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KJC3_003668-T1, KJC3_003668-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003668-T1
Unique NameKJC3_003668-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:2562184..2564389-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003668-T1 ID=KJC3_003668-T1|Name=KJC3_003668-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2206bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
GCTTTTCCCATGCCGCTCCACATTTTCCTGAGACGCTCTTTGGCCCCCCA
TCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGT
TCTATTCTCCCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGG
ACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGT
CGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGC
CCCCGATCCGGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCT
AACCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCA
GCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTC
CTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGC
CGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATA
CAAGGGCATGCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAA
ATATCGGAGCTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCAT
CGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGG
CCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACC
GACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGT
CGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGA
TTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAG
CTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCT
GCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCG
AGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCG
AGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAA
CACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACG
ATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCT
GCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGA
TGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGA
CCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGT
ATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGT
CGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACC
CATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATC
ATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTT
CATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGC
GCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAG
ATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGT
CTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCG
ACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATT
TACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCA
CTCCCCTGTTTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATA
ATATCTTTCGTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACT
CGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGA
CTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGA
GGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTC
CGAATGGGGGAGAAGAGGGAGGTTAGATAGATAACTGACGTGCTCTCGAC
AATGAAAGACTGATGTTAGTTATCTATAATACATGCAAGCCATTACCACC
CCACACGATCGCCTTAAGTAGCGGCCACACAAATCAGACTTCCCTCAATC
TACCCC
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Coding sequence (CDS) from alignment at ch3:2562184..2564389-

>KJC3_003668-T1 ID=KJC3_003668-T1|Name=KJC3_003668-T1|organism=Aspergillus niger KJC3|type=CDS|length=6852bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
TTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCC
TCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCT
GCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGT
GGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAG
AGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGC
GGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGA
AGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCT
GCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCAT
TCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCC
TCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATT
TACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCAC
TTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGG
AGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACC
GACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCG
CAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGC
AAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACC
GAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGC
CGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAG
CCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTG
GCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTT
CAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACA
TCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAG
TGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCG
CAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCC
AGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCT
CCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCG
GAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCG
ATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGT
GAGGAAGAAGAAACTCATGCTCGGAATATGGTAGATAAGAGAGCCCGGCA
CGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGG
TTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGT
GAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGG
AACTGGATACAAGGGCATGCAATTATGGACAATAACGAAGGAAGACCTCC
GCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGAC
GATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCG
CAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACT
AGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGG
CGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCG
AATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAG
GAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAAC
GCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAA
GGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAG
ATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGC
GTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTG
CGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGC
CTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAG
GAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTA
CTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGC
CCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAG
GACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATC
AGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTG
AAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTC
AAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCC
GGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAA
CGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCC
TCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCAT
CAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGA
TGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGC
GGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGC
CATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCG
ACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTC
GACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGA
TCGTATCTTCCGTGAGGAAGAAGAAACTCATGCTCGGAATATGGTAGATA
AGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAG
AACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGA
GGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGC
TGGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCT
CGATCACTACTCGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCC
CTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAG
TCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGA
GGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAA
AAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCAT
CTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCG
CGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAG
CTGATTGTCGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAG
CTCGCAGATTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCA
GTTATCAGCTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCAC
TGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGA
GTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAG
AGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATC
CTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCA
CCTGAACGATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAG
ACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAG
CCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGAT
CTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGG
CCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGAC
AAGTACGTCGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACA
TGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAAC
AACCCATCATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGC
CAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCAT
GGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCG
CCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAA
CGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGA
CCCCATCGACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGC
GTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCTCGG
AATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACG
TCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGC
AATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAG
GTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATT
ATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCG
AGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTT
TCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCCTCTACGTCACG
TCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCAC
GGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTG
CGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAG
GAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGG
CGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCG
CTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACAT
TGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCATTCAGAAGATCA
ACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCCTCGTCACGAAC
AAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATTTACGAATACCT
CATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCA
AGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAG
GCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTA
CGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCG
AGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGCAAGACGACATG
TTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATC
CTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGC
GCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTC
CAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCA
GGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTTCAACTACACAA
TCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTC
AAGATGGCCGAACAACCCATCATCATCAACGGCACCGAGTGGCTCAGCCT
CAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCG
CCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTC
GAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGG
TCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATG
AGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCGATACCATTAAT
GAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGA
AACTCATGCTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGC
AGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCT
GTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCG
CCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACA
AGGGCATGCAATTATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAG
GCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGG
AG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0031119tRNA pseudouridine synthesis
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003668KJC3_003668Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003668-T1KJC3_003668-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003668-T1.cdsKJC3_003668-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003668-T1.utr3p1KJC3_003668-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003668-T1.exon4KJC3_003668-T1.exon4Aspergillus niger KJC3exon
KJC3_003668-T1.exon3KJC3_003668-T1.exon3Aspergillus niger KJC3exon
KJC3_003668-T1.exon2KJC3_003668-T1.exon2Aspergillus niger KJC3exon
KJC3_003668-T1.exon1KJC3_003668-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003668-T1.utr5p1KJC3_003668-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR041708
DBxrefInterPro:IPR020095
DBxrefInterPro:IPR001406
DBxrefInterPro:IPR020097
DBxrefPFAM:PF01416
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:2562184..2564389 -
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