You are here

Home

KJC3_004334-T1, KJC3_004334-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004334-T1
Unique NameKJC3_004334-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4580994..4582231-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004334-T1 ID=KJC3_004334-T1|Name=KJC3_004334-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1238bp|location=Sequence derived from alignment at ch3:4580994..4582231- (Aspergillus niger KJC3)
TCTCTATCTACTATCCAGATCTCATTATCTACTACTCCACTTGACCTTTT
CATTCCAATAATCAAAATCTACTTCTAATTTCAGCCAATCCGTGTTAATC
CTCCATACCATCCCCTGACTATTCCAATTACACCTTCTTCTCTACCATCC
ACCATGCAGGCTGCCCAGCAGTCCTGGGGTACGTCCATCCCCAACCCCAT
CCCCACCCCCACTCCATCTCACAGCACTCTAACCCCATAACCACAGAATT
CGAAAATGCCGTCACTCTCATAGACCCCCACCGAGACGCGCTCTACAAAT
ACGATGAAGAGACACACAAAGCTCTTAGCGCTCAGCGCCCTTGGTCCAAA
GACCCACACTACTTCAAATCGATCCGAATCTCCGCCGTCGCACTCCTCAA
GATGGTAATGCACGCGCGGTCCGGCGGCTCCCTCGAAGTAATGGGCCTAA
TGCAAGGCTATGTCCTGCCCGAAACCTTCGTGGTAACCGACGCCTTCCGA
CTTCCCGTGGAGGGAACCGAAACGCGAGTCAACGCCCAAGACGAAGCCAA
CGAGTACATGGTCTCATACCTACAGTCATGCCGGGACGCAGGACGGATGG
AAAACGCAGTGGGCTGGTACCACAGTCATCCCGGGTACGGGTGCTGGTTA
TCGGGCATTGATGTGACGACGCAGGATATGCAGCAGCTCGGGGGACCGTT
TGTGGCGGTGGTGGTTGATCCAGAGAGGACGATCTCAGCAGGGAAGGTGG
ATATTGGGGCATTTAGGACGTTTCCGAAGGATTATACGCCGCCGAAAGGG
GAGGGGGGTAGTGGTGCTGGGGAGGATGACTATCAGACGGTGCCGTTGAA
CAAGGCGGAGGACTTTGGGGCACATGCGTCACATTATTATTCGCTGGAGG
TGTCGGTGTTTAAGAGTGCGTTGGATACGGAGATTCTGTCGTTGCTGTGG
AATAAGTATTGGGTTGCGACGTTGAGTCAGAGTCCGTTGTTTACGACGAG
GGATTATGGGAGTAAGCAGATGGTGGATTTGAGTCAGAAGATTAAGCGGG
CTACGAGGGGCGTGGAGAGTAGTGCTTCGCGAGGGAATCTGGCGCAGGTT
AAGGATCCGCAGTTGGAGAGGGTGGCGAGGGACGGGCAGCGGATTGTCTC
GGAAGAAGTGAAGGGTTTGTTGGCGGCGGAAGTGAAGATGAAGCTGTTTC
AAAATGTTGGGGAGGGGAATAGATCGGAGAAATCATGA
back to top

