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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4134860..4136902- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004179-T1 ID=KJC3_004179-T1|Name=KJC3_004179-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2043bp|location=Sequence derived from alignment at ch3:4134860..4136902- (Aspergillus niger KJC3)
ATGCCCACCGCCTCATCGCCGGCATCAGGGCACTCGCCCTCGGTGTCCAA
GCGACGTAAAATCCGCAAGGGCACCTTCTCCTGTTGGGAGTGCAAGCATC
GGAAGCGACGTTGCGTGTTCGAGCCCCTCAAGGACTCCACTTGTGTCTAT
TGCCAGTCTCGAGGTATACCCTGCGTCAGCCAGGAACATGCCGATCCACG
AAGCCGCAGTAGCGATGGCCAGATATCGGAGCGGATTTGCCACGTCGAAT
CTCTAGTCAACCAATTGATTCGGCAGCGTGACAGCTGTCAGCCTCAGGTC
CAGCCTGTGATCGGGGTTCGCGACCGAGCGAGTTCCCCTCGGCCGAGAGA
AGCATCTATATCATTCCCCTTTCAGCAGATGTGCAGGTCTCTGGCGGCGT
TATTCCCTCATCCGAACACGACCGCACTCATCTTGACCAAGGGTCGCTTC
TTCAGTCTGCCTTTCGAGACTTGTCGATCCCCACTCCGAGACCAATCGGC
TGTCTGCTCTGGCCTAGAACAGTCTGGAGATGTCTTCAGGCTACCATATT
CTACTTCCCATCCAATCCAATTTGCTCAGAAACTCATACAACTTGCACTC
GGTTTACAGCAGCTGGACCTCGCCTCATGTCTACACCCACAACTGCAGCT
AGAGCAAAAGTGGTCCACAGGCGACTCTGCCCGGCGCTACGTCGATCTGG
CAGTTAGTCATGTAACATCACAGGACGCGCTCGTAGATTCTCTTGATGGT
CTTGACACTCTCTTACTGCAGGCCCGCTATCACCTTAACTCTGGGGAGCT
GCGCTCGGCCTGGCTTATTTTCCGTCGTGCTTTGAGCATCGCTCAACTGA
TCGGACTTCCAAGCCGGAATGAACAAGCCGGCAGCCGCGCGGAATCCCTT
TGGGTTCAGCTTGTGTATAATGATCGGTTCTTGTCACTAATGCTTGGGCT
TCCATGCGCGGTGAAGGATCTCGAGCTCCTGAATTGGCAGGCTTTAGATA
CCTACCCACCTCTTAGAAAATTATACCGCATCCATTCTGTCATCGCAGCT
CGGATAATTGTCCGAAATGTGCGTCTGCAGCATTGCAATTTGTTGTCTCA
AAGACAGTTGGATACCACGTATGATCATTACGGCGTGACTCGCGGCATAA
ATGATGAACTAAGGAAGAGTGCCCGATCAGTGCCTATTGATTGCTGGAAG
GTCCCTACCTTGAACAATACTATGTCGGATACGGATAAGATGGACAGGAT
CTCCATGCTTGTTACCCAGATGCACCAATATTATCTCGTGATCCTTCTTC
ATCAACCGTACTTGTTACTGCAGCTGAGCAACCATACATATTTCAGTCCA
TCAGCAATCTCACCTATACTACCCGACTACTCATACAGCAGACATGTGGT
CGTCCCTGCAAGCCGTGAAGTACTGAGTCGCTGTCTCGAGTTCCGGAATA
TACGGCCTATTCTCTCTTACCGAGGGCTTGAACATAAAGCCTTCGTCGCA
GCAGTGGCCCTGCTCTTGTCTCATATATTGGGACACCGGTCGGGCTCCGA
GAACGTCCTAGAACATCAACGGCCTCAAGACCTGGCCATGATTCAACAGG
CAATTGACACCTTGGACGAACTCTGCACGTCCAATGACCCAAATAGAGAC
TCTGCGATCCAAACAAGAAATTTGTTGAGCAAACTCCTGAGTATTGAGGC
TGAGGCAGCCGACGGTATCATTTACATTTCATGCATTGAAAAGGACAGTG
TTGGTTCAGATGATGCCCTGTGCGGTACTTCCCACCAAGGCCTGAAGTTT
TCCATTCCGTACTTTGGAGTTATCTGCGTTATTCCTGGGCCAGTTCCAAA
TCTGCAAAATGATGGCCTACTCGCAGGGTCCGCACAGGCAACAGGACCAC
ATGGCCTTCTCCCTTCGACATTTACACAACTGGAGCTTGATTGTGGCTTG
AATTCTCAGCTCGCTCTATCGTCTAATCTTCAAGCCGAGATGCAGTTGCT
