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KJC3_003842-T2, KJC3_003842-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003842-T2
Unique NameKJC3_003842-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3198672..3200064-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003842-T2 ID=KJC3_003842-T2|Name=KJC3_003842-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1393bp|location=Sequence derived from alignment at ch3:3198672..3200064- (Aspergillus niger KJC3)
CAGCAAATAGTACAAGACTGAGCATACTACAGCCGAAAAAAGCAGGCGGT
AAGGATATGCCCTCCTCCTCCGAAGGCGGTGAGATATCGATAAACCGTTT
TTCGCTTTTTTCTCCTCATGAGCATTAAGCATCTGGTTGTTTGCGAAACT
TGACGTATACGAACCATTTGATTTTCTATTCGCATCTAGCTGGGAATATA
CTATCCTTTGGAATCTGTTCCATCAAGATATCCCGCACCCGCGACTCGCG
TGTCCCGCCACTAAGTACATCTCTCCTCCGCTCCCCCCTCCTAAGAATAA
CCACCACCACCACCACTCACCCCCTCAGTATACACCTCGAACGAACGACA
ATATACCAGACAATGCGCTAACCGTAATGCCCAGGAACCGATATCTAATC
TCTGCATACAATCCGATCAAAATGCCTGCCTCCGTCCACTCCGAAGAACA
AGACCAGTCCATGCTGGACGCCTCCGCGCCTCAAGAGCAAGAGCAGACCG
ATGTCCTAGAGCTGGACGAGAAGCGCATTGTTGTTGTACGTATACACTAC
ATACACTGTGTGGACATGATTCACTTCCGGGCGTATGCTAATACCTGCTG
GATGGGATAGTTGCCCGGCTCGTCCGACACCGCAGCTTCGTTCCAATTCG
AGGGAGAGGGTCACACTCTGGGCAATGCGCTGCGGTATGCGATTATGAAG
AAGTGCGTACACATACTCTACTTTATTACAAACCTCTCTCTTCACTGTTA
TGTTGGATCTTGCTAACGAGTTTTCCTTGGGTTCAGCCCCGAAGTCGAAT
TCTGCGGTTACACCATCCCCCATCCTTCCGAGACGAAGATGAACCTTCGT
ATTCAGACTTATGGTTTGTTCTTCCCGCCCTCCTACCTTCTTTTCCGTCA
GAATTAAGATCACCAGTATTAATGAATGAACAAACAGAAACTACCACCGC
CGTCGAAGCCCTCGAGAAAGGTCTCGACACTCTAATGGACCTCTGTGATG
TCGTGACGGACAAGTTCACGACTGCCCGTGATGACTTTAATGCTGCGCAG
GCGGATCGCATGGAGGCTTAGGCATATATATACATATTATAGACTTTTGG
GTGGTTTTTGGCTTTTGATCTGTGTGTGTCATGTTTTGCTGTTTGATGGG
ATATGATGGCGTTGTGTGTGTATAGAAAAGTTATACCTTTTCCTTCTTCT
TCTTTTCTTCTTTTCTTACTCTCTTGGGGTGGTTAGATGTAATGGGGTTT
GATGTGGGTGTATTGGTTGGTTGATTGGTTGGCTGGAGATGCAGTGGTAC
TTAGTATTGATGGGGAGGGAGTGAGGGATACCATAGGTAGCATCTATTAC
TATATGCTCATAGATATCTGGGTTGGTCATGTGAATAGGGCTC
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Coding sequence (CDS) from alignment at ch3:3198672..3200064-

>KJC3_003842-T2 ID=KJC3_003842-T2|Name=KJC3_003842-T2|organism=Aspergillus niger KJC3|type=CDS|length=1848bp|location=Sequence derived from alignment at ch3:3198672..3200064- (Aspergillus niger KJC3)
AAACTACCACCGCCGTCGAAGCCCTCGAGAAAGGTCTCGACACTCTAATG
GACCTCTGTGATGTCGTGACGGACAAGTTCACGACTGCCCGTGATGACTT
TAATGCTGCGCAGGCGGATCGCATGGAGGCTTAGCCCCGAAGTCGAATTC
TGCGGTTACACCATCCCCCATCCTTCCGAGACGAAGATGAACCTTCGTAT
TCAGACTTATGTTGCCCGGCTCGTCCGACACCGCAGCTTCGTTCCAATTC
GAGGGAGAGGGTCACACTCTGGGCAATGCGCTGCGGTATGCGATTATGAA
GAAATGCCCAGGAACCGATATCTAATCTCTGCATACAATCCGATCAAAAT
