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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5229193..5231047- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004420-T1 ID=KJC3_004420-T1|Name=KJC3_004420-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1855bp|location=Sequence derived from alignment at ch3:5229193..5231047- (Aspergillus niger KJC3)
GTCGGGGACATTGTCGGGGGTCATTAGTCAGCAGTCTTGGCTGCGGAATA
TTTGCTTTCCGCAACGCGTCAGCGAGATCTTGCCGAGACACGATCGCAGG
GACGTGATTGTCTACATCCAGGCGGCGACATTGGTTTTTGCGGAAGATTT
CACAGAGCCGATCCAGGTTTTGGGAATCAAGATCCCGGGGCAACGGAGGA
TCGAAATGGATTTGATAGATACTGACTTTGGCTGTACCTAGGTATTTCAA
GCGCCGCTCCGTCGCCAGCCGGACCTCTTCCTCTGTAAAGAGAGCCCGCT
GCATTGCAAGGGCCGGAAATGGAAACAGGTATCAAGAGCGATGGCAAGGA
AGTCAGTATTTATGACTGAATGTATATATCTCCCATGCATCGTCCACTGC
GGTAGTACAGTGGCACTGCGGTGCTACCGCAGTTGCTTCAAACATGAAAC
GCAAGTTCCCCGCAGCGGCCTGAAACAGCAACCAACCCTAACTTAAAATC
ACGTCTCTCGCTCGCGTTCATTGCCACTTTGACCATACGTACTCAATCTC
TTCCAAGACCGTCATGGCCCCGGCTGATGGCAAGCGGGCCACCCAGTTCC
TGGCGGATGCGGTTCCTCTGCTTGAACAACCTCCCCCAGATCCTGCAGCT
GCAGTGCTCCCATTACCTGTCCCTAGACCTAAGCCTAATGGGACTATATC
ATCCAGCGCGCGTCTGACCAAAAGGCCTGCTGCTCCCTCGCCTGCAGGCC
CAAGCCACAAGATCATTCGAGGCCCACCACGAAGTTTGGCTCTTCCGGAG
GCCACGGGGTTGGGAAACAGTGTGGATTCTGATCTAGTTATACGGGAGGA
GCCTCCCTGGGACACTTTCAAAAAGTATTATGAATGTGACTTGGCTGGCA
CTGTTGCTGTATGTGTGCGATGTTCTGGTCGCCGTGCAGTCTGGGCGATT
CGTCAGTATCCCCACAAGGATACTGACAAAATCCTGACTATCCTTCGGTC
CACGCGCCATAAGAACGTGGACTCTGTTTGGGAATGCTTCCGCACCTCTG
ATGCTCTGTATACTCTCGGCAAATTCTATCCACTCACGCTAGATCATGTC
GTTGCCTGCAAGGCCTTTCCAGACCAGCCGCAGCTGGCTGCGATTATATC
TCAGGTCATTCAAGTTCACGCTGATATATCTGATTGCTAACTGTTTCCAG
TTTATTGATGGTTTGTCATATCTTGTCTCCCAGAATCTCCAGCATACGTC
CCTGGATTGTTCCAGCATACTCATGAGTCTCGAAGGGGAGATCCGAATCG
GTAATTCCACTACTTTAGCCCCGTGGGAAAGCAGCTCTGACCGGGATTTC
TAGCACGGATAGAGTTATGGGCTGTCCGGTCGTCGGAGGCGGACCAAGCA
GACGATTTGGCCTCCGTTGCGCGAGTAATGATGCAGCTCATGCAGAAATA
TGTTAAGGATGACGGAGCAGTTGGGATTGACAACCTCGATCGTTGGCGCA
ACTGCCCAGCTGCTATTGAATTCCTCTCAGCGACGACATCAGCCGGCTCA
TTGGGAGTTCTCAAAAAGGTTAGTTGTATCCTCGTTACATTCGAAAGCTG
CTCATTTATTTTTAGCAACGTCTCCTGACGGAAGTCCGTTGGTCTCGTAG
TGACCTCATTGGGATTGCATGGTTTGCTCTAATATCTGCACGTACATTCT
ATTCGTACGCACCTTAGTCAGATACAGAGATATAGACTACAATTGTGACT
AGATGAGCTGCTGTACACTAGAGACTGTTGATGCTTTTTATGTAGAACCA
TACAGATGCTCTTTCCGGGTTAGTTACAGCACACTAATCGCCCCTTTCTT
