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KJC3_003528-T1, KJC3_003528-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003528-T1
Unique NameKJC3_003528-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:2182867..2184236-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003528-T1 ID=KJC3_003528-T1|Name=KJC3_003528-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1370bp|location=Sequence derived from alignment at ch3:2182867..2184236- (Aspergillus niger KJC3)
TTACTCCCTAAAACCGCAAAATAAAAACGCAACATGCCTCCCAAGACATA
CTGGTGCCAAGCGCCCGGCTGCAAGGCAAGCTATCAACGCAAAGAGCACC
TCCGTCGCCACGAGGCGCAACATACTCAACACCAGCTTCGTCAATGTACT
GCTTGTACCCAGAAATTCAGGCGGAGGTATAACTGGACCCTTGCCTTTCC
AATATCTATATGAAGCAACGTTGCTAATCCTGATATTCTAGTGATACGTT
ACGGCGCCATATGCAGAATGTACATGGAGTCAACGATATGCCCGACAGCA
AACATGCGTGTGCCCACTGTCGAAAACAAAAGTCTCGATGCCAAGGAGGA
CCGCCATGTAACAAGTGCTTGCGTCGCGGAATCCACTGTTCCCTGGAGCG
GCGGGCGGAACCGCATCCGGCTGATCGCCCAGACCCTCCAAGGATGCTTC
AACCCCCTCCCGCCCAACCGGAGACAGAAGATTCCGACCAGGAAAGCCAT
TATATAGGCATATATTTCAACGTATTCCACCCCCGTTGGCCTTTTGTTCA
TCAAGGGTCATTCGGTAATCATGAGGCACCATTGCTTGTCAAGTCAATGC
TTGTTCTTGGTCTGTGGATGAGTAAACAGAGAAAAGCCCAATCAAAAGCC
ATTGAACTGCATAATGTCTTGGGCTTGGCCATACGTCAGCAGACTGTACG
TAGGCAGATTACCCCTGTCTCTAGCTCTGTTCGCTAATGAAAAGACTGCA
GGACGCATGGGATGCCTCTATAGCAGATGCAACTAGTAACTGCAAATGGC
CTATCTCGACATATCAGGCTATATTGCTTCACATAATATTTGCGGGTCTA
TATAGGGGCGGTGGGGAGCTCGACCTTGACCTGAAGCCTTCTCTTGCCCC
AGCAGATGCCGATCTCCTAGAAAGGCTTGTCGTAAGCTGCAAGAAGCTAG
GAATGTTTCTCTACCCAAACATACTGGAGCATTATTCCAACAGTATATTG
CCTGGGTTTTCATGGGTGAGTATTGAGGACGCTAAGAGATTTAATCTGGC
TTTATTTAGAGTCTGCAGGGCTTTCGGGATCTTAGACAAAGAGGAGGGTA
TAATTATACCGGGAACCACAAGTGGGAGGCTCCGTGCATGCGACCTACAA
TTCCCGCCACCAAAGAATACTCCATTATGGAATGCTGTAACCAAAGATGA
GTGGGAATCTGCTGCTACAGCGGATATGGACCGCCATGGCATATATGATC
CTCTGCCACAGGAATGGATCTCAAACTCCGCAGACATCGTGGAACTTGTT
GTCACTGGATTTCCCCTGGATTAGATTGGTATCTGGGTAACAAATCTCGG
ACTTCGCACTATGAATGATG
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Coding sequence (CDS) from alignment at ch3:2182867..2184236-

>KJC3_003528-T1 ID=KJC3_003528-T1|Name=KJC3_003528-T1|organism=Aspergillus niger KJC3|type=CDS|length=3510bp|location=Sequence derived from alignment at ch3:2182867..2184236- (Aspergillus niger KJC3)
