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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2522525..2523422- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003651-T1 ID=KJC3_003651-T1|Name=KJC3_003651-T1|organism=Aspergillus niger KJC3|type=mRNA|length=898bp|location=Sequence derived from alignment at ch3:2522525..2523422- (Aspergillus niger KJC3)
TCATTGTTTGGCGAACTCCGCTCACATTGCTTCCCGGCGTTTAAACCTTT
TTTCTTTATTCAATTCTTGCTTGTCTAACGCCGAGCATTATGAGCACCCT
CGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGG
GCAAGGTAAGCTTCATCTCTACGACTAGCGGACCATGACAATACTAATTC
ATTAATCCTCTCCAGAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGA
GAAGCCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACG
TTGGCAATCTGTATGTTACAGAGTATCTCCGTTGTCAAGTCCTTGCTAAC
AACACAGTTCTTTCTACACCACCGAAGAGCAGATCCATGAGCTATTTGCC
AAGTGAGCGGAAACCACCACCGAATGCGCTATTGACGAGTACCGAGCTGA
TGGAATACAGGTGCGGCGAGATTAAGCGGCTAGTTATGGGTCTTGATCGG
TACAACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTATTACACCCACCA
GGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGA
GAATCATCCGCACGGATCTGGATCCTGGCTTTGAGGAGGGTCGGCAATAC
GGGTATGTATATGATCGGGATTCTCGAACGCGCAGGCTGCTGACGTTGGT
AGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATA
CGATCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGAC
GACGGGAGGAAGAGGAGTATGGTAAGGGTAAGTAAAACAGGGGAAGACAG
ACATATTCAGGTTGGCGCAAAAACGGCGTTTTCATATGTACAATCTAT back to topCoding sequence (CDS) from alignment at ch3:2522525..2523422- >KJC3_003651-T1 ID=KJC3_003651-T1|Name=KJC3_003651-T1|organism=Aspergillus niger KJC3|type=CDS|length=2655bp|location=Sequence derived from alignment at ch3:2522525..2523422- (Aspergillus niger KJC3)
ACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACG
ATCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGA
CGGGAGGAAGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGC
GGCTAGTTATGGGTCTTGATCGGTACAACAAGACCCCTTGCGGATTTTGC
TTCGTCGAGTATTACACCCACCAGGATGCGCTGGACTGTCTGAAATACAT
TGGTGGCACAAAGCTGGACGAGAGAATCATCCGCACGGATCTGGATCCTG
GCTTTGAGGAGGGTCGGCAATACGGTTCTTTCTACACCACCGAAGAGCAG
ATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAG
GGCGAGAAGCCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCT
CTACGTTGGCAATCTATGAGCACCCTCGTTCACAACACCGTCGAACGCCT
GGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGT
CAGGTCCGCGATGAGTACCGGGAGGAATACGATCCTGGTCGCGGTGGCTA
TGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAAGAGGAGTATG
GTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGTTATGGGTCTTGA
TCGGTACAACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTATTACACCC
ACCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGAC
GAGAGAATCATCCGCACGGATCTGGATCCTGGCTTTGAGGAGGGTCGGCA
ATACGGTTCTTTCTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCA
AAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAGCCCGAAGATC
CCACCGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGA
GCACCCTCGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTAC
TATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACC
GGGAGGAATACGATCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGAT
GACCAGCGACGACGGGAGGAAGAGGAGTATGGTAAGGGTAAGTAAGTGCG
GCGAGATTAAGCGGCTAGTTATGGGTCTTGATCGGTACAACAAGACCCCT
TGCGGATTTTGCTTCGTCGAGTATTACACCCACCAGGATGCGCTGGACTG
TCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGCACGG
ATCTGGATCCTGGCTTTGAGGAGGGTCGGCAATACGGTTCTTTCTACACC
ACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTC
AGCCATGATGAGGGCGAGAAGCCCGAAGATCCCACCGACAACCTCAAGGA
TGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCTCGTTCACAACAC
CGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGT
AAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGATCCTGG
TCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGG
AAGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGT
TATGGGTCTTGATCGGTACAACAAGACCCCTTGCGGATTTTGCTTCGTCG
AGTATTACACCCACCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGC
ACAAAGCTGGACGAGAGAATCATCCGCACGGATCTGGATCCTGGCTTTGA
GGAGGGTCGGCAATACGGTTCTTTCTACACCACCGAAGAGCAGATCCATG
AGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGA
AGCCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACGTT
GGCAATCTATGAGCACCCTCGTTCACAACACCGTCGAACGCCTGGACCGG
CCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCC
GCGATGAGTACCGGGAGGAATACGATCCTGGTCGCGGTGGCTATGGACGT
GCCTATGCGGATGACCAGCGACGACGGGAGGAAGAGGAGTATGGTAAGGG
TAAGTAAGTGCGGCGAGATTAAGCGGCTAGTTATGGGTCTTGATCGGTAC
AACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTATTACACCCACCAGGA
TGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAA
TCATCCGCACGGATCTGGATCCTGGCTTTGAGGAGGGTCGGCAATACGGT
TCTTTCTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAG
CGTCGCAAGTTCAGCCATGATGAGGGCGAGAAGCCCGAAGATCCCACCGA
CAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCT
CGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGG
GCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003651-T1.utr3p1 | KJC3_003651-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003651-T1.utr5p1 | KJC3_003651-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264G04 |
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR034148 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | Nuclear cap-binding protein subunit 2 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2522525..2523422 - |
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