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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2340536..2342827- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003580-T1 ID=KJC3_003580-T1|Name=KJC3_003580-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2292bp|location=Sequence derived from alignment at ch3:2340536..2342827- (Aspergillus niger KJC3)
CCTCGCCGTTTTTTCCGATTTTTACTGGTTGGGAGCCTTAGCAAATCGGC
TCGGACTTTTCCTTTTTTTGTTTGGGCTTCCACTTCCCTTCTTTCCTTCT
TTTCTTTCTCTTCTTCTTCTCCTCCTCTTTCCCTCTTCCACCCACTTTCC
AACTCATCCACCTTTCAGGTTTTTCTCATCACCATCTCATCAGCGTTGCA
ACGCTCTTGCGTATTGAAAGCTCTCTCCGCCAGGCTATTACTTTCGCCTG
CTGGTTTCCCACACGTTTTGTTCACGCTCAAACCACTCTGGTTAGTTCCC
TTCCCTTCCACCCCCTCCGGCCCTGCTGTCAGGCCTCCATCAGTATTACG
AAGCTGACCGGATCGTCTTGCTTTTCCTTTCCAACAGAAGAACCACGCGT
TGGTTTCTCTCTCTTCCTGCCGGAGAAAGCCACTGAAAAACAGAGTCGGT
CGAGAACTTGTCTATGTATTCGTCCTGCGTCAGAGATCTCGATCACCACC
TGCCGCTCAAGCTGCAATCGTTTCGCTTCACGTCGAAACCTTGTAGTATA
CATTCGAAGTCCTGTGGCTGAAAGCTAAGGGCTGCCGTATTCGCTGTGTC
CATCATTCGACTCAACTAAAAAAAATTCGATCTCAACAACCGCCATCATT
CCACCAAAATTAGGAATATTCCACGCATGTCTTGTTTTGTCAAGATATTC
CTGGTCCAGAATCCCTCCCGCTTCTTCTTCATATAACCATCTCGCTTAGT
CTCTTGAAGATTTCACCAATCAACAAACCGTCATCATGGCCACTGTCAAC
ATTCGTCGGGATGTCTCCGATCCCTTCTACCGTTACAAGATGGAGCGCCT
TCAGTCCAAGATTGAGGGCAAGGGCAACGGTATCAAGACCGTCGTCGTCA
ACCTGAACTCGGTCGCTCAGTCGCTCAGTCGGCCTCCGTCTTACGTGATC
AAGTACTTTGGCTTCGAGCTGGGTGCTCAGGCCAACGCCAAGCCCACCGA
TGATCGCTGGATCATCAACGGTGCCCATGATGCCCCCAAGCTTCAAGACT
ATCTGGACGGCTTTATTTCCAAGTTCGTGCTGTGCAAGAAATGTAAGAAT
CCGGAAACGGATGTCATCATCAAGGATGAGAAGATCTTTTTGGACTGCAA
GGCCTGTGGACAGCGCTCCGAGGTCGACTCCCGTCTGAAACTGAGCACCT
TCATCATCCGCAACGGCGCGCAAGGCAAGGGAGGGAAGAAGGACAAGGCC
TCGAAGAAGGCCCGTCGTGATCGAAACAAGGAGAAGAATGACACCGCGAA
TGGCGACAAGGATGGCAGCCCCGGAGATAGCAACAACTCCGAGAACGGTG
ATGAGGAGAACGGCGATGTCGCCCTGGAAGCAGGTAGCGATGACGAACTC
ACTCGCCGTATCAAGGCCGGTGCCAAGGACATCGAGGCTGATGAGATCGA
TGATGATGAATGGGCTGTTGACGTGTCGGAGGAGGCCGTCAAGGCTCGTG
CCAAGGAGCTCCCCGATGATCTCAAGCGCTCCCTCGTTCTCGAGGATGGT
GATGACGAGGGTGCTGACGGCCCCTCTGCCTACGACGAGCTTGGCAGCTG
GATCCTCAACGCCGCTTCTGAGAAGGGCGGTGTCACCGCTGTTAGTGACG
TCGATATCTACATGAAGGCCAAGGAATACGGCATCGAGAACAAGCACAAG
ACTGTCGCTGTTTTGGCTCAGACCATCTTCGATGAGAAGATCGCCAAGCA
GGTTCCTTCCCGTGCTGCTCTGCTGAAGAAGATGATCACCTCCGAACGCC
ACGAGAAGGCCTTCCTCGGTGGAACCGAGCGCTTTGTCGGCAAGGATCAC
CCTGAGCTCATTAGCCAGGTCCCCGCTGTCTTGCTCAAGTACTATGAGCA
CGACCTCGTCTCTGAGGAGACCCTCAAGGCGTGGGGTTCCAAGGCTAGCA
AGAAGTATGTCGACATCCAGACCAGCAAGAAGGTCCGCAAGGCTGCTGAA
