|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4380764..4383136+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004266-T1 ID=KJC3_004266-T1|Name=KJC3_004266-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2373bp|location=Sequence derived from alignment at ch3:4380764..4383136+ (Aspergillus niger KJC3)
TCATAAAGAGCTAATGAGCTGATGAGCTAATCTAGGGATGGTGGTATATT
TGTGGGGTAAATCAACTCGAGAATCAATCCATCTAGCCTGGGCTCCACTG
TCACGAAAATGAAGACCAATGTACACAGCACAAGGGCAAAAATGAAGATG
CCATTGAAGAAGAATTATATACTCTTGGATTTGCCTTTTGCTCCATCCAT
CTGCATAGAGTCATGCTGCTCTGTGTTTGCCGATCACAAACACCAACCGC
GGATGGTCACCTGGCCCATCGGAGCTACCCGCGCTAAAAGGTCAAGCTAA
GATAACGCGAAGCTCTTCTTTTCCCCGATCTCTTCCTCTCTCAAAACTTA
CCCTGCCTTTCCCTGGTGTCGCTACCTGTTTTCACCATGAAACCATACAT
CGGTATCCCAGCGGTGATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGT
CGCTGACCACCCCCGGCCTCATTGCGGCTGCGCTGACGGCCAGCGCCCAT
GCTCTTCATCCATGGTCCGCTCCTTTTGTCTTATTAGGAGTATTCTACTT
TGGGGGCACCAAAGTTACCAAGGTATATATCCTCTCCAACATCGTCGATC
CGCGGTTTGTAATTGCTAATCGCACACTTGCCAGGTTAAACACGATGTCA
AAGCTCGTTTGACGCTCTCCGCGACCGGCTCCGAGGGCGGCGAGGGTCAA
CGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGCGACAGTGCTTGC
TCTCCTACATACATATGTTCTGGCAGGGAAGCCTGCGAGCGCAACACAGT
GCTTTTCGAATGGTCATGATGTGGCGGATCTGTTGGTCGTGGGAATAGTC
GCGTAAGACTTACCTCTATTCCTTACCCTTTGTTATGCGCTTGCTGACAG
GTCATCGTTGTAGGAACTACGCCGCTGTCGCCGCTGATACATACTCCTCC
GAGCTTGGTATTCTGTCCAAGTCCAAACCCCGCCTGATCACCTCTCCCAC
GTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGTGTAACGGGCACCGGAC
TCCTAGCAGGAGTGGTGGGTGCATTTACAATTGCCGTGTCATCCGCTGCT
ATTCTACCTTTCTGCTCCGAAGGCGATACTCTCTCGACACTCAAGAGCCG
GGCTCAGTGGATTCTGGCTGTGACAATGTGGGGAGGTTTGGGCAGTGTGC
TGGATAGTGTCTTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAGA
ACAGGAAAGGTCATCGAAGGAGCCGGTGGCCAGAAGGTCAGCACATGATT
AACATCTACCGGATTGTTAGGAAGAGGATAGTGCTGATATTGTCATGCAG
GTCCTTGTTCACCCCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACCAC
CGGTCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCAGGTACACGCCACAG
AGGCAGTCGCTAACACTGCCACTCTGAAAGGAACCAGGGCTACTGGAACG
TCGACGGGGACGTCCGCAGGAGAAATTGAATCGGGACACGAAAGCCGGAG
