|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5290237..5293978- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004440-T1 ID=KJC3_004440-T1|Name=KJC3_004440-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3742bp|location=Sequence derived from alignment at ch3:5290237..5293978- (Aspergillus niger KJC3)
ACAAAGTCAATTGTCGGTTCGCCGCGCAGGGGAGATTGAGACACGGGGAA
GTTTACCGCTCAGAACTTCAGCGGTCACCATGTCTTTCCCTTCCCCAGGA
CAGCCAAGACATGTCTGCCAGAGCCCCAGATGCCCAGCAATTGACTCCCC
TCAAGCCGTGCGGAGGCGCTGCCAGTATCACAGCATTCTGTGACTAATTA
CCATCTCCAACTTCGACTCAATCACACCGTGCAAGTGGGGTTCGTTGCCG
CGTGTCCAACCAAAGAAATGGCTCGAGACGGGTGGAGAAGCACGAGCAAG
TGGTGCGAACGTGGTTCCCGATGTCGCGATGCAGGTACCCAGCGGCGAAT
AAAACATTTTTCTCCGCGCGTGGCCGGAGTGTGGCGAGCTGTCGTTGTCG
CCTACAAGAACTCTGGGGGAACCTCTCTTCTCTGGTGTGTCACCACTTCT
ACAACTTCGCATCTTCCCCGCCAAGATGCACCAGTCCACCACTGTCACCA
TGGAGGACGAGAAGATCCGCGAGTACGGATACGGTGGTCCTGAGGTGGTC
AACTACGACGATGAAGCTCCCCCGCTCAAAGGTGAGCTGGAGCTCAATGT
CGGTGGCCGTGGTGCTACCCAACGGCGGCTGAAGAACTACCAGGTCAGCA
TGATCGGGTTCTGTGGTGGAATTGGAACCGGTCTCTTCGTGGGAGCAGGC
TCTGCATATGCAGAAGCAGGTCCCGCTGGTTTGCTGCTGGCCTACATTGT
TATTGGATTCGTGCTGTGGTGTGTCATGCAGAGTATTGCGGAACTGGCTA
CCTTGCTGCCCACAGCGGGATCATTCCCTCACTGGGCCACTCGCTTCATC
GATCCGGCCGTCGGCTTTTCCCTCGCTATCACATACGGTTACTGTTATAC
AATTGCGATTGCTTCAGAGGTGTCCGCTTCTGCGGTCATTGTTGGCTATT
GGACAGACTTGACACCGGCGGTGGTTATTACGGTCGGGCTGGTGCTGATC
TTGGCTATCAACCTGATGAGCGTACGCTTTTATGGTGAAAGTGAGGTCAT
CGCAGGCGCTATTAAGGTGTTGTGCTTTGTCGGATTGGTCATTGTCGCTA
TCGTCATCACCTCAGGTGGCGGTCCCAATCACCAAACCATCGGATTCCGC
TACTGGCACAATCCCGGAGCCTGGACGAACTACAATGGCATCACTGGCCC
GACTGGACACTTCCTTGGATTTTTGTCTGCCTTCGTCAATGCGTCCTTCA
GTTTCGTTGGTGTCGAAACAGTCGTCATCACTGCCGCCGAATCGGTCGAC
CCGCACTACTCCATCCCCAAAGCTGCCCGTCGCGTGACATACCGAATTGC
GTTCTTCTACATTCTCGGTGCACTGCTCATTGGAATCATTGTCAGCCCTA
CAAACCCAGATCTTGTTTCTGGTTCCGACAACGCCAACAGCTCCCCTTGG
GTCATTGCTATCAAGCAGGCCGGAATTAGCGCCTTACCGTCTGTGGTCAA
CGCTTGTATCCTTATATCGGCCTGGTCTGCAGGCAATTCGTATTGCTGGG
TGGGATCGCGCATGATTGTGGCCATGACGACCGACCGTCAGTTACCACAG
GTGTTTGGCCGGGTTAACAAGATGGGCGTGCCGTACGTTGCCGTCATCAC
CTCCTGGCTTTTTGGGCCGTTGGCATATCTGAGTTAGTAATCATCGATCT
CCTAATGTGTTTCCATCTCGATTAACGGAATTTCTAGGTCTTGGATCCGG
TGGTCCGGCACAGGCTTTCAGCTGGCTTCTTAATCTGAGCACCATTGCTG