GACGCATGGGATGCCTCTATAGCAGATGCAACTAGTAACTGCAAATGGCC
TATCTCGACATATCAGGCTATATTGCTTCACATAATATTTGCGGGTCTAT
ATAGGGGCGGTGGGGAGCTCGACCTTGACCTGAAGCCTTCTCTTGCCCCA
GCAGATGCCGATCTCCTAGAAAGGCTTGTCGTAAGCTGCAAGAAGCTAGG
AATGTTTCTCTACCCAAACATACTGGAGCATTATTCCAACAGTATATTGC
CTGGGTTTTCATGGGTGAGTATTGAGGACGCTAAGAGATTTAATCTGGCT
TTATTTAGAGTCTGCAGGGCTTTCGGGATCTTAGACAAAGAGGAGGGTAT
AATTATACCGGGAACCACAAGTGGGAGGCTCCGTGCATGCGACCTACAAT
TCCCGCCACCAAAGAATACTCCATTATGGAATGCTGTAACCAAAGATGAG
TGGGAATCTGCTGCTACAGCGGATATGGACCGCCATGGCATATATGATCC
TCTGCCACAGGAATGGATCTCAAACTCCGCAGACATCGTGGAACTTGTTG
TCACTGGATTTCCCCTGGATTAGTGATACGTTACGGCGCCATATGCAGAA
TGTACATGGAGTCAACGATATGCCCGACAGCAAACATGCGTGTGCCCACT
GTCGAAAACAAAAGTCTCGATGCCAAGGAGGACCGCCATGTAACAAGTGC
TTGCGTCGCGGAATCCACTGTTCCCTGGAGCGGCGGGCGGAACCGCATCC
GGCTGATCGCCCAGACCCTCCAAGGATGCTTCAACCCCCTCCCGCCCAAC
CGGAGACAGAAGATTCCGACCAGGAAAGCCATTATATAGGCATATATTTC
AACGTATTCCACCCCCGTTGGCCTTTTGTTCATCAAGGGTCATTCGGTAA
TCATGAGGCACCATTGCTTGTCAAGTCAATGCTTGTTCTTGGTCTGTGGA
TGAGTAAACAGAGAAAAGCCCAATCAAAAGCCATTGAACTGCATAATGTC
TTGGGCTTGGCCATACGTCAGCAGACTATGCCTCCCAAGACATACTGGTG
CCAAGCGCCCGGCTGCAAGGCAAGCTATCAACGCAAAGAGCACCTCCGTC
GCCACGAGGCGCAACATACTCAACACCAGCTTCGTCAATGTACTGCTTGT
ACCCAGAAATTCAGGCGGAGGACGCATGGGATGCCTCTATAGCAGATGCA
ACTAGTAACTGCAAATGGCCTATCTCGACATATCAGGCTATATTGCTTCA
CATAATATTTGCGGGTCTATATAGGGGCGGTGGGGAGCTCGACCTTGACC
TGAAGCCTTCTCTTGCCCCAGCAGATGCCGATCTCCTAGAAAGGCTTGTC
GTAAGCTGCAAGAAGCTAGGAATGTTTCTCTACCCAAACATACTGGAGCA
TTATTCCAACAGTATATTGCCTGGGTTTTCATGGGTGAGTATTGAGGACG
CTAAGAGATTTAATCTGGCTTTATTTAGAGTCTGCAGGGCTTTCGGGATC
TTAGACAAAGAGGAGGGTATAATTATACCGGGAACCACAAGTGGGAGGCT
CCGTGCATGCGACCTACAATTCCCGCCACCAAAGAATACTCCATTATGGA
ATGCTGTAACCAAAGATGAGTGGGAATCTGCTGCTACAGCGGATATGGAC
CGCCATGGCATATATGATCCTCTGCCACAGGAATGGATCTCAAACTCCGC
AGACATCGTGGAACTTGTTGTCACTGGATTTCCCCTGGATTAGTGATACG
TTACGGCGCCATATGCAGAATGTACATGGAGTCAACGATATGCCCGACAG
CAAACATGCGTGTGCCCACTGTCGAAAACAAAAGTCTCGATGCCAAGGAG
GACCGCCATGTAACAAGTGCTTGCGTCGCGGAATCCACTGTTCCCTGGAG
CGGCGGGCGGAACCGCATCCGGCTGATCGCCCAGACCCTCCAAGGATGCT
TCAACCCCCTCCCGCCCAACCGGAGACAGAAGATTCCGACCAGGAAAGCC
ATTATATAGGCATATATTTCAACGTATTCCACCCCCGTTGGCCTTTTGTT
CATCAAGGGTCATTCGGTAATCATGAGGCACCATTGCTTGTCAAGTCAAT
GCTTGTTCTTGGTCTGTGGATGAGTAAACAGAGAAAAGCCCAATCAAAAG
CCATTGAACTGCATAATGTCTTGGGCTTGGCCATACGTCAGCAGACTATG
CCTCCCAAGACATACTGGTGCCAAGCGCCCGGCTGCAAGGCAAGCTATCA
ACGCAAAGAGCACCTCCGTCGCCACGAGGCGCAACATACTCAACACCAGC
TTCGTCAATGTACTGCTTGTACCCAGAAATTCAGGCGGAGGACGCATGGG
ATGCCTCTATAGCAGATGCAACTAGTAACTGCAAATGGCCTATCTCGACA
TATCAGGCTATATTGCTTCACATAATATTTGCGGGTCTATATAGGGGCGG
TGGGGAGCTCGACCTTGACCTGAAGCCTTCTCTTGCCCCAGCAGATGCCG
ATCTCCTAGAAAGGCTTGTCGTAAGCTGCAAGAAGCTAGGAATGTTTCTC
TACCCAAACATACTGGAGCATTATTCCAACAGTATATTGCCTGGGTTTTC
ATGGGTGAGTATTGAGGACGCTAAGAGATTTAATCTGGCTTTATTTAGAG
TCTGCAGGGCTTTCGGGATCTTAGACAAAGAGGAGGGTATAATTATACCG
GGAACCACAAGTGGGAGGCTCCGTGCATGCGACCTACAATTCCCGCCACC
AAAGAATACTCCATTATGGAATGCTGTAACCAAAGATGAGTGGGAATCTG
CTGCTACAGCGGATATGGACCGCCATGGCATATATGATCCTCTGCCACAG
GAATGGATCTCAAACTCCGCAGACATCGTGGAACTTGTTGTCACTGGATT
TCCCCTGGATTAGTGATACGTTACGGCGCCATATGCAGAATGTACATGGA
GTCAACGATATGCCCGACAGCAAACATGCGTGTGCCCACTGTCGAAAACA
AAAGTCTCGATGCCAAGGAGGACCGCCATGTAACAAGTGCTTGCGTCGCG
GAATCCACTGTTCCCTGGAGCGGCGGGCGGAACCGCATCCGGCTGATCGC
CCAGACCCTCCAAGGATGCTTCAACCCCCTCCCGCCCAACCGGAGACAGA
AGATTCCGACCAGGAAAGCCATTATATAGGCATATATTTCAACGTATTCC
ACCCCCGTTGGCCTTTTGTTCATCAAGGGTCATTCGGTAATCATGAGGCA
CCATTGCTTGTCAAGTCAATGCTTGTTCTTGGTCTGTGGATGAGTAAACA
GAGAAAAGCCCAATCAAAAGCCATTGAACTGCATAATGTCTTGGGCTTGG
CCATACGTCAGCAGACTATGCCTCCCAAGACATACTGGTGCCAAGCGCCC
GGCTGCAAGGCAAGCTATCAACGCAAAGAGCACCTCCGTCGCCACGAGGC
GCAACATACTCAACACCAGCTTCGTCAATGTACTGCTTGTACCCAGAAAT
TCAGGCGGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003528KJC3_003528Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003528-T1KJC3_003528-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003528-T1.cdsKJC3_003528-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003528-T1.utr3p1KJC3_003528-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003528-T1.exon3KJC3_003528-T1.exon3Aspergillus niger KJC3exon
KJC3_003528-T1.exon2KJC3_003528-T1.exon2Aspergillus niger KJC3exon
KJC3_003528-T1.exon1KJC3_003528-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003528-T1.utr5p1KJC3_003528-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR007219
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:2182867..2184236 -
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