GCCTGCCTCCGTCCACTCCGAAGAACAAGACCAGTCCATGCTGGACGCCT
CCGCGCCTCAAGAGCAAGAGCAGACCGATGTCCTAGAGCTGGACGAGAAG
CGCATTGTTGTTAAACTACCACCGCCGTCGAAGCCCTCGAGAAAGGTCTC
GACACTCTAATGGACCTCTGTGATGTCGTGACGGACAAGTTCACGACTGC
CCGTGATGACTTTAATGCTGCGCAGGCGGATCGCATGGAGGCTTAGCCCC
GAAGTCGAATTCTGCGGTTACACCATCCCCCATCCTTCCGAGACGAAGAT
GAACCTTCGTATTCAGACTTATGTTGCCCGGCTCGTCCGACACCGCAGCT
TCGTTCCAATTCGAGGGAGAGGGTCACACTCTGGGCAATGCGCTGCGGTA
TGCGATTATGAAGAAATGCCCAGGAACCGATATCTAATCTCTGCATACAA
TCCGATCAAAATGCCTGCCTCCGTCCACTCCGAAGAACAAGACCAGTCCA
TGCTGGACGCCTCCGCGCCTCAAGAGCAAGAGCAGACCGATGTCCTAGAG
CTGGACGAGAAGCGCATTGTTGTTAAACTACCACCGCCGTCGAAGCCCTC
GAGAAAGGTCTCGACACTCTAATGGACCTCTGTGATGTCGTGACGGACAA
GTTCACGACTGCCCGTGATGACTTTAATGCTGCGCAGGCGGATCGCATGG
AGGCTTAGCCCCGAAGTCGAATTCTGCGGTTACACCATCCCCCATCCTTC
CGAGACGAAGATGAACCTTCGTATTCAGACTTATGTTGCCCGGCTCGTCC
GACACCGCAGCTTCGTTCCAATTCGAGGGAGAGGGTCACACTCTGGGCAA
TGCGCTGCGGTATGCGATTATGAAGAAATGCCCAGGAACCGATATCTAAT
CTCTGCATACAATCCGATCAAAATGCCTGCCTCCGTCCACTCCGAAGAAC
AAGACCAGTCCATGCTGGACGCCTCCGCGCCTCAAGAGCAAGAGCAGACC
GATGTCCTAGAGCTGGACGAGAAGCGCATTGTTGTTAAACTACCACCGCC
GTCGAAGCCCTCGAGAAAGGTCTCGACACTCTAATGGACCTCTGTGATGT
CGTGACGGACAAGTTCACGACTGCCCGTGATGACTTTAATGCTGCGCAGG
CGGATCGCATGGAGGCTTAGCCCCGAAGTCGAATTCTGCGGTTACACCAT
CCCCCATCCTTCCGAGACGAAGATGAACCTTCGTATTCAGACTTATGTTG
CCCGGCTCGTCCGACACCGCAGCTTCGTTCCAATTCGAGGGAGAGGGTCA
CACTCTGGGCAATGCGCTGCGGTATGCGATTATGAAGAAATGCCCAGGAA
CCGATATCTAATCTCTGCATACAATCCGATCAAAATGCCTGCCTCCGTCC
ACTCCGAAGAACAAGACCAGTCCATGCTGGACGCCTCCGCGCCTCAAGAG
CAAGAGCAGACCGATGTCCTAGAGCTGGACGAGAAGCGCATTGTTGTT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0046983protein dimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPC19_1KJC3_003842Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003842-T2KJC3_003842-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003842-T2.cdsKJC3_003842-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003842-T2.utr3p1KJC3_003842-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003842-T2.exon4KJC3_003842-T2.exon4Aspergillus niger KJC3exon
KJC3_003842-T2.exon3KJC3_003842-T2.exon3Aspergillus niger KJC3exon
KJC3_003842-T2.exon2KJC3_003842-T2.exon2Aspergillus niger KJC3exon
KJC3_003842-T2.exon1KJC3_003842-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003842-T2.utr5p1KJC3_003842-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR033898
DBxrefInterPro:IPR008193
DBxrefInterPro:IPR036603
DBxrefInterPro:IPR009025
DBxrefPFAM:PF13656
DBxrefPFAM:PF01193
Product variant 2
ProductRNA polymerase subunit AC19
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3198672..3200064 -
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