KJC3_003850-T1, KJC3_003850-T1 (mRNA) Aspergillus niger KJC3

Overview


Name	KJC3_003850-T1
Unique Name	KJC3_003850-T1
Type	mRNA
Organism	Aspergillus niger KJC3

Sequences

The following sequences are available for this feature:

mRNA from alignment at ch3:3228644..3230506+
coding sequence from alignment at ch3:3228644..3230506+

mRNA from alignment at ch3:3228644..3230506+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJC3_003850-T1 ID=KJC3_003850-T1|Name=KJC3_003850-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1863bp|location=Sequence derived from alignment at ch3:3228644..3230506+ (Aspergillus niger KJC3)
TGTCGATATGCGGGATCCTCAATCCTCGAAGAATGATAGACAAGTTACTA
CGTCGACGAATGAGCTCAAAGAGAGTAGTTCGCGTCTGAACCGGTCGGGG
AAATCCCGAATAAGACATTGGGCCCCCAAAGTGAAGACTGGTTGTATGAC
ATGCCGGTAGGCTTCATAACTCTGCCGCTGGAACATGGAGTCGTTGACGC
AGGCAGAATCCGGAGAGTGAAATGTGACGAGACAAAACCCGCGTTAGTAC
TCTTCCATGACTGATTATAGCAAAGATACTATTATAGTCCGGGCTGCTGA
CGGTTATAGCTCGGTAGTTGCCAGCGATGCTCTTCCACCGGAAGAAGATG
CGATGGCTACAATTTGATCCCCCAAAAGCCGCCCACCCCGGCCCTCGGTC
TGATTCAAATGCCTTCCTATTGGGAGCTAGTGTCAGGCGACCGTGTAGAA
ACTGAGAGTTTTCGGTTCTTTCACTCAGTCACTACGCCCAATTTGGCTGG
CTTCTTCGACCAGGGCCGCTGGGCTCGCAGATTGCTCCAAATGTCGCATC
AGTACCCAGTTCTGTGGCATGCCATGACCGCGGTGGCCTGCATTCACCGA
GACTTCATGACCAACACCACACCTATTACCGTCTCACGGTCGCAGGATAG
CCTCCAGGTGAGGCTTGCGTTGCAACAGTGGAACAAGTCCATTCAAAGAC
TACAAGAACTGCTGTCAGAACGGGTTTTGACCAAATTTGACAGACTGGTC
ATCCTTAGTGTTTGTATCTTATTCATTACCATGGCGAGCTTGCAGGGCCG
CCAGTGGCAGGCTTTCGTGCACATCAACAGCGGACTGAAACTAATTTATC
AGTGGAATTTCGCGGACCGAGGCAAAAGCCAGAGAGATGAGGATTTAGAT
CTGGATGTGTTGCTTGTCTTGTTCACCCAACTGGACTCGCAAGCGCGCCC
CTACCTTCCTAGCCTTTCGAATAGCCTTCACTGGACAGACAAGCAGATTA
TTTTGTCGTCGTCTACCATCCCCTTCAAGACTTTGCTGGAAGCGTGTGTT
GCTTTGGAGGTGCATTTTAACAGCATGATGCAGATCTTCACAAGCAATTC
CATATACATCAATGGTCCAGATGCTGGGATTCAGATCAAGAAACAGCAGT
GCCTTATTGATCTTACTGAATGGGATGCCAGGCTCGACAAATATCTTGAA
ACGACACCACATCCAGAAGATGGGAAGGCTTTGAAACTTCTCTACGCCCG
GCGTAGACTCGCACAAGTGGCTCTGTCTATGGACCTGACAAAAGGCGAAC
TAGCTCACGACGACTTCGTCGAGGACTACGCATATATGCTCGAGTTGATG
GGCTACATTCTAGAAGACCCCATGAATTCCTTAGACAGCCAGCCTGGGAA
TATAGATCGGCCACAAAGAATGAGCTTCCGCCTAGAGACGATCACGACGG
AGCCATTATTCCTGATTGCACTCCGCTGTCGCGAACCCACGATCAGGCGG
CAGGCGATCCGTCTACTCAGACAGTACCCGCGGCGCGAAGGCATCTGCGA
GGGCATGGCAGCCCTGAAGATTGCGGAGCGAGTGATGGAAATTGAAGAAG
AATGTTTGACCAGTCCTGAATTCGCTTGCGCTCATAGAAAGTGGATATGT
GAGAACCACCGGGTAACTTGGCTACAGGTCTTCCTGGTTCATGATCGGCA
GGCGCGGACTGTGATGCACACTCGGGAGGATTTGCTGCACGGTCGACCCG
GAAGAGAGATTCTGACGACTTATTGGTGATTTTATTTGGTGTAGAAATAT
GTATATAGATAGACGGCATGCTGCACAGGCTACCTGCTATGAGTTATGAG
GAAGATGGCAGGG