GGTAGAGAGTGGACGGGACCTCTTGGATAACAATGCCGTGAATCTTCTGA
TGGCCTTTGCAATGAGTGTTGGGGCTATGGGTGCTGCAAGTTGGGCCTGG
GGTTTAAATCTGGCTGACTTGGCTTTGTGGTAGCCATTGGGTGCTTGAAG
CGTATCTATGACTCGCAATGCTATGACGATTTTCATGACCTTGACTGATT
CGAAAGACTAGATTCTTGATCCGTAGAAAAGGTAGGAAGGGGAGAAAGAA
AGACGTGCATTTGACACTCGCTAGTCGGCGGGTAAGGAGAGCGTCATGAA
GGAATCGCTATATATAATGTCAAAGACCATTACTCCAACAATACCCCACT
TCTTCACCGAACTGGCTATGTCTTCGCCAAAAAGGCAGACCAGCATGCAG
CGGGTTAGCGCTGATTATACCTCTCTTGGACGACGGTTTGGTACCGTCGT
CTCTCCCTCTCCAGATAACTCAACGTGACGCTCTGGTCCCTGTGATAGTC
AATGAAATCCTCCCATTGTTCTTGTGGCACAATAACTTCATAAGGCTGTT
CTGCGAAAATATCTGTCGGCCGGAATCTGGGTGCCATGCCTTTGGGGTGC
ATCTCGAAAGTGAATAACTTTTGCTTGCCACCAAGTTTGAGTCCACTGGA
ATCTTCAGGTTGCCTCTCGAGAAGTGACTTGGGGCGGGCTACGTTCTGCC
GATGCGTGGATTGTGGGATATTGTCTTGCGACAACAAGTGAAGGCTATCA
TTCCATCTTCGTTTCGAGTCTCGGTTGTCTGGCACTTCACTAACCGTTGG
TATCTTCTGCAGTTGCATTGCGG back to topCoding sequence (CDS) from alignment at ch3:4380764..4383136+ >KJC3_004266-T1 ID=KJC3_004266-T1|Name=KJC3_004266-T1|organism=Aspergillus niger KJC3|type=CDS|length=4440bp|location=Sequence derived from alignment at ch3:4380764..4383136+ (Aspergillus niger KJC3)
ATGAAACCATACATCGGTATCCCAGCGGTGATAGTGCTCGTTCATCGTGC
TTGGTCGCGAAAGTCGCTGACCACCCCCGGCCTCATTGCGGCTGCGCTGA
CGGCCAGCGCCCATGCTCTTCATCCATGGTCCGCTCCTTTTGTCTTATTA
GGAGTATTCTACTTTGGGGGCACCAAAGTTACCAAGGTTAAACACGATGT
CAAAGCTCGTTTGACGCTCTCCGCGACCGGCTCCGAGGGCGGCGAGGGTC
AACGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGCGACAGTGCTT
GCTCTCCTACATACATATGTTCTGGCAGGGAAGCCTGCGAGCGCAACACA
GTGCTTTTCGAATGGTCATGATGTGGCGGATCTGTTGGTCGTGGGAATAG
TCGCGAACTACGCCGCTGTCGCCGCTGATACATACTCCTCCGAGCTTGGT
ATTCTGTCCAAGTCCAAACCCCGCCTGATCACCTCTCCCACGTTCCGCGT
TGTCCCCCCCGGTACCAATGGCGGTGTAACGGGCACCGGACTCCTAGCAG
GAGTGGTGGGTGCATTTACAATTGCCGTGTCATCCGCTGCTATTCTACCT
TTCTGCTCCGAAGGCGATACTCTCTCGACACTCAAGAGCCGGGCTCAGTG
GATTCTGGCTGTGACAATGTGGGGAGGTTTGGGCAGTGTGCTGGATAGTG
TCTTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAGAACAGGAAAG
GTCATCGAAGGAGCCGGTGGCCAGAAGGTCCTTGTTCACCCCTCTTCTAC
