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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4273034..4274630- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004226-T1 ID=KJC3_004226-T1|Name=KJC3_004226-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1597bp|location=Sequence derived from alignment at ch3:4273034..4274630- (Aspergillus niger KJC3)
CGCAATATTTGAGACAACACCTCAATATGAAACGAGGATCCAGGGTCCTA
CATTTCCTCCAGGGGCTGTCGGCAGTTATGAACTTTTCGACCGGAAAAGA
TTCGCAATAGTCGTGAGTATAAGAACCTCGTACCTGCTCACACTGATGTC
TACTTGCTCATCATTCCACACTCATTCAAAATCTTACCAACAACACTCCT
TCTGTCATTCTTTTCTATTGTTAACAATTAATCATGCACTCGTTTGCTTC
TCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCTTCGCTTCTGCCTCTC
CTATCGAAGCTCGAGACAGCTGCACGTTCACCACCGCTGCCGCTGCTAAA
GCGGGCAAGGCGAAATGCTCTACTATCACCCTTAACAACATCGAAGTTCC
AGCTGGAACCACCCTCGACCTGACCGGTCTCACCAGCGGTACCAAGGTCA
TCTTCGAGGGCACCACGACCTTCCAGTACGAAGAATGGGCAGGCCCCTTG
ATCTCCATGAGTGGCGAACATATCACCGTCACTGGTGCCTCCGGCCACCT
CATCAATTGCGATGGTGCGCGCTGGTGGGATGGCAAGGGAACCAGCGGAA
AGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTTGACTCCTCGTCTATT
ACTGGATTAAACATCAAAAACACCCCCCTTATGGCGTTTAGTGTCCAGGC
GAATGACATTACGTTTACCGATGTTACCATCAATAATGCGGATGGCGACA
CCCAGGGTGGACACAACACTGATGCGTTCGATGTTGGCAACTCGGTCGGG
GTGAATATCATTAAGCCTTGGGTCCATAACCAGGATGACTGTCTTGCGGT
TAACTCTGGCGAGGTAAGCAGCTCTGCATATATGCTTGATTCGTAATTAT
ATTGATATTCTATAGAACATCTGGTTCACCGGCGGCACCTGCATTGGCGG
CCACGGTCTCTCCATCGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCA
AGAACGTCACCATCGAACACTCCACCGTGAGCAATTCCGAAAACGCCGTC
CGAATTAAGACCATCTCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTA
CTCCAACATCGTCATGTCTGGCATCTCCGATTACGGCGTGGTCATTCAGC
AGGATTACGAAGACGGCAAGCCTACGGGTAAGCCGACGAACGGTGTCACT
ATTCAGGATGTTAAGCTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGC
TACTGAGATCTATCTTCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCT
GGGACGATGTGAAAGTTACCGGGGGGAAGAAGTCCACCGCTTGCAAGAAC
TTCCCTTCGGTGGCCTCTTGTTAGGCTGCTAGGTTGGTGAGTTGTAGCCC
TAGCTGAAATTCGTCTGCTTCGTCTGCTTCGTCTGCTTCTTCTGCTTCGT
CTGCTTTGTCTGCTTTGTCTGCTTCGTCCACTTCGTCCACTTCGACTGGT
TAGATGGGCCTTGTAATAGTTTTTAGAGAGAACAGAATATGTACAGTAAG
CCTTAGAGGTGGTACCGAGTTGTATATTTATTTAAAATGTTACCTAT back to topCoding sequence (CDS) from alignment at ch3:4273034..4274630- >KJC3_004226-T1 ID=KJC3_004226-T1|Name=KJC3_004226-T1|organism=Aspergillus niger KJC3|type=CDS|length=2178bp|location=Sequence derived from alignment at ch3:4273034..4274630- (Aspergillus niger KJC3)
AACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCAT
CGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCG
AACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATC
TCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCAT
GTCTGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACG
GCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAG
CTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCT
TCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAG
TTACCGGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCC
TCTTGTTAGATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGC
CGGCGCCACCTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCA
CGTTCACCACCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACT
ATCACCCTTAACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGAC
CGGTCTCACCAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCC
AGTACGAAGAATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATC
ACCGTCACTGGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTG
GTGGGATGGCAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACG
CCCATGGCCTTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACC
CCCCTTATGGCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGT
TACCATCAATAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATG
CGTTCGATGTTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTC
CATAACCAGGATGACTGTCTTGCGGTTAACTCTGGCGAGAACATCTGGTT
CACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCG
GCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACC
GTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCAC
TGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCT
CCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACG
GGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGT
GACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGT
CTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGG
AAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAGAT
GCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCT
TCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACC
GCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAA
CAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCA
GCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAA
TGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACTGG
TGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCA
AGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTT
GACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATGGC
GTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAATA
ATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATGTT
GGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGA
TGACTGTCTTGCGGTTAACTCTGGCGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004226-T1.utr3p1 | KJC3_004226-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004226-T1.utr5p1 | KJC3_004226-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-21) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR012334 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR006626 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4273034..4274630 - |
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