CCCTTCCTCGAATGGCTTGAGAACGCCGAGAGTGAGGAGGAGAGCGAGGA
GGAGAGCGACTAGATCAGCGACTCGGCTTGTCGCAGTCATCTGTCTGCTC
AGTAGACAATTTTCGGGACTACTTGGTTTTTGTCGCGTGATTGTTTCGTT
TGTTCCAACTGATCTCCGCTCTTTTCGGATGTGACAGTTTCGCTCTGCCT
ATTGTTTGTTCCAGAAGTTTGAAATAAGCTCATCGAAAAAACATTAGTCT
TAGGTAGCTGCCAATAATATCGCTCTGCGTATTTGTGCTAGT back to topCoding sequence (CDS) from alignment at ch3:2340536..2342827- >KJC3_003580-T1 ID=KJC3_003580-T1|Name=KJC3_003580-T1|organism=Aspergillus niger KJC3|type=CDS|length=1278bp|location=Sequence derived from alignment at ch3:2340536..2342827- (Aspergillus niger KJC3)
ATGGCCACTGTCAACATTCGTCGGGATGTCTCCGATCCCTTCTACCGTTA
CAAGATGGAGCGCCTTCAGTCCAAGATTGAGGGCAAGGGCAACGGTATCA
AGACCGTCGTCGTCAACCTGAACTCGGTCGCTCAGTCGCTCAGTCGGCCT
CCGTCTTACGTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGGCCAA
CGCCAAGCCCACCGATGATCGCTGGATCATCAACGGTGCCCATGATGCCC
CCAAGCTTCAAGACTATCTGGACGGCTTTATTTCCAAGTTCGTGCTGTGC
AAGAAATGTAAGAATCCGGAAACGGATGTCATCATCAAGGATGAGAAGAT
CTTTTTGGACTGCAAGGCCTGTGGACAGCGCTCCGAGGTCGACTCCCGTC
TGAAACTGAGCACCTTCATCATCCGCAACGGCGCGCAAGGCAAGGGAGGG
AAGAAGGACAAGGCCTCGAAGAAGGCCCGTCGTGATCGAAACAAGGAGAA
GAATGACACCGCGAATGGCGACAAGGATGGCAGCCCCGGAGATAGCAACA
ACTCCGAGAACGGTGATGAGGAGAACGGCGATGTCGCCCTGGAAGCAGGT
AGCGATGACGAACTCACTCGCCGTATCAAGGCCGGTGCCAAGGACATCGA
GGCTGATGAGATCGATGATGATGAATGGGCTGTTGACGTGTCGGAGGAGG
CCGTCAAGGCTCGTGCCAAGGAGCTCCCCGATGATCTCAAGCGCTCCCTC
GTTCTCGAGGATGGTGATGACGAGGGTGCTGACGGCCCCTCTGCCTACGA
CGAGCTTGGCAGCTGGATCCTCAACGCCGCTTCTGAGAAGGGCGGTGTCA
CCGCTGTTAGTGACGTCGATATCTACATGAAGGCCAAGGAATACGGCATC
GAGAACAAGCACAAGACTGTCGCTGTTTTGGCTCAGACCATCTTCGATGA
GAAGATCGCCAAGCAGGTTCCTTCCCGTGCTGCTCTGCTGAAGAAGATGA
TCACCTCCGAACGCCACGAGAAGGCCTTCCTCGGTGGAACCGAGCGCTTT
GTCGGCAAGGATCACCCTGAGCTCATTAGCCAGGTCCCCGCTGTCTTGCT
CAAGTACTATGAGCACGACCTCGTCTCTGAGGAGACCCTCAAGGCGTGGG
GTTCCAAGGCTAGCAAGAAGTATGTCGACATCCAGACCAGCAAGAAGGTC
CGCAAGGCTGCTGAACCCTTCCTCGAATGGCTTGAGAACGCCGAGAGTGA
GGAGGAGAGCGAGGAGGAGAGCGACTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003580-T1.utr3p1 | KJC3_003580-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262M7B |
| DBxref | InterPro:IPR016024 |
| DBxref | InterPro:IPR016189 |
| DBxref | InterPro:IPR016190 |
| DBxref | InterPro:IPR016021 |
| DBxref | InterPro:IPR002735 |
| DBxref | InterPro:IPR003307 |
| DBxref | PFAM:PF02020 |
| DBxref | PFAM:PF01873 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2340536..2342827 - |
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