TAAGCCCGGCGTCCCAGCTGATACCACCGGTCTGAAGCCTGCCGGATCAA
GCTCGAGTGCGCAGGTACACGCCACAGAGGCAGTCGCTAACACTGCCACT
CTGAAAGGAACCAGGGCTACTGGAACGTCGACGGGGACGTCCGCAGGAGA
AATTGAATCGGGACACGAAAGCCGGAGGGTAGAGAGTGGACGGGACCTCT
TGGATAACAATGCCGTGAATCTTCTGATGGCCTTTGCAATGAGTGTTGGG
GCTATGGGTGCTGCAAGTTGGGCCTGGGGTTTAAATCTGGCTGACTTGGC
TTTGTGGTAGATGAAACCATACATCGGTATCCCAGCGGTGATAGTGCTCG
TTCATCGTGCTTGGTCGCGAAAGTCGCTGACCACCCCCGGCCTCATTGCG
GCTGCGCTGACGGCCAGCGCCCATGCTCTTCATCCATGGTCCGCTCCTTT
TGTCTTATTAGGAGTATTCTACTTTGGGGGCACCAAAGTTACCAAGGTTA
AACACGATGTCAAAGCTCGTTTGACGCTCTCCGCGACCGGCTCCGAGGGC
GGCGAGGGTCAACGTACCCACATCCAAGTCCTGGCGAACTCTGTTGTCGC
GACAGTGCTTGCTCTCCTACATACATATGTTCTGGCAGGGAAGCCTGCGA
GCGCAACACAGTGCTTTTCGAATGGTCATGATGTGGCGGATCTGTTGGTC
GTGGGAATAGTCGCGAACTACGCCGCTGTCGCCGCTGATACATACTCCTC
CGAGCTTGGTATTCTGTCCAAGTCCAAACCCCGCCTGATCACCTCTCCCA
CGTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGTGTAACGGGCACCGGA
CTCCTAGCAGGAGTGGTGGGTGCATTTACAATTGCCGTGTCATCCGCTGC
TATTCTACCTTTCTGCTCCGAAGGCGATACTCTCTCGACACTCAAGAGCC
GGGCTCAGTGGATTCTGGCTGTGACAATGTGGGGAGGTTTGGGCAGTGTG
CTGGATAGTGTCTTGGGTGGATTGCTCCAGGCCAGCGTGGTGGACAAGAG
AACAGGAAAGGTCATCGAAGGAGCCGGTGGCCAGAAGGTCCTTGTTCACC
CCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACCACCGGTCTGAAGCCT
GCCGGATCAAGCTCGAGTGCGCAGGTACACGCCACAGAGGCAGTCGCTAA
CACTGCCACTCTGAAAGGAACCAGGGCTACTGGAACGTCGACGGGGACGT
CCGCAGGAGAAATTGAATCGGGACACGAAAGCCGGAGGGTAGAGAGTGGA
CGGGACCTCTTGGATAACAATGCCGTGAATCTTCTGATGGCCTTTGCAAT
GAGTGTTGGGGCTATGGGTGCTGCAAGTTGGGCCTGGGGTTTAAATCTGG
CTGACTTGGCTTTGTGGTAGATGAAACCATACATCGGTATCCCAGCGGTG
ATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGTCGCTGACCACCCCCGG
CCTCATTGCGGCTGCGCTGACGGCCAGCGCCCATGCTCTTCATCCATGGT
CCGCTCCTTTTGTCTTATTAGGAGTATTCTACTTTGGGGGCACCAAAGTT
ACCAAGGTTAAACACGATGTCAAAGCTCGTTTGACGCTCTCCGCGACCGG
CTCCGAGGGCGGCGAGGGTCAACGTACCCACATCCAAGTCCTGGCGAACT
CTGTTGTCGCGACAGTGCTTGCTCTCCTACATACATATGTTCTGGCAGGG
AAGCCTGCGAGCGCAACACAGTGCTTTTCGAATGGTCATGATGTGGCGGA
TCTGTTGGTCGTGGGAATAGTCGCGAACTACGCCGCTGTCGCCGCTGATA
CATACTCCTCCGAGCTTGGTATTCTGTCCAAGTCCAAACCCCGCCTGATC
ACCTCTCCCACGTTCCGCGTTGTCCCCCCCGGTACCAATGGCGGTGTAAC