GACTGATCGCGTGGGCGACGCTGTCCTTCTGCTACATTCGCTTCTATTCG
GCCATGAAAGCGCAGGGCGTCAGCCGGGACACTTTGCCCTGGCAGTCGCC
TTTCCAGCCATACACGGCGTGGGTGGGTTTCATTGGCTCAACTATCATCA
CCCTGGTGGCGGGTTTCCCTGTGTTCCTCAAGGGTAACTGGTCCACTTCG
GACTTCTTTGCCTCATATGTGGGCATTCCTATCTTCATTGTGCCGATTAT
CCTCTGGAAGGTGTTCAAGCGCACGAAGGTGAGCAGCCTTATCTTCACCC
TGGTATCGAACGATGTTGCTAACTGATGATGCAGTTTGTTCGCAGCTCCA
ATATCGACCTCTGGTCCGGTCGGCTGCAGGAGGGCGAGATTGTTATCCGA
GAGGGCGGGCCCAAGACCCGTGTGAGACGCTTCGTGGACTGGTTCTTCTA
AGTGTGGACTGGTTCCAAATTCAACTTTCTTTCTGTACATTTGTGCATCT
TTCGGCGGAGATACCCATTATGTTTTCCATGCAATTTCAACAATTTGCAA
CCCGTCAAAAAAGTCTTATACTTTCTATATACATATTATACAAGTTTTAA
TTTATTGCGGGCGGAGCTGTTCGCGAAGCCTCTTGATATCATTGAACGAA
GCCTTGCAGCAACCGCCAACAAGGATAGAGCTGAACTGGCCAGTCGCGCT
AGCGTCATTGACCACCTGTGCCAATTGCACCTCCCAGGGTCGCTAATCAG
TCAGCACATATATCTCTTCAATATCACAACCAACATCCAAAAGGTTCACT
TACCGAATCAGCCGCACCACTCTTATCTTGAACCTTTTCCCACGTCTGCG
TAGCAGTATTATAAACCTCCCCCTGCGTGCCATCCGGATACAGCACCAAC
GCAGGCCTCTCCTGAATACGCCCATCCCTCAACAACCTCTCCACAGCATC
CCCAAACAATTTCACCAACCGGGGCAACTTATGAAGCTTCGTACAATTAA
TCCCAATTCCCCACGGCGTAGCACCCCCCTCAATCGGCAACAACGCCGCC
TCCACCACCTCATCAACGGTACTTCCATCCGGCAGGGTATCCTTATCCTC
AATCGGAAAAACACAAGCCACCCAAAACGGGATCCCCTCACAAAACCTAG
AAGATCCCACAGCCCTCCTCACAGCCCTCACCTCATCAATCCTCGGCACC
GTCTCCATAGCAATATACTTCACCCTCTCTCCCAACCTCATCCCCTCCAT
CGCCTCATCATTAAAAAGTCCCAACCGGTCCGTATGCCACCTCCACAGCT
TCTCCTCGGTATCATGTTCCCCGTCATACTTCCCACTATACTCTTGTCCC
GGGATCATGCACGCGCCATAGGGACCTAGACTTAGCGCCACGGAGGCGGA
AGTATTCTGCACAGCTTGTCCGGCGACGTCGAGGGCGGTGCGAAGGTAAC
CGGCGATACTCTCGCGGGGGATTCCCGTCGGGTGGGAAGGGGTTTTTGTG
CGCTGGAAGCCCTCCGGAGAGACTTGGTAGGTGGCAGTTAGGAGGACGTC
GACGGCGGCGGTGGTGGTGAAGTCGCGTTGGCAGGAGAGGAGGGTCGAGG
GGTCGGAGATCATTAGGTGCGAGGACCAGAGAGGGGTGGTGCTGCTGCTG
AAGGTAATGTTGTAGTGGTCTTGGAGGGAGGTGCCGAGACCGCCGTCGAG
AATGAGGATGGGGGTTTTTGCCATTTTGAGGTGTATTGATGAGGTGGATT
GAGTGGGAAATTGAAGATGAAAAAGGGGAGTGATGTGAAGAAGAAGAGGG
AATATTTCTTCAGTTTCTGGTGGTATTGCGACAACGGAATGGCTTTCTGC
CCCGCAATGTGGGGTTGTTTGCGTAGGTTGCAATTCGCGATCGGGCTGGA
ATGGGATGGGATGGGCTTATCAGACTACCATCATCATTTACA back to topCoding sequence (CDS) from alignment at ch3:5290237..5293978- >KJC3_004440-T1 ID=KJC3_004440-T1|Name=KJC3_004440-T1|organism=Aspergillus niger KJC3|type=CDS|length=4995bp|location=Sequence derived from alignment at ch3:5290237..5293978- (Aspergillus niger KJC3)
