGGAAAAGAAACCATCCTCCAACTCGCCCATCACCGC
CCATCTCGCATCTACCTTGGTGCACGGAATGCGATCAAAGCCGAAGATGC
CATCGCTTCAATCCGGGAGCAGGTTCCATCCGCCGATATCAGACACATAT
CCCTCGACCTGTCCTCATTCAAGTCGATCCGTGCCGCTGCCGAGCAGTTC
ACGTCAGAATGCGATCGCCTGGACCTCTTGATCCTTAACGCGGGAATCAT
GAACTGCCCGCCTGCCCTGACAGAGGAAGGATTCGAGATACAATTCGGGA
CGAATCATATCGGGCATTTCCTACTTACCCAGCTACTACTACCCACACTG
CAACGAACGGTTGATCTTTCCAGGGATGTTCGTGTAGTAACGTTGTCCTC
TGCCGCGAATGTCGCCGCGCCTCCCTTCGAAGTCATGACTTCTACGCCGG
CTTTACTAGCGGATCACACATTGGCCCGATACTGTTCATCAAAGGCAGCG
AATATCCTTTTTGCGTCGGAGCTGGCTCGTCGCCATCCGGAGATTCTGTC
TGTCGCGGTACATCCCGGCTCCGTCGTGAGCGACCTATGGGATCATTCGA
TCAAGACGAGTGTCGTCGCCAAATACAGTATCGGCGCTCTTCTGGCGTTC
AGTCGGGGCATACGGAGCGGAGCACTCAACCAACTCTGGGCCGCAGGGGC
GAGAAGAGAATTGCTGACCAACGGAGCTTATTATGTTCCCATTGGGGTAC
ACGCTACGGGCAACCGGTACGCAAGGGACGCCGATATGGCACGGCGACTG
TGGGAGTGGACTGAGCAGCAGATTGCGGACAAATCGTAAATGGCATCTAT
TGTCAATTTCATCTCGAATGTGCTCCTCCGCCCTGTGGAGTCCTACTGCA
GCTTCGGTCCGACGGTGAGTGAAATCACCTTTGGACAGCTGGGGTACTCC
TTCAATCCCGAACGCGACATCAATGATCTGTCAGGGAAGGTTGTCTTCGT
CACTGGAGGAAATGCCGGTCTAGGAAAAGAAACCATCCTCCAACTCGCCC
ATCACCGCCCATCTCGCATCTACCTTGGTGCACGGAATGCGATCAAAGCC
GAAGATGCCATCGCTTCAATCCGGGAGCAGGTTCCATCCGCCGATATCAG
ACACATATCCCTCGACCTGTCCTCATTCAAGTCGATCCGTGCCGCTGCCG
AGCAGTTCACGTCAGAATGCGATCGCCTGGACCTCTTGATCCTTAACGCG
GGAATCATGAACTGCCCGCCTGCCCTGACAGAGGAAGGATTCGAGATACA
ATTCGGGACGAATCATATCGGGCATTTCCTACTTACCCAGCTACTACTAC
CCACACTGCAACGAACGGTTGATCTTTCCAGGGATGTTCGTGTAGTAACG
TTGTCCTCTGCCGCGAATGTCGCCGCGCCTCCCTTCGAAGTCATGACTTC
TACGCCGGCTTTACTAGCGGATCACACATTGGCCCGATACTGTTCATCAA
AGGCAGCGAATATCCTTTTTGCGTCGGAGCTGGCTCGTCGCCATCCGGAG
ATTCTGTCTGTCGCGGTACATCCCGGCTCCGTCGTGAGCGACCTATGGGA
TCATTCGATCAAGACGAGTGTCGTCGCCAAATACAGTATCGGCGCTCTTC
TGGCGTTCAGTCGGGGCATACGGAGCGGAGCACTCAACCAACTCTGGGCC
GCAGGGGCGAGAAGAGAATTGCTGACCAACGGAGCTTATTATGTTCCCAT
TGGGGTACACGCTACGGGCAACCGGTACGCAAGGGACGCCGATATGGCAC
GGCGACTGTGGGAGTGGACTGAGCAGCAGATTGCGGACAAATCGTAAATG
GCATCTATTGTCAATTTCATCTCGAATGTGCTCCTCCGCCCTGTGGAGTC
CTACTGCAGCTTCGGTCCGACGGTGAGTGAAATCACCTTTGGACAGCTGG
GGTACTCCTTCAATCCCGAACGCGACATCAATGATCTGTCAGGGAAGGTT
GTCTTCGTCACTGGAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003300-T1.utr3p1 | KJC3_003300-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003300-T1.utr5p1 | KJC3_003300-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1567424..1569427 - |
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