You are here

Home

KJC3_004302-T1, KJC3_004302-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004302-T1
Unique NameKJC3_004302-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4477637..4478913+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004302-T1 ID=KJC3_004302-T1|Name=KJC3_004302-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1277bp|location=Sequence derived from alignment at ch3:4477637..4478913+ (Aspergillus niger KJC3)
AGCTAGTATAGCAGTCGGTCGAGGACAGGACAAAAGCTTGATTTTCACGA
CTCTTTAATTATTTCATCATCTTATACCCGCCCTTTCCAATTTTCCACTG
CACCCAACCTACATTAGAAAGGCTGAGAGACAAAAATGGATTGGGATGCT
TTGTGGTTCAACGTTGCCACGTTAATTGCAGGGGTGTTTGTCCTTGACTA
TGGCGCAGACAAGTTCATCGACCACACCGTTATTGTTGGGCGGCGCCTTG
GTATCTCGCAAACTGTTATTGCCCTCTTGACAGCTGGCGCTGAATGGGAA
GAGGTGTTTTGCAATTCAGTGCAATCCGATCCAATGTCTATCCTGGCTAA
TCTCTTCACTAGCTCGCTGTGGTGATTGCCGCCATCCTGCAGCATCGCAG
CCCCCTAGCCCTTGGGAACGTCATGGGCTCGACTATCTCCAACATTCTCG
GTGCCTTTTCTTTGGGACTACTCTTCTACCCCCAAGGCGTGGAGTTTGAT
CGCAGCGCAAAGTTATACTCGGCGCTGCTGTTCATGGTTACCACGCTCTT
CGTGGTGTTAGCATTCTTCAACCAATTGAACCAGATCGTCGGCGGGGTTT
TGATTGCCATATTTGGTCTCTACATCGTCTCTATCATCTACGCCATCTAT
AAAGGTGTAGCATCGCCCCCGGAGCTATCAGACAGTGATAGTGACGGGGA
ATCCAGCGATAGCGAGGACGGGGACGGGGAATCCATCAATCATGCACCTG
TCTCCGAGACATCGCCTCTCATTGAGAATGAGCCTGCGCCTTCATCAGCT
GACAAAGAAAGCAGACGAAGCAGAAGCCTCCCCTATCACATATTCCAGCT
CATTCTCGGATTCATCTCGCTCTCAATGTCAGGATATATCCTCTCCCACA
GCGCCGTCACCATCGCCGACTCCCTGCACCTCTCGGGATCTGTCTTCGGT
CTGACCGTTGTCTCGTTCGCCACCACTCTTCCAGAGAAGCTGGTTGCAAT
CATTAGTGGCTCCCGCGGCCACGGCGGCATTATGGCTGCGACGACTGCAG
GAAGCAACATTTTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCAGTGGCG
GGGTACCAGGTACAAGAGGCAGATAATTTTGTGCTTTTTGAGCTGGTGGC
CGTGTGGGTGTCCTCTGGGGCATTTTGTGCTGTTATCTTTTTGGGACTGG
GGAGGAGTGCAGGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTCCTTTGC
CTGGAGTTTACCGTTTACCGGCGCTGA
back to top

Coding sequence (CDS) from alignment at ch3:4477637..4478913+

>KJC3_004302-T1 ID=KJC3_004302-T1|Name=KJC3_004302-T1|organism=Aspergillus niger KJC3|type=CDS|length=2166bp|location=Sequence derived from alignment at ch3:4477637..4478913+ (Aspergillus niger KJC3)
ATGGATTGGGATGCTTTGTGGTTCAACGTTGCCACGTTAATTGCAGGGGT
GTTTGTCCTTGACTATGGCGCAGACAAGTTCATCGACCACACCGTTATTG
TTGGGCGGCGCCTTGGTATCTCGCAAACTGTTATTGCCCTCTTGACAGCT
GGCGCTGAATGGGAAGAGCTCGCTGTGGTGATTGCCGCCATCCTGCAGCA
TCGCAGCCCCCTAGCCCTTGGGAACGTCATGGGCTCGACTATCTCCAACA
TTCTCGGTGCCTTTTCTTTGGGACTACTCTTCTACCCCCAAGGCGTGGAG
TTTGATCGCAGCGCAAAGTTATACTCGGCGCTGCTGTTCATGGTTACCAC
GCTCTTCGTGGTGTTAGCATTCTTCAACCAATTGAACCAGATCGTCGGCG
GGGTTTTGATTGCCATATTTGGTCTCTACATCGTCTCTATCATCTACGCC
ATCTATAAAGGTGTAGCATCGCCCCCGGAGCTATCAGACAGTGATAGTGA
CGGGGAATCCAGCGATAGCGAGGACGGGGACGGGGAATCCATCAATCATG
CACCTGTCTCCGAGACATCGCCTCTCATTGAGAATGAGCCTGCGCCTTCA
TCAGCTGACAAAGAAAGCAGACGAAGCAGAAGCCTCCCCTATCACATATT
CCAGCTCATTCTCGGATTCATCTCGCTCTCAATGTCAGGATATATCCTCT
CCCACAGCGCCGTCACCATCGCCGACTCCCTGCACCTCTCGGGATCTGTC
TTCGGTCTGACCGTTGTCTCGTTCGCCACCACTCTTCCAGAGAAGCTGGT
TGCAATCATTAGTGGCTCCCGCGGCCACGGCGGCATTATGGCTGCGACGA
CTGCAGGAAGCAACATTTTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCA
GTGGCGGGGTACCAGGTACAAGAGGCAGATAATTTTGTGCTTTTTGAGCT
GGTGGCCGTGTGGGTGTCCTCTGGGGCATTTTGTGCTGTTATCTTTTTGG
GACTGGGGAGGAGTGCAGGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTC
CTTTGCCTGGAGTTTACCGTTTACCGGCGCTGAATGGATTGGGATGCTTT
GTGGTTCAACGTTGCCACGTTAATTGCAGGGGTGTTTGTCCTTGACTATG
GCGCAGACAAGTTCATCGACCACACCGTTATTGTTGGGCGGCGCCTTGGT
ATCTCGCAAACTGTTATTGCCCTCTTGACAGCTGGCGCTGAATGGGAAGA
GCTCGCTGTGGTGATTGCCGCCATCCTGCAGCATCGCAGCCCCCTAGCCC
TTGGGAACGTCATGGGCTCGACTATCTCCAACATTCTCGGTGCCTTTTCT
TTGGGACTACTCTTCTACCCCCAAGGCGTGGAGTTTGATCGCAGCGCAAA
GTTATACTCGGCGCTGCTGTTCATGGTTACCACGCTCTTCGTGGTGTTAG
CATTCTTCAACCAATTGAACCAGATCGTCGGCGGGGTTTTGATTGCCATA
TTTGGTCTCTACATCGTCTCTATCATCTACGCCATCTATAAAGGTGTAGC
ATCGCCCCCGGAGCTATCAGACAGTGATAGTGACGGGGAATCCAGCGATA
GCGAGGACGGGGACGGGGAATCCATCAATCATGCACCTGTCTCCGAGACA
TCGCCTCTCATTGAGAATGAGCCTGCGCCTTCATCAGCTGACAAAGAAAG
CAGACGAAGCAGAAGCCTCCCCTATCACATATTCCAGCTCATTCTCGGAT
TCATCTCGCTCTCAATGTCAGGATATATCCTCTCCCACAGCGCCGTCACC
ATCGCCGACTCCCTGCACCTCTCGGGATCTGTCTTCGGTCTGACCGTTGT
CTCGTTCGCCACCACTCTTCCAGAGAAGCTGGTTGCAATCATTAGTGGCT
CCCGCGGCCACGGCGGCATTATGGCTGCGACGACTGCAGGAAGCAACATT
TTCTTGCTGACGCTCTGTGTTGGTGTCGTTGCAGTGGCGGGGTACCAGGT
ACAAGAGGCAGATAATTTTGTGCTTTTTGAGCTGGTGGCCGTGTGGGTGT
CCTCTGGGGCATTTTGTGCTGTTATCTTTTTGGGACTGGGGAGGAGTGCA
GGTGTAGTTCTCTTAGTTGCCTACCTCGTGTTCCTTTGCCTGGAGTTTAC
CGTTTACCGGCGCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004302KJC3_004302Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004302-T1.utr5p1KJC3_004302-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004302-T1.exon1KJC3_004302-T1.exon1Aspergillus niger KJC3exon
KJC3_004302-T1.exon2KJC3_004302-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004302-T1.cdsKJC3_004302-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004302-T1KJC3_004302-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR004837
DBxrefPFAM:PF01699
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4477637..4478913 +
Powered by Drupal