TCGGT back to topCoding sequence (CDS) from alignment at ch3:5229193..5231047- >KJC3_004420-T1 ID=KJC3_004420-T1|Name=KJC3_004420-T1|organism=Aspergillus niger KJC3|type=CDS|length=4032bp|location=Sequence derived from alignment at ch3:5229193..5231047- (Aspergillus niger KJC3)
CAACGTCTCCTGACGGAAGTCCGTTGGTCTCGTAGTGACCTCATTGGGAT
TGCATGGTTTGCTCTAATATCTGCACGTACATTCTATTCGTACGCACCTT
AGCACGGATAGAGTTATGGGCTGTCCGGTCGTCGGAGGCGGACCAAGCAG
ACGATTTGGCCTCCGTTGCGCGAGTAATGATGCAGCTCATGCAGAAATAT
GTTAAGGATGACGGAGCAGTTGGGATTGACAACCTCGATCGTTGGCGCAA
CTGCCCAGCTGCTATTGAATTCCTCTCAGCGACGACATCAGCCGGCTCAT
TGGGAGTTCTCAAAAAGTTTATTGATGGTTTGTCATATCTTGTCTCCCAG
AATCTCCAGCATACGTCCCTGGATTGTTCCAGCATACTCATGAGTCTCGA
AGGGGAGATCCGAATCGATGGCCCCGGCTGATGGCAAGCGGGCCACCCAG
TTCCTGGCGGATGCGGTTCCTCTGCTTGAACAACCTCCCCCAGATCCTGC
AGCTGCAGTGCTCCCATTACCTGTCCCTAGACCTAAGCCTAATGGGACTA
TATCATCCAGCGCGCGTCTGACCAAAAGGCCTGCTGCTCCCTCGCCTGCA
GGCCCAAGCCACAAGATCATTCGAGGCCCACCACGAAGTTTGGCTCTTCC
GGAGGCCACGGGGTTGGGAAACAGTGTGGATTCTGATCTAGTTATACGGG
AGGAGCCTCCCTGGGACACTTTCAAAAAGTATTATGAATGTGACTTGGCT
GGCACTGTTGCTGTATGTGTGCGATGTTCTGGTCGCCGTGCAGTCTGGGC
GATTCGTCAGTATCCCCACAAGGATACTGACAAAATCCTGACTATCCTTC
GGTCCACGCGCCATAAGAACGTGGACTCTGTTTGGGAATGCTTCCGCACC
TCTGATGCTCTGTATACTCTCGGCAAATTCTATCCACTCACGCTAGATCA
TGTCGTTGCCTGCAAGGCCTTTCCAGACCAGCCGCAGCTGGCTGCGATTA
TATCTCAGCAACGTCTCCTGACGGAAGTCCGTTGGTCTCGTAGTGACCTC
ATTGGGATTGCATGGTTTGCTCTAATATCTGCACGTACATTCTATTCGTA
CGCACCTTAGCACGGATAGAGTTATGGGCTGTCCGGTCGTCGGAGGCGGA
CCAAGCAGACGATTTGGCCTCCGTTGCGCGAGTAATGATGCAGCTCATGC
AGAAATATGTTAAGGATGACGGAGCAGTTGGGATTGACAACCTCGATCGT
TGGCGCAACTGCCCAGCTGCTATTGAATTCCTCTCAGCGACGACATCAGC
CGGCTCATTGGGAGTTCTCAAAAAGTTTATTGATGGTTTGTCATATCTTG
TCTCCCAGAATCTCCAGCATACGTCCCTGGATTGTTCCAGCATACTCATG
AGTCTCGAAGGGGAGATCCGAATCGATGGCCCCGGCTGATGGCAAGCGGG
CCACCCAGTTCCTGGCGGATGCGGTTCCTCTGCTTGAACAACCTCCCCCA
GATCCTGCAGCTGCAGTGCTCCCATTACCTGTCCCTAGACCTAAGCCTAA
TGGGACTATATCATCCAGCGCGCGTCTGACCAAAAGGCCTGCTGCTCCCT
CGCCTGCAGGCCCAAGCCACAAGATCATTCGAGGCCCACCACGAAGTTTG
GCTCTTCCGGAGGCCACGGGGTTGGGAAACAGTGTGGATTCTGATCTAGT
TATACGGGAGGAGCCTCCCTGGGACACTTTCAAAAAGTATTATGAATGTG
ACTTGGCTGGCACTGTTGCTGTATGTGTGCGATGTTCTGGTCGCCGTGCA
GTCTGGGCGATTCGTCAGTATCCCCACAAGGATACTGACAAAATCCTGAC
TATCCTTCGGTCCACGCGCCATAAGAACGTGGACTCTGTTTGGGAATGCT
TCCGCACCTCTGATGCTCTGTATACTCTCGGCAAATTCTATCCACTCACG
CTAGATCATGTCGTTGCCTGCAAGGCCTTTCCAGACCAGCCGCAGCTGGC
TGCGATTATATCTCAGCAACGTCTCCTGACGGAAGTCCGTTGGTCTCGTA
GTGACCTCATTGGGATTGCATGGTTTGCTCTAATATCTGCACGTACATTC
TATTCGTACGCACCTTAGCACGGATAGAGTTATGGGCTGTCCGGTCGTCG
GAGGCGGACCAAGCAGACGATTTGGCCTCCGTTGCGCGAGTAATGATGCA
GCTCATGCAGAAATATGTTAAGGATGACGGAGCAGTTGGGATTGACAACC
TCGATCGTTGGCGCAACTGCCCAGCTGCTATTGAATTCCTCTCAGCGACG
ACATCAGCCGGCTCATTGGGAGTTCTCAAAAAGTTTATTGATGGTTTGTC
ATATCTTGTCTCCCAGAATCTCCAGCATACGTCCCTGGATTGTTCCAGCA
TACTCATGAGTCTCGAAGGGGAGATCCGAATCGATGGCCCCGGCTGATGG
CAAGCGGGCCACCCAGTTCCTGGCGGATGCGGTTCCTCTGCTTGAACAAC
CTCCCCCAGATCCTGCAGCTGCAGTGCTCCCATTACCTGTCCCTAGACCT
AAGCCTAATGGGACTATATCATCCAGCGCGCGTCTGACCAAAAGGCCTGC
TGCTCCCTCGCCTGCAGGCCCAAGCCACAAGATCATTCGAGGCCCACCAC
GAAGTTTGGCTCTTCCGGAGGCCACGGGGTTGGGAAACAGTGTGGATTCT
GATCTAGTTATACGGGAGGAGCCTCCCTGGGACACTTTCAAAAAGTATTA
TGAATGTGACTTGGCTGGCACTGTTGCTGTATGTGTGCGATGTTCTGGTC
GCCGTGCAGTCTGGGCGATTCGTCAGTATCCCCACAAGGATACTGACAAA
ATCCTGACTATCCTTCGGTCCACGCGCCATAAGAACGTGGACTCTGTTTG
GGAATGCTTCCGCACCTCTGATGCTCTGTATACTCTCGGCAAATTCTATC
CACTCACGCTAGATCATGTCGTTGCCTGCAAGGCCTTTCCAGACCAGCCG
CAGCTGGCTGCGATTATATCTCAGCAACGTCTCCTGACGGAAGTCCGTTG
GTCTCGTAGTGACCTCATTGGGATTGCATGGTTTGCTCTAATATCTGCAC
GTACATTCTATTCGTACGCACCTTAGCACGGATAGAGTTATGGGCTGTCC
GGTCGTCGGAGGCGGACCAAGCAGACGATTTGGCCTCCGTTGCGCGAGTA
ATGATGCAGCTCATGCAGAAATATGTTAAGGATGACGGAGCAGTTGGGAT
TGACAACCTCGATCGTTGGCGCAACTGCCCAGCTGCTATTGAATTCCTCT
CAGCGACGACATCAGCCGGCTCATTGGGAGTTCTCAAAAAGTTTATTGAT
GGTTTGTCATATCTTGTCTCCCAGAATCTCCAGCATACGTCCCTGGATTG
TTCCAGCATACTCATGAGTCTCGAAGGGGAGATCCGAATCGATGGCCCCG
GCTGATGGCAAGCGGGCCACCCAGTTCCTGGCGGATGCGGTTCCTCTGCT
TGAACAACCTCCCCCAGATCCTGCAGCTGCAGTGCTCCCATTACCTGTCC
CTAGACCTAAGCCTAATGGGACTATATCATCCAGCGCGCGTCTGACCAAA
AGGCCTGCTGCTCCCTCGCCTGCAGGCCCAAGCCACAAGATCATTCGAGG
CCCACCACGAAGTTTGGCTCTTCCGGAGGCCACGGGGTTGGGAAACAGTG
TGGATTCTGATCTAGTTATACGGGAGGAGCCTCCCTGGGACACTTTCAAA
AAGTATTATGAATGTGACTTGGCTGGCACTGTTGCTGTATGTGTGCGATG
TTCTGGTCGCCGTGCAGTCTGGGCGATTCGTCAGTATCCCCACAAGGATA
CTGACAAAATCCTGACTATCCTTCGGTCCACGCGCCATAAGAACGTGGAC
TCTGTTTGGGAATGCTTCCGCACCTCTGATGCTCTGTATACTCTCGGCAA
ATTCTATCCACTCACGCTAGATCATGTCGTTGCCTGCAAGGCCTTTCCAG
ACCAGCCGCAGCTGGCTGCGATTATATCTCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004420-T1.utr3p1 | KJC3_004420-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004420-T1.utr5p1 | KJC3_004420-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011009 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5229193..5231047 - |
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