Coding sequence (CDS) from alignment at ch3:3228644..3230506+

>KJC3_003850-T1 ID=KJC3_003850-T1|Name=KJC3_003850-T1|organism=Aspergillus niger KJC3|type=CDS|length=4941bp|location=Sequence derived from alignment at ch3:3228644..3230506+ (Aspergillus niger KJC3)
ATGCGGGATCCTCAATCCTCGAAGAATGATAGACAAGTTACTACGTCGAC
GAATGAGCTCAAAGAGAGTAGTTCGCGTCTGAACCGGTCGGGGAAATCCC
GAATAAGACATTGGGCCCCCAAAGTGAAGACTGGTTGTATGACATGCCGA
ATCCGGAGAGTGAAATGTGACGAGACAAAACCCGCTTGCCAGCGATGCTC
TTCCACCGGAAGAAGATGCGATGGCTACAATTTGATCCCCCAAAAGCCGC
CCACCCCGGCCCTCGGTCTGATTCAAATGCCTTCCTATTGGGAGCTAGTG
TCAGGCGACCGTGTAGAAACTGAGAGTTTTCGGTTCTTTCACTCAGTCAC
TACGCCCAATTTGGCTGGCTTCTTCGACCAGGGCCGCTGGGCTCGCAGAT
TGCTCCAAATGTCGCATCAGTACCCAGTTCTGTGGCATGCCATGACCGCG
GTGGCCTGCATTCACCGAGACTTCATGACCAACACCACACCTATTACCGT
CTCACGGTCGCAGGATAGCCTCCAGGTGAGGCTTGCGTTGCAACAGTGGA
ACAAGTCCATTCAAAGACTACAAGAACTGCTGTCAGAACGGGTTTTGACC
AAATTTGACAGACTGGTCATCCTTAGTGTTTGTATCTTATTCATTACCAT
GGCGAGCTTGCAGGGCCGCCAGTGGCAGGCTTTCGTGCACATCAACAGCG
GACTGAAACTAATTTATCAGTGGAATTTCGCGGACCGAGGCAAAAGCCAG
AGAGATGAGGATTTAGATCTGGATGTGTTGCTTGTCTTGTTCACCCAACT
GGACTCGCAAGCGCGCCCCTACCTTCCTAGCCTTTCGAATAGCCTTCACT
GGACAGACAAGCAGATTATTTTGTCGTCGTCTACCATCCCCTTCAAGACT
TTGCTGGAAGCGTGTGTTGCTTTGGAGGTGCATTTTAACAGCATGATGCA
GATCTTCACAAGCAATTCCATATACATCAATGGTCCAGATGCTGGGATTC
AGATCAAGAAACAGCAGTGCCTTATTGATCTTACTGAATGGGATGCCAGG
CTCGACAAATATCTTGAAACGACACCACATCCAGAAGATGGGAAGGCTTT
GAAACTTCTCTACGCCCGGCGTAGACTCGCACAAGTGGCTCTGTCTATGG
ACCTGACAAAAGGCGAACTAGCTCACGACGACTTCGTCGAGGACTACGCA
TATATGCTCGAGTTGATGGGCTACATTCTAGAAGACCCCATGAATTCCTT
AGACAGCCAGCCTGGGAATATAGATCGGCCACAAAGAATGAGCTTCCGCC
TAGAGACGATCACGACGGAGCCATTATTCCTGATTGCACTCCGCTGTCGC
GAACCCACGATCAGGCGGCAGGCGATCCGTCTACTCAGACAGTACCCGCG
GCGCGAAGGCATCTGCGAGGGCATGGCAGCCCTGAAGATTGCGGAGCGAG
TGATGGAAATTGAAGAAGAATGTTTGACCAGTCCTGAATTCGCTTGCGCT
CATAGAAAGTGGATATGTGAGAACCACCGGGTAACTTGGCTACAGGTCTT
CCTGGTTCATGATCGGCAGGCGCGGACTGTGATGCACACTCGGGAGGATT
TGCTGCACGGTCGACCCGGAAGAGAGATTCTGACGACTTATTGGTGAATG
CGGGATCCTCAATCCTCGAAGAATGATAGACAAGTTACTACGTCGACGAA
TGAGCTCAAAGAGAGTAGTTCGCGTCTGAACCGGTCGGGGAAATCCCGAA
TAAGACATTGGGCCCCCAAAGTGAAGACTGGTTGTATGACATGCCGAATC
CGGAGAGTGAAATGTGACGAGACAAAACCCGCTTGCCAGCGATGCTCTTC
CACCGGAAGAAGATGCGATGGCTACAATTTGATCCCCCAAAAGCCGCCCA
CCCCGGCCCTCGGTCTGATTCAAATGCCTTCCTATTGGGAGCTAGTGTCA
GGCGACCGTGTAGAAACTGAGAGTTTTCGGTTCTTTCACTCAGTCACTAC
GCCCAATTTGGCTGGCTTCTTCGACCAGGGCCGCTGGGCTCGCAGATTGC
TCCAAATGTCGCATCAGTACCCAGTTCTGTGGCATGCCATGACCGCGGTG
GCCTGCATTCACCGAGACTTCATGACCAACACCACACCTATTACCGTCTC
ACGGTCGCAGGATAGCCTCCAGGTGAGGCTTGCGTTGCAACAGTGGAACA
AGTCCATTCAAAGACTACAAGAACTGCTGTCAGAACGGGTTTTGACCAAA
TTTGACAGACTGGTCATCCTTAGTGTTTGTATCTTATTCATTACCATGGC
GAGCTTGCAGGGCCGCCAGTGGCAGGCTTTCGTGCACATCAACAGCGGAC
TGAAACTAATTTATCAGTGGAATTTCGCGGACCGAGGCAAAAGCCAGAGA
GATGAGGATTTAGATCTGGATGTGTTGCTTGTCTTGTTCACCCAACTGGA
CTCGCAAGCGCGCCCCTACCTTCCTAGCCTTTCGAATAGCCTTCACTGGA
CAGACAAGCAGATTATTTTGTCGTCGTCTACCATCCCCTTCAAGACTTTG
CTGGAAGCGTGTGTTGCTTTGGAGGTGCATTTTAACAGCATGATGCAGAT
CTTCACAAGCAATTCCATATACATCAATGGTCCAGATGCTGGGATTCAGA
TCAAGAAACAGCAGTGCCTTATTGATCTTACTGAATGGGATGCCAGGCTC
GACAAATATCTTGAAACGACACCACATCCAGAAGATGGGAAGGCTTTGAA
ACTTCTCTACGCCCGGCGTAGACTCGCACAAGTGGCTCTGTCTATGGACC
TGACAAAAGGCGAACTAGCTCACGACGACTTCGTCGAGGACTACGCATAT
ATGCTCGAGTTGATGGGCTACATTCTAGAAGACCCCATGAATTCCTTAGA
CAGCCAGCCTGGGAATATAGATCGGCCACAAAGAATGAGCTTCCGCCTAG
AGACGATCACGACGGAGCCATTATTCCTGATTGCACTCCGCTGTCGCGAA
CCCACGATCAGGCGGCAGGCGATCCGTCTACTCAGACAGTACCCGCGGCG
CGAAGGCATCTGCGAGGGCATGGCAGCCCTGAAGATTGCGGAGCGAGTGA
TGGAAATTGAAGAAGAATGTTTGACCAGTCCTGAATTCGCTTGCGCTCAT
AGAAAGTGGATATGTGAGAACCACCGGGTAACTTGGCTACAGGTCTTCCT
GGTTCATGATCGGCAGGCGCGGACTGTGATGCACACTCGGGAGGATTTGC
TGCACGGTCGACCCGGAAGAGAGATTCTGACGACTTATTGGTGAATGCGG
GATCCTCAATCCTCGAAGAATGATAGACAAGTTACTACGTCGACGAATGA
GCTCAAAGAGAGTAGTTCGCGTCTGAACCGGTCGGGGAAATCCCGAATAA
GACATTGGGCCCCCAAAGTGAAGACTGGTTGTATGACATGCCGAATCCGG
AGAGTGAAATGTGACGAGACAAAACCCGCTTGCCAGCGATGCTCTTCCAC
CGGAAGAAGATGCGATGGCTACAATTTGATCCCCCAAAAGCCGCCCACCC
CGGCCCTCGGTCTGATTCAAATGCCTTCCTATTGGGAGCTAGTGTCAGGC
GACCGTGTAGAAACTGAGAGTTTTCGGTTCTTTCACTCAGTCACTACGCC
CAATTTGGCTGGCTTCTTCGACCAGGGCCGCTGGGCTCGCAGATTGCTCC
AAATGTCGCATCAGTACCCAGTTCTGTGGCATGCCATGACCGCGGTGGCC
TGCATTCACCGAGACTTCATGACCAACACCACACCTATTACCGTCTCACG
GTCGCAGGATAGCCTCCAGGTGAGGCTTGCGTTGCAACAGTGGAACAAGT
CCATTCAAAGACTACAAGAACTGCTGTCAGAACGGGTTTTGACCAAATTT
GACAGACTGGTCATCCTTAGTGTTTGTATCTTATTCATTACCATGGCGAG
CTTGCAGGGCCGCCAGTGGCAGGCTTTCGTGCACATCAACAGCGGACTGA
AACTAATTTATCAGTGGAATTTCGCGGACCGAGGCAAAAGCCAGAGAGAT
GAGGATTTAGATCTGGATGTGTTGCTTGTCTTGTTCACCCAACTGGACTC