TTATGACTGGTCACTTGAACCGAACGTCCTCAACGAAGGCTAA back to topCoding sequence (CDS) from alignment at ch3:4134860..4136902- >KJC3_004179-T1 ID=KJC3_004179-T1|Name=KJC3_004179-T1|organism=Aspergillus niger KJC3|type=CDS|length=2043bp|location=Sequence derived from alignment at ch3:4134860..4136902- (Aspergillus niger KJC3)
ATGCCCACCGCCTCATCGCCGGCATCAGGGCACTCGCCCTCGGTGTCCAA
GCGACGTAAAATCCGCAAGGGCACCTTCTCCTGTTGGGAGTGCAAGCATC
GGAAGCGACGTTGCGTGTTCGAGCCCCTCAAGGACTCCACTTGTGTCTAT
TGCCAGTCTCGAGGTATACCCTGCGTCAGCCAGGAACATGCCGATCCACG
AAGCCGCAGTAGCGATGGCCAGATATCGGAGCGGATTTGCCACGTCGAAT
CTCTAGTCAACCAATTGATTCGGCAGCGTGACAGCTGTCAGCCTCAGGTC
CAGCCTGTGATCGGGGTTCGCGACCGAGCGAGTTCCCCTCGGCCGAGAGA
AGCATCTATATCATTCCCCTTTCAGCAGATGTGCAGGTCTCTGGCGGCGT
TATTCCCTCATCCGAACACGACCGCACTCATCTTGACCAAGGGTCGCTTC
TTCAGTCTGCCTTTCGAGACTTGTCGATCCCCACTCCGAGACCAATCGGC
TGTCTGCTCTGGCCTAGAACAGTCTGGAGATGTCTTCAGGCTACCATATT
CTACTTCCCATCCAATCCAATTTGCTCAGAAACTCATACAACTTGCACTC
GGTTTACAGCAGCTGGACCTCGCCTCATGTCTACACCCACAACTGCAGCT
AGAGCAAAAGTGGTCCACAGGCGACTCTGCCCGGCGCTACGTCGATCTGG
CAGTTAGTCATGTAACATCACAGGACGCGCTCGTAGATTCTCTTGATGGT
CTTGACACTCTCTTACTGCAGGCCCGCTATCACCTTAACTCTGGGGAGCT
GCGCTCGGCCTGGCTTATTTTCCGTCGTGCTTTGAGCATCGCTCAACTGA
TCGGACTTCCAAGCCGGAATGAACAAGCCGGCAGCCGCGCGGAATCCCTT
TGGGTTCAGCTTGTGTATAATGATCGGTTCTTGTCACTAATGCTTGGGCT
TCCATGCGCGGTGAAGGATCTCGAGCTCCTGAATTGGCAGGCTTTAGATA
CCTACCCACCTCTTAGAAAATTATACCGCATCCATTCTGTCATCGCAGCT
CGGATAATTGTCCGAAATGTGCGTCTGCAGCATTGCAATTTGTTGTCTCA
AAGACAGTTGGATACCACGTATGATCATTACGGCGTGACTCGCGGCATAA
ATGATGAACTAAGGAAGAGTGCCCGATCAGTGCCTATTGATTGCTGGAAG
GTCCCTACCTTGAACAATACTATGTCGGATACGGATAAGATGGACAGGAT
CTCCATGCTTGTTACCCAGATGCACCAATATTATCTCGTGATCCTTCTTC
ATCAACCGTACTTGTTACTGCAGCTGAGCAACCATACATATTTCAGTCCA
TCAGCAATCTCACCTATACTACCCGACTACTCATACAGCAGACATGTGGT
CGTCCCTGCAAGCCGTGAAGTACTGAGTCGCTGTCTCGAGTTCCGGAATA
TACGGCCTATTCTCTCTTACCGAGGGCTTGAACATAAAGCCTTCGTCGCA
GCAGTGGCCCTGCTCTTGTCTCATATATTGGGACACCGGTCGGGCTCCGA
GAACGTCCTAGAACATCAACGGCCTCAAGACCTGGCCATGATTCAACAGG
CAATTGACACCTTGGACGAACTCTGCACGTCCAATGACCCAAATAGAGAC
TCTGCGATCCAAACAAGAAATTTGTTGAGCAAACTCCTGAGTATTGAGGC
TGAGGCAGCCGACGGTATCATTTACATTTCATGCATTGAAAAGGACAGTG
TTGGTTCAGATGATGCCCTGTGCGGTACTTCCCACCAAGGCCTGAAGTTT
TCCATTCCGTACTTTGGAGTTATCTGCGTTATTCCTGGGCCAGTTCCAAA
TCTGCAAAATGATGGCCTACTCGCAGGGTCCGCACAGGCAACAGGACCAC
ATGGCCTTCTCCCTTCGACATTTACACAACTGGAGCTTGATTGTGGCTTG
AATTCTCAGCTCGCTCTATCGTCTAATCTTCAAGCCGAGATGCAGTTGCT
TTATGACTGGTCACTTGAACCGAACGTCCTCAACGAAGGCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR007219 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4134860..4136902 - |
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