TTTGTTCGCAGCTCCAATATCGACCTCTGGTCCGGTCGGCTGCAGGAGGG
CGAGATTGTTATCCGAGAGGGCGGGCCCAAGACCCGTGTGAGACGCTTCG
TGGACTGGTTCTTCTAAGTCTTGGATCCGGTGGTCCGGCACAGGCTTTCA
GCTGGCTTCTTAATCTGAGCACCATTGCTGGACTGATCGCGTGGGCGACG
CTGTCCTTCTGCTACATTCGCTTCTATTCGGCCATGAAAGCGCAGGGCGT
CAGCCGGGACACTTTGCCCTGGCAGTCGCCTTTCCAGCCATACACGGCGT
GGGTGGGTTTCATTGGCTCAACTATCATCACCCTGGTGGCGGGTTTCCCT
GTGTTCCTCAAGGGTAACTGGTCCACTTCGGACTTCTTTGCCTCATATGT
GGGCATTCCTATCTTCATTGTGCCGATTATCCTCTGGAAGGTGTTCAAGC
GCACGAAGATGCACCAGTCCACCACTGTCACCATGGAGGACGAGAAGATC
CGCGAGTACGGATACGGTGGTCCTGAGGTGGTCAACTACGACGATGAAGC
TCCCCCGCTCAAAGGTGAGCTGGAGCTCAATGTCGGTGGCCGTGGTGCTA
CCCAACGGCGGCTGAAGAACTACCAGGTCAGCATGATCGGGTTCTGTGGT
GGAATTGGAACCGGTCTCTTCGTGGGAGCAGGCTCTGCATATGCAGAAGC
AGGTCCCGCTGGTTTGCTGCTGGCCTACATTGTTATTGGATTCGTGCTGT
GGTGTGTCATGCAGAGTATTGCGGAACTGGCTACCTTGCTGCCCACAGCG
GGATCATTCCCTCACTGGGCCACTCGCTTCATCGATCCGGCCGTCGGCTT
TTCCCTCGCTATCACATACGGTTACTGTTATACAATTGCGATTGCTTCAG
AGGTGTCCGCTTCTGCGGTCATTGTTGGCTATTGGACAGACTTGACACCG
GCGGTGGTTATTACGGTCGGGCTGGTGCTGATCTTGGCTATCAACCTGAT
GAGCGTACGCTTTTATGGTGAAAGTGAGGTCATCGCAGGCGCTATTAAGG
TGTTGTGCTTTGTCGGATTGGTCATTGTCGCTATCGTCATCACCTCAGGT
GGCGGTCCCAATCACCAAACCATCGGATTCCGCTACTGGCACAATCCCGG
AGCCTGGACGAACTACAATGGCATCACTGGCCCGACTGGACACTTCCTTG
GATTTTTGTCTGCCTTCGTCAATGCGTCCTTCAGTTTCGTTGGTGTCGAA
ACAGTCGTCATCACTGCCGCCGAATCGGTCGACCCGCACTACTCCATCCC
CAAAGCTGCCCGTCGCGTGACATACCGAATTGCGTTCTTCTACATTCTCG
GTGCACTGCTCATTGGAATCATTGTCAGCCCTACAAACCCAGATCTTGTT
TCTGGTTCCGACAACGCCAACAGCTCCCCTTGGGTCATTGCTATCAAGCA
GGCCGGAATTAGCGCCTTACCGTCTGTGGTCAACGCTTGTATCCTTATAT
CGGCCTGGTCTGCAGGCAATTCGTATTGCTGGGTGGGATCGCGCATGATT
GTGGCCATGACGACCGACCGTCAGTTACCACAGGTGTTTGGCCGGGTTAA
CAAGATGGGCGTGCCGTACGTTGCCGTCATCACCTCCTGGCTTTTTGGGC
CGTTGGCATATCTGATTTGTTCGCAGCTCCAATATCGACCTCTGGTCCGG
TCGGCTGCAGGAGGGCGAGATTGTTATCCGAGAGGGCGGGCCCAAGACCC
GTGTGAGACGCTTCGTGGACTGGTTCTTCTAAGTCTTGGATCCGGTGGTC
CGGCACAGGCTTTCAGCTGGCTTCTTAATCTGAGCACCATTGCTGGACTG
ATCGCGTGGGCGACGCTGTCCTTCTGCTACATTCGCTTCTATTCGGCCAT
GAAAGCGCAGGGCGTCAGCCGGGACACTTTGCCCTGGCAGTCGCCTTTCC
AGCCATACACGGCGTGGGTGGGTTTCATTGGCTCAACTATCATCACCCTG
