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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4790063..4791788+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004374-T1 ID=KJC3_004374-T1|Name=KJC3_004374-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1726bp|location=Sequence derived from alignment at ch3:4790063..4791788+ (Aspergillus niger KJC3)
ATTTGGTGTAGTTGACACGCACCCCAATTTCCGATAGATGTGACGCTTAG
ACGGACTTATGTTGACCTTATGGACTCTCCCCATCTATTAAGCTCCATTA
GTATCAAGGACTATCTTATCCAACTGCCACATTCCCTGATAATTCTAGAT
GGGTTTCATGGGTTTTTTTGGGTCCGACTGGGTTTTGGGTACCCGCCCAT
ACCCATTCGTACGGCGACGCGGTCTGACGCGCCACTAATTCGATATATCC
AAAATCCATAGTGAGGAAAAAGAAAAGAAAAAACCAAAGGCGCGAGACAA
GAACCAGCTCATCATCCTCTAAAACTGATAATCTTTTTCTAAGCTATCCA
TATTCATTGAGTTGGGACAGCAAAAACCGCCAGCCATTTATCATGACCTC
ATCCAGTTCTACTTCAGCGAGGCTTATGTCCTTTCCATTTAGCTCTCTGA
CGCCAATTGAGGCGCCCTCAGATTCTATTCCTTCGTCCGATTTTCCCTCC
TCGGTATGTTGTGGCTCTATCGTTCGAGCCTATCGATACCCTCAAGACCT
TGGAGATAGACTGACCTGGACCGAAGCCCTTTCTTAGTCCAAGACGGAGC
CATATTTTCTCTCCGGGTGATCCTCCGACTAGCCTTAAGTGCATCGGTCC
TGACCGGAAAAAGAAATGGATTTTATACGACGCGGATTATGAGAGCGATT
TTTACTCATGGTGGTTGCAGACCGAGTACGGGAGACAGCTGAACGGAAAT
GGCAGATCTAAGATCAGGTGGTCAATCGAGACGCGCTTCGCTGATGTTTG
GAATTACTTTGATCAGGTGGCGGAGATACATACAGGTCGCCCAAAGGTTA
TCTGCAAGTCCTGTCTGACCTTACTGGATCATCCGCATCACAAGTCCCAC
GGCACAAGCGCTATGGGAAGACACCAGAAATCAAGTAGCTGCCGAAAAGG
AAAAAAACGGATAGCCCAGCAGACATTCATTGAAGACTCCATCCAACAGC
CTGCAGCAACTACAATAAGTAGGGTTCGGTTTACGAAGGATCAACTGGAA
GAGCAGCTTTTAATGACCATAACAAGCCTGCGGCTCCCTTTCCAGGTGGT
AGAGAATAGTGCATTCCAACAACTATTGTATCTGATCCACTCTGGTACTG
ATCGATTAGAGCTCCCGTCTGCGAAAACGCTTCGTCGCCGCTTGCGTGAT
GCTGTGGCTGAACAACATACCTCCCCACTGAACGATTTACTTGAGGGCGC
TAAAGTATCACTCGCTTTAGATTGTTGGACCAGCCCGTTTCAGCAGGCAT
TTATGGCAATTACAGCCTACTTATCGACAGTGATTGGAATTATCGAGAAC
TTCTTCTTGGCTTTGAGCCATTACACGGTCCCCATTCAGGGAGCACTGCA
CATGACCTGTAAAACGTCACGTGATGCTAGAATGCAGCCTTGCCTAGTAG
GGAGTAGGTGCTCCAACAAGATGGGTACCCGTCCCGACACATCAAAGGAC
CGGAAATGAGGTCAGGCTTACCGCAACGTTCCACCACCTAAACTTCTTTT
CTCTCTTAAGAGGGCTACTACTGGGAACCAGGCTGCATACATTCCACTTG
GTCCGCCAGGCAGGATATCCGAGCTAAGGAGAGACGGGGAGAGGGATATC
CGGACGTCTGGATTGCCGACGAACTGTTGGATCCCATGCACTCGGGGTGA
TATTAGTACACGAAAGAGATTGTCGG back to topCoding sequence (CDS) from alignment at ch3:4790063..4791788+ >KJC3_004374-T1 ID=KJC3_004374-T1|Name=KJC3_004374-T1|organism=Aspergillus niger KJC3|type=CDS|length=2088bp|location=Sequence derived from alignment at ch3:4790063..4791788+ (Aspergillus niger KJC3)
ATGACCTCATCCAGTTCTACTTCAGCGAGGCTTATGTCCTTTCCATTTAG
CTCTCTGACGCCAATTGAGGCGCCCTCAGATTCTATTCCTTCGTCCGATT
TTCCCTCCTCGCCCTTTCTTAGTCCAAGACGGAGCCATATTTTCTCTCCG
GGTGATCCTCCGACTAGCCTTAAGTGCATCGGTCCTGACCGGAAAAAGAA
ATGGATTTTATACGACGCGGATTATGAGAGCGATTTTTACTCATGGTGGT
TGCAGACCGAGTACGGGAGACAGCTGAACGGAAATGGCAGATCTAAGATC
AGGTGGTCAATCGAGACGCGCTTCGCTGATGTTTGGAATTACTTTGATCA
GGTGGCGGAGATACATACAGGTCGCCCAAAGGTTATCTGCAAGTCCTGTC
TGACCTTACTGGATCATCCGCATCACAAGTCCCACGGCACAAGCGCTATG
GGAAGACACCAGAAATCAAGTAGCTGCCGAAAAGGAAAAAAACGGATAGC
CCAGCAGACATTCATTGAAGACTCCATCCAACAGCCTGCAGCAACTACAA
TAAGTAGGGTTCGGTTTACGAAGGATCAACTGGAAGAGCAGCTTTTAATG
ACCATAACAAGCCTGCGGCTCCCTTTCCAGGTGGTAGAGAATAGTGCATT
CCAACAACTATTGTATCTGATCCACTCTGGTACTGATCGATTAGAGCTCC
CGTCTGCGAAAACGCTTCGTCGCCGCTTGCGTGATGCTGTGGCTGAACAA
CATACCTCCCCACTGAACGATTTACTTGAGGGCGCTAAAGTATCACTCGC
TTTAGATTGTTGGACCAGCCCGTTTCAGCAGGCATTTATGGCAATTACAG
CCTACTTATCGACAGTGATTGGAATTATCGAGAACTTCTTCTTGGCTTTG
AGCCATTACACGGTCCCCATTCAGGGAGCACTGCACATGACCTGTAAAAC
GTCACGTGATGCTAGAATGCAGCCTTGCCTAGTAGGGAGTAGGTGCTCCA
ACAAGATGGGTACCCGTCCCGACACATCAAAGGACCGGAAATGAATGACC
TCATCCAGTTCTACTTCAGCGAGGCTTATGTCCTTTCCATTTAGCTCTCT
GACGCCAATTGAGGCGCCCTCAGATTCTATTCCTTCGTCCGATTTTCCCT
CCTCGCCCTTTCTTAGTCCAAGACGGAGCCATATTTTCTCTCCGGGTGAT
CCTCCGACTAGCCTTAAGTGCATCGGTCCTGACCGGAAAAAGAAATGGAT
TTTATACGACGCGGATTATGAGAGCGATTTTTACTCATGGTGGTTGCAGA
CCGAGTACGGGAGACAGCTGAACGGAAATGGCAGATCTAAGATCAGGTGG
TCAATCGAGACGCGCTTCGCTGATGTTTGGAATTACTTTGATCAGGTGGC
GGAGATACATACAGGTCGCCCAAAGGTTATCTGCAAGTCCTGTCTGACCT
TACTGGATCATCCGCATCACAAGTCCCACGGCACAAGCGCTATGGGAAGA
CACCAGAAATCAAGTAGCTGCCGAAAAGGAAAAAAACGGATAGCCCAGCA
GACATTCATTGAAGACTCCATCCAACAGCCTGCAGCAACTACAATAAGTA
GGGTTCGGTTTACGAAGGATCAACTGGAAGAGCAGCTTTTAATGACCATA
ACAAGCCTGCGGCTCCCTTTCCAGGTGGTAGAGAATAGTGCATTCCAACA
ACTATTGTATCTGATCCACTCTGGTACTGATCGATTAGAGCTCCCGTCTG
CGAAAACGCTTCGTCGCCGCTTGCGTGATGCTGTGGCTGAACAACATACC
TCCCCACTGAACGATTTACTTGAGGGCGCTAAAGTATCACTCGCTTTAGA
TTGTTGGACCAGCCCGTTTCAGCAGGCATTTATGGCAATTACAGCCTACT
TATCGACAGTGATTGGAATTATCGAGAACTTCTTCTTGGCTTTGAGCCAT
TACACGGTCCCCATTCAGGGAGCACTGCACATGACCTGTAAAACGTCACG
TGATGCTAGAATGCAGCCTTGCCTAGTAGGGAGTAGGTGCTCCAACAAGA
TGGGTACCCGTCCCGACACATCAAAGGACCGGAAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004374-T1.utr5p1 | KJC3_004374-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004374-T1.utr3p1 | KJC3_004374-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR003656 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4790063..4791788 + |
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