GCAAGCGCGCCCCTACCTTCCTAGCCTTTCGAATAGCCTTCACTGGACAG
ACAAGCAGATTATTTTGTCGTCGTCTACCATCCCCTTCAAGACTTTGCTG
GAAGCGTGTGTTGCTTTGGAGGTGCATTTTAACAGCATGATGCAGATCTT
CACAAGCAATTCCATATACATCAATGGTCCAGATGCTGGGATTCAGATCA
AGAAACAGCAGTGCCTTATTGATCTTACTGAATGGGATGCCAGGCTCGAC
AAATATCTTGAAACGACACCACATCCAGAAGATGGGAAGGCTTTGAAACT
TCTCTACGCCCGGCGTAGACTCGCACAAGTGGCTCTGTCTATGGACCTGA
CAAAAGGCGAACTAGCTCACGACGACTTCGTCGAGGACTACGCATATATG
CTCGAGTTGATGGGCTACATTCTAGAAGACCCCATGAATTCCTTAGACAG
CCAGCCTGGGAATATAGATCGGCCACAAAGAATGAGCTTCCGCCTAGAGA
CGATCACGACGGAGCCATTATTCCTGATTGCACTCCGCTGTCGCGAACCC
ACGATCAGGCGGCAGGCGATCCGTCTACTCAGACAGTACCCGCGGCGCGA
AGGCATCTGCGAGGGCATGGCAGCCCTGAAGATTGCGGAGCGAGTGATGG
AAATTGAAGAAGAATGTTTGACCAGTCCTGAATTCGCTTGCGCTCATAGA
AAGTGGATATGTGAGAACCACCGGGTAACTTGGCTACAGGTCTTCCTGGT
TCATGATCGGCAGGCGCGGACTGTGATGCACACTCGGGAGGATTTGCTGC
ACGGTCGACCCGGAAGAGAGATTCTGACGACTTATTGGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042025	host cell nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
KJC3_003850	KJC3_003850	Aspergillus niger KJC3	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003850-T1	KJC3_003850-T1-protein	Aspergillus niger KJC3	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003850-T1.utr5p1	KJC3_003850-T1.utr5p1	Aspergillus niger KJC3	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003850-T1.exon1	KJC3_003850-T1.exon1	Aspergillus niger KJC3	exon
KJC3_003850-T1.exon2	KJC3_003850-T1.exon2	Aspergillus niger KJC3	exon
KJC3_003850-T1.exon3	KJC3_003850-T1.exon3	Aspergillus niger KJC3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003850-T1.cds	KJC3_003850-T1.cds	Aspergillus niger KJC3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003850-T1.utr3p1	KJC3_003850-T1.utr3p1	Aspergillus niger KJC3	three_prime_UTR

Properties


Property Name	Value
DBxref	InterPro:IPR036864
DBxref	InterPro:IPR021858
DBxref	InterPro:IPR001138
DBxref	PFAM:PF00172
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC3	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ch3	supercontig	ch3:3228644..3230506 +

Main menu

You are here

KJC3_003850-T1, KJC3_003850-T1 (mRNA) Aspergillus niger KJC3

Main menu

User login

You are here

KJC3_003850-T1, KJC3_003850-T1 (mRNA) Aspergillus niger KJC3