GGGCACCGGACTCCTAGCAGGAGTGGTGGGTGCATTTACAATTGCCGTGT
CATCCGCTGCTATTCTACCTTTCTGCTCCGAAGGCGATACTCTCTCGACA
CTCAAGAGCCGGGCTCAGTGGATTCTGGCTGTGACAATGTGGGGAGGTTT
GGGCAGTGTGCTGGATAGTGTCTTGGGTGGATTGCTCCAGGCCAGCGTGG
TGGACAAGAGAACAGGAAAGGTCATCGAAGGAGCCGGTGGCCAGAAGGTC
CTTGTTCACCCCTCTTCTACTAAGCCCGGCGTCCCAGCTGATACCACCGG
TCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCAGGTACACGCCACAGAGG
CAGTCGCTAACACTGCCACTCTGAAAGGAACCAGGGCTACTGGAACGTCG
ACGGGGACGTCCGCAGGAGAAATTGAATCGGGACACGAAAGCCGGAGGGT
AGAGAGTGGACGGGACCTCTTGGATAACAATGCCGTGAATCTTCTGATGG
CCTTTGCAATGAGTGTTGGGGCTATGGGTGCTGCAAGTTGGGCCTGGGGT
TTAAATCTGGCTGACTTGGCTTTGTGGTAGATGAAACCATACATCGGTAT
CCCAGCGGTGATAGTGCTCGTTCATCGTGCTTGGTCGCGAAAGTCGCTGA
CCACCCCCGGCCTCATTGCGGCTGCGCTGACGGCCAGCGCCCATGCTCTT
CATCCATGGTCCGCTCCTTTTGTCTTATTAGGAGTATTCTACTTTGGGGG
CACCAAAGTTACCAAGGTTAAACACGATGTCAAAGCTCGTTTGACGCTCT
CCGCGACCGGCTCCGAGGGCGGCGAGGGTCAACGTACCCACATCCAAGTC
CTGGCGAACTCTGTTGTCGCGACAGTGCTTGCTCTCCTACATACATATGT
TCTGGCAGGGAAGCCTGCGAGCGCAACACAGTGCTTTTCGAATGGTCATG
ATGTGGCGGATCTGTTGGTCGTGGGAATAGTCGCGAACTACGCCGCTGTC
GCCGCTGATACATACTCCTCCGAGCTTGGTATTCTGTCCAAGTCCAAACC
CCGCCTGATCACCTCTCCCACGTTCCGCGTTGTCCCCCCCGGTACCAATG
GCGGTGTAACGGGCACCGGACTCCTAGCAGGAGTGGTGGGTGCATTTACA
ATTGCCGTGTCATCCGCTGCTATTCTACCTTTCTGCTCCGAAGGCGATAC
TCTCTCGACACTCAAGAGCCGGGCTCAGTGGATTCTGGCTGTGACAATGT
GGGGAGGTTTGGGCAGTGTGCTGGATAGTGTCTTGGGTGGATTGCTCCAG
GCCAGCGTGGTGGACAAGAGAACAGGAAAGGTCATCGAAGGAGCCGGTGG
CCAGAAGGTCCTTGTTCACCCCTCTTCTACTAAGCCCGGCGTCCCAGCTG
ATACCACCGGTCTGAAGCCTGCCGGATCAAGCTCGAGTGCGCAGGTACAC
GCCACAGAGGCAGTCGCTAACACTGCCACTCTGAAAGGAACCAGGGCTAC
TGGAACGTCGACGGGGACGTCCGCAGGAGAAATTGAATCGGGACACGAAA
GCCGGAGGGTAGAGAGTGGACGGGACCTCTTGGATAACAATGCCGTGAAT
CTTCTGATGGCCTTTGCAATGAGTGTTGGGGCTATGGGTGCTGCAAGTTG
GGCCTGGGGTTTAAATCTGGCTGACTTGGCTTTGTGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004266-T1.utr5p1 | KJC3_004266-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR002794 |
| DBxref | PFAM:PF01940 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4380764..4383136 + |
|
