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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2562184..2564389- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003668-T1 ID=KJC3_003668-T1|Name=KJC3_003668-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2206bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
GCTTTTCCCATGCCGCTCCACATTTTCCTGAGACGCTCTTTGGCCCCCCA
TCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGT
TCTATTCTCCCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGG
ACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGT
CGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGC
CCCCGATCCGGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCT
AACCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCA
GCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTC
CTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGC
CGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATA
CAAGGGCATGCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAA
ATATCGGAGCTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCAT
CGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGG
CCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACC
GACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGT
CGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGA
TTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAG
CTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCT
GCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCG
AGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCG
AGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAA
CACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACG
ATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCT
GCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGA
TGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGA
CCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGT
ATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGT
CGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACC
CATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATC
ATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTT
CATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGC
GCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAG
ATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGT
CTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCG
ACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATT
TACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCA
CTCCCCTGTTTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATA
ATATCTTTCGTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACT
CGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGA
CTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGA
GGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTC
CGAATGGGGGAGAAGAGGGAGGTTAGATAGATAACTGACGTGCTCTCGAC
AATGAAAGACTGATGTTAGTTATCTATAATACATGCAAGCCATTACCACC
CCACACGATCGCCTTAAGTAGCGGCCACACAAATCAGACTTCCCTCAATC
TACCCC back to topCoding sequence (CDS) from alignment at ch3:2562184..2564389- >KJC3_003668-T1 ID=KJC3_003668-T1|Name=KJC3_003668-T1|organism=Aspergillus niger KJC3|type=CDS|length=6852bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
TTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCC
TCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCT
GCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGT
GGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAG
AGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGC
GGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGA
AGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCT
GCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCAT
TCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCC
TCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATT
TACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCAC
TTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGG
AGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACC
GACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCG
CAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGC
AAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACC
GAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGC
CGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAG
CCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTG
GCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTT
CAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACA
TCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAG
TGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCG
CAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCC
AGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCT
CCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCG
GAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCG
ATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGT
GAGGAAGAAGAAACTCATGCTCGGAATATGGTAGATAAGAGAGCCCGGCA
CGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGG
TTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGT
GAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGG
AACTGGATACAAGGGCATGCAATTATGGACAATAACGAAGGAAGACCTCC
GCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGAC
GATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCG
CAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACT
AGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGG
CGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCG
AATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAG
GAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAAC
GCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAA
GGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAG
ATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGC
GTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTG
CGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGC
CTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAG
GAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTA
CTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGC
CCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAG
GACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATC
AGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTG
AAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTC
AAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCC
GGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAA
CGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCC
TCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCAT
CAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGA
TGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGC
GGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGC
CATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCG
ACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTC
GACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGA
TCGTATCTTCCGTGAGGAAGAAGAAACTCATGCTCGGAATATGGTAGATA
AGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAG
AACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGA
GGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGC
TGGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCT
CGATCACTACTCGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCC
CTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAG
TCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGA
GGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAA
AAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCAT
CTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCG
CGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAG
CTGATTGTCGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAG
CTCGCAGATTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCA
GTTATCAGCTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCAC
TGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGA
GTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAG
AGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATC
CTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCA
CCTGAACGATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAG
ACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAG
CCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGAT
CTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGG
CCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGAC
AAGTACGTCGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACA
TGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAAC
AACCCATCATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGC
CAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCAT
GGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCG
CCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAA
CGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGA
CCCCATCGACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGC
GTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCTCGG
AATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACG
TCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGC
AATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAG
GTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATT
ATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCG
AGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTT
TCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCCTCTACGTCACG
TCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCAC
GGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTG
CGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAG
GAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGG
CGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCG
CTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACAT
TGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCATTCAGAAGATCA
ACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCCTCGTCACGAAC
AAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATTTACGAATACCT
CATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCA
AGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAG
GCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTA
CGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCG
AGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGCAAGACGACATG
TTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATC
CTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGC
GCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTC
CAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCA
GGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTTCAACTACACAA
TCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTC
AAGATGGCCGAACAACCCATCATCATCAACGGCACCGAGTGGCTCAGCCT
CAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCG
CCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTC
GAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGG
TCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATG
AGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCGATACCATTAAT
GAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGA
AACTCATGCTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGC
AGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCT
GTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCG
CCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACA
AGGGCATGCAATTATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAG
GCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGG
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031119 | tRNA pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003668-T1.utr3p1 | KJC3_003668-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003668-T1.utr5p1 | KJC3_003668-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR041708 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020097 |
| DBxref | PFAM:PF01416 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2562184..2564389 - |
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