GTGGCGGGTTTCCCTGTGTTCCTCAAGGGTAACTGGTCCACTTCGGACTT
CTTTGCCTCATATGTGGGCATTCCTATCTTCATTGTGCCGATTATCCTCT
GGAAGGTGTTCAAGCGCACGAAGATGCACCAGTCCACCACTGTCACCATG
GAGGACGAGAAGATCCGCGAGTACGGATACGGTGGTCCTGAGGTGGTCAA
CTACGACGATGAAGCTCCCCCGCTCAAAGGTGAGCTGGAGCTCAATGTCG
GTGGCCGTGGTGCTACCCAACGGCGGCTGAAGAACTACCAGGTCAGCATG
ATCGGGTTCTGTGGTGGAATTGGAACCGGTCTCTTCGTGGGAGCAGGCTC
TGCATATGCAGAAGCAGGTCCCGCTGGTTTGCTGCTGGCCTACATTGTTA
TTGGATTCGTGCTGTGGTGTGTCATGCAGAGTATTGCGGAACTGGCTACC
TTGCTGCCCACAGCGGGATCATTCCCTCACTGGGCCACTCGCTTCATCGA
TCCGGCCGTCGGCTTTTCCCTCGCTATCACATACGGTTACTGTTATACAA
TTGCGATTGCTTCAGAGGTGTCCGCTTCTGCGGTCATTGTTGGCTATTGG
ACAGACTTGACACCGGCGGTGGTTATTACGGTCGGGCTGGTGCTGATCTT
GGCTATCAACCTGATGAGCGTACGCTTTTATGGTGAAAGTGAGGTCATCG
CAGGCGCTATTAAGGTGTTGTGCTTTGTCGGATTGGTCATTGTCGCTATC
GTCATCACCTCAGGTGGCGGTCCCAATCACCAAACCATCGGATTCCGCTA
CTGGCACAATCCCGGAGCCTGGACGAACTACAATGGCATCACTGGCCCGA
CTGGACACTTCCTTGGATTTTTGTCTGCCTTCGTCAATGCGTCCTTCAGT
TTCGTTGGTGTCGAAACAGTCGTCATCACTGCCGCCGAATCGGTCGACCC
GCACTACTCCATCCCCAAAGCTGCCCGTCGCGTGACATACCGAATTGCGT
TCTTCTACATTCTCGGTGCACTGCTCATTGGAATCATTGTCAGCCCTACA
AACCCAGATCTTGTTTCTGGTTCCGACAACGCCAACAGCTCCCCTTGGGT
CATTGCTATCAAGCAGGCCGGAATTAGCGCCTTACCGTCTGTGGTCAACG
CTTGTATCCTTATATCGGCCTGGTCTGCAGGCAATTCGTATTGCTGGGTG
GGATCGCGCATGATTGTGGCCATGACGACCGACCGTCAGTTACCACAGGT
GTTTGGCCGGGTTAACAAGATGGGCGTGCCGTACGTTGCCGTCATCACCT
CCTGGCTTTTTGGGCCGTTGGCATATCTGATTTGTTCGCAGCTCCAATAT
CGACCTCTGGTCCGGTCGGCTGCAGGAGGGCGAGATTGTTATCCGAGAGG
GCGGGCCCAAGACCCGTGTGAGACGCTTCGTGGACTGGTTCTTCTAAGTC
TTGGATCCGGTGGTCCGGCACAGGCTTTCAGCTGGCTTCTTAATCTGAGC
ACCATTGCTGGACTGATCGCGTGGGCGACGCTGTCCTTCTGCTACATTCG
CTTCTATTCGGCCATGAAAGCGCAGGGCGTCAGCCGGGACACTTTGCCCT
GGCAGTCGCCTTTCCAGCCATACACGGCGTGGGTGGGTTTCATTGGCTCA
ACTATCATCACCCTGGTGGCGGGTTTCCCTGTGTTCCTCAAGGGTAACTG
GTCCACTTCGGACTTCTTTGCCTCATATGTGGGCATTCCTATCTTCATTG
TGCCGATTATCCTCTGGAAGGTGTTCAAGCGCACGAAGATGCACCAGTCC
ACCACTGTCACCATGGAGGACGAGAAGATCCGCGAGTACGGATACGGTGG
TCCTGAGGTGGTCAACTACGACGATGAAGCTCCCCCGCTCAAAGGTGAGC
TGGAGCTCAATGTCGGTGGCCGTGGTGCTACCCAACGGCGGCTGAAGAAC
TACCAGGTCAGCATGATCGGGTTCTGTGGTGGAATTGGAACCGGTCTCTT
CGTGGGAGCAGGCTCTGCATATGCAGAAGCAGGTCCCGCTGGTTTGCTGC
TGGCCTACATTGTTATTGGATTCGTGCTGTGGTGTGTCATGCAGAGTATