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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5182604..5184309- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004410-T1 ID=KJC3_004410-T1|Name=KJC3_004410-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1706bp|location=Sequence derived from alignment at ch3:5182604..5184309- (Aspergillus niger KJC3)
CTGGTACCGGATAGCTTTCAAAATGGTTAATCGTCTAAAGAAACAACAAA
AGTCGAAAGAAGCCTCTAAGAAAATTGCGGATGTGCCAGTAGTCCTCTTT
ATATCCTCTAATGTTGAAGACAGGGGAAGATCCCCAATGAAGAAGTTGGA
GACATTTCATTGCACTCTGGGCGATCGCTTTGGGCGAGATCGTGAGTTCT
ATTCAACTACCAAAGATGAGGATGGTATGACGCCGCTTCATTACGCAGCA
CGGTTATTGCCAACGGGTTCCATTTCATGGGTGGAACATGAGGAGGAGCG
GCAGAAATGGAACTTGCTTCTAAAAGGCTTTAATCAGGATGACCTGAACG
TGCAGGATGAAGATGGTCGTACCCCACTCTCTCATGCGGCAGAGGTTGGA
AGCGCATGGGTTGTGGATAAGCTGATCAAAACTGGAGCTGATCTCTACCA
ATGCGACCAAAACGGACGATCGCCCTTATCTTGGGCAGCGCAATCCGGAG
AAAGAGAATCGATGGAGATACTGAGTTGGAATGCCGGTGTCTTTGATGAC
AAGGATACCGAGGCTGGACGCCCTGTCATTATTTTCTACAACGGGAGCCT
GAGTCAGCTGAGGATACGATTTCAGGATTCTTCCACTTATCTGGGACAGA
AGCCATTCCCAAGAGGTCGGACACCTTGCCTGGCGCAAGGTGTTCTCGAG
TATTAGCGTGTCGACGCGAGTGGCAGCCGACTATATCAGCACGTCCTTGT
TATCTACGCCTACTGCTTGTGGCCTCACTTTGCTGTCGCGTGCTGTCCAG
CTTGATAGAATTCTGATCGTCGCAATACTCCTCACCATCGAGGATATCGA
CATAGGCGTGCCAGACGGGGATGGTAAAACGCCACTCTGGAGAGCGATAG
AAGCCGGAAATCGCGAAATCACCGAGTTACTATGGAATTATGATGATGTG
ACTTTGAGGCTACTAGCAACGAGTGCTCAAGCCCGATCTGACCTGCTACC
TATCGTGAAGCTTTTTCTTCGATGGCGTGCCGGAATTGATTGGTTGTGGG
AATTGCTTGATTGTATTCTGCGCTGGTGGTCAAATGCTCTGACTTAAGTG
GCTGCGGACATCGCCGTAATGGTCATGGCCATTGACGGTGAGAATATCAC
ATCTGGTCAGCTCATTCATGATGTGTCTTTGTTGCTCAGACCAAGCTAAG
CGGTAATAATAGGCTTACGCGAGCGATTTGGTATTGTTGTTGTTCGGAGG
AAGATTGATTGTTCCTATTTCCGTCGACAACCTAATGGCTTTATATACAA
AACGGATATCAGGTTGATTGGAAACCAACCTGATTGTATCTGGAATGCAT
TCCTCATACAAAGCCCTATTATTTGATCTAGCTTTGAATTACTGTACAAC
AGATCTTGCTCGGTTCAAGTTTGGGCTTTCGGTGCTCTCTGCAAGAAATC
GCGGGGTGATTTCCAGCTGTCAGCTATCTAGGATAAGCTGAATTCAGCAG
AGTGAGACTTACCATGCAGATGTAATTTTGCAGGTGAATATGACGGGTAT
TCTCCACGTCTTGGTCACAACGTAGGAAGGTGGTCACCAGATTATCGAAA
ACCAGAGTTGTTTCCCCCACCATGGTCGCCGTTGGATGCACATCAGATCA
GATGGGTTTTGGAATAAAACAAAGATATGAGAACGTCTAGAGCACCTATA
ACTAGT back to topCoding sequence (CDS) from alignment at ch3:5182604..5184309- >KJC3_004410-T1 ID=KJC3_004410-T1|Name=KJC3_004410-T1|organism=Aspergillus niger KJC3|type=CDS|length=684bp|location=Sequence derived from alignment at ch3:5182604..5184309- (Aspergillus niger KJC3)
ATGGTTAATCGTCTAAAGAAACAACAAAAGTCGAAAGAAGCCTCTAAGAA
AATTGCGGATGTGCCAGTAGTCCTCTTTATATCCTCTAATGTTGAAGACA
GGGGAAGATCCCCAATGAAGAAGTTGGAGACATTTCATTGCACTCTGGGC
GATCGCTTTGGGCGAGATCGTGAGTTCTATTCAACTACCAAAGATGAGGA
TGGTATGACGCCGCTTCATTACGCAGCACGGTTATTGCCAACGGGTTCCA
TTTCATGGGTGGAACATGAGGAGGAGCGGCAGAAATGGAACTTGCTTCTA
AAAGGCTTTAATCAGGATGACCTGAACGTGCAGGATGAAGATGGTCGTAC
CCCACTCTCTCATGCGGCAGAGGTTGGAAGCGCATGGGTTGTGGATAAGC
TGATCAAAACTGGAGCTGATCTCTACCAATGCGACCAAAACGGACGATCG
CCCTTATCTTGGGCAGCGCAATCCGGAGAAAGAGAATCGATGGAGATACT
GAGTTGGAATGCCGGTGTCTTTGATGACAAGGATACCGAGGCTGGACGCC
CTGTCATTATTTTCTACAACGGGAGCCTGAGTCAGCTGAGGATACGATTT
CAGGATTCTTCCACTTATCTGGGACAGAAGCCATTCCCAAGAGGTCGGAC
ACCTTGCCTGGCGCAAGGTGTTCTCGAGTATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004410-T1.utr3p1 | KJC3_004410-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004410-T1.utr5p1 | KJC3_004410-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5182604..5184309 - |
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