Coding sequence (CDS) from alignment at ch3:4580994..4582231-

>KJC3_004334-T1 ID=KJC3_004334-T1|Name=KJC3_004334-T1|organism=Aspergillus niger KJC3|type=CDS|length=2034bp|location=Sequence derived from alignment at ch3:4580994..4582231- (Aspergillus niger KJC3)
AATTCGAAAATGCCGTCACTCTCATAGACCCCCACCGAGACGCGCTCTAC
AAATACGATGAAGAGACACACAAAGCTCTTAGCGCTCAGCGCCCTTGGTC
CAAAGACCCACACTACTTCAAATCGATCCGAATCTCCGCCGTCGCACTCC
TCAAGATGGTAATGCACGCGCGGTCCGGCGGCTCCCTCGAAGTAATGGGC
CTAATGCAAGGCTATGTCCTGCCCGAAACCTTCGTGGTAACCGACGCCTT
CCGACTTCCCGTGGAGGGAACCGAAACGCGAGTCAACGCCCAAGACGAAG
CCAACGAGTACATGGTCTCATACCTACAGTCATGCCGGGACGCAGGACGG
ATGGAAAACGCAGTGGGCTGGTACCACAGTCATCCCGGGTACGGGTGCTG
GTTATCGGGCATTGATGTGACGACGCAGGATATGCAGCAGCTCGGGGGAC
CGTTTGTGGCGGTGGTGGTTGATCCAGAGAGGACGATCTCAGCAGGGAAG
GTGGATATTGGGGCATTTAGGACGTTTCCGAAGGATTATACGCCGCCGAA
AGGGGAGGGGGGTAGTGGTGCTGGGGAGGATGACTATCAGACGGTGCCGT
TGAACAAGGCGGAGGACTTTGGGGCACATGCGTCACATTATTATTCGCTG
GAGGTGTCGGTGTTTAAGAGTGCGTTGGATACGGAGATTCTGTCGTTGCT
GTGGAATAAGTATTGGGTTGCGACGTTGAGTCAGAGTCCGTTGTTTACGA
CGAGGGATTATGGGAGTAAGCAGATGGTGGATTTGAGTCAGAAGATTAAG
CGGGCTACGAGGGGCGTGGAGAGTAGTGCTTCGCGAGGGAATCTGGCGCA
GGTTAAGGATCCGCAGTTGGAGAGGGTGGCGAGGGACGGGCAGCGGATTG
TCTCGGAAGAAGTGAAGGGTTTGTTGGCGGCGGAAGTGAAGATGAAGCTG
TTTCAAAATGTTGGGGAGGGGAATAGATCGGAGAAATCATGAATGCAGGC
TGCCCAGCAGTCCTGGGAATTCGAAAATGCCGTCACTCTCATAGACCCCC
ACCGAGACGCGCTCTACAAATACGATGAAGAGACACACAAAGCTCTTAGC
GCTCAGCGCCCTTGGTCCAAAGACCCACACTACTTCAAATCGATCCGAAT
CTCCGCCGTCGCACTCCTCAAGATGGTAATGCACGCGCGGTCCGGCGGCT
CCCTCGAAGTAATGGGCCTAATGCAAGGCTATGTCCTGCCCGAAACCTTC
GTGGTAACCGACGCCTTCCGACTTCCCGTGGAGGGAACCGAAACGCGAGT
CAACGCCCAAGACGAAGCCAACGAGTACATGGTCTCATACCTACAGTCAT
GCCGGGACGCAGGACGGATGGAAAACGCAGTGGGCTGGTACCACAGTCAT
CCCGGGTACGGGTGCTGGTTATCGGGCATTGATGTGACGACGCAGGATAT
GCAGCAGCTCGGGGGACCGTTTGTGGCGGTGGTGGTTGATCCAGAGAGGA
CGATCTCAGCAGGGAAGGTGGATATTGGGGCATTTAGGACGTTTCCGAAG
GATTATACGCCGCCGAAAGGGGAGGGGGGTAGTGGTGCTGGGGAGGATGA
CTATCAGACGGTGCCGTTGAACAAGGCGGAGGACTTTGGGGCACATGCGT
CACATTATTATTCGCTGGAGGTGTCGGTGTTTAAGAGTGCGTTGGATACG
GAGATTCTGTCGTTGCTGTGGAATAAGTATTGGGTTGCGACGTTGAGTCA
GAGTCCGTTGTTTACGACGAGGGATTATGGGAGTAAGCAGATGGTGGATT
TGAGTCAGAAGATTAAGCGGGCTACGAGGGGCGTGGAGAGTAGTGCTTCG
CGAGGGAATCTGGCGCAGGTTAAGGATCCGCAGTTGGAGAGGGTGGCGAG
GGACGGGCAGCGGATTGTCTCGGAAGAAGTGAAGGGTTTGTTGGCGGCGG
AAGTGAAGATGAAGCTGTTTCAAAATGTTGGGGAGGGGAATAGATCGGAG
AAATCATGAATGCAGGCTGCCCAGCAGTCCTGGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CSN5KJC3_004334Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004334-T1KJC3_004334-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004334-T1.cdsKJC3_004334-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004334-T1.exon2KJC3_004334-T1.exon2Aspergillus niger KJC3exon
KJC3_004334-T1.exon1KJC3_004334-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004334-T1.utr5p1KJC3_004334-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263RDD
NoteMEROPS:MER0122119
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR040961
DBxrefInterPro:IPR000555
DBxrefPFAM:PF01398
DBxrefPFAM:PF18323
Productproteasome regulatory particle subunit RPN11
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4580994..4582231 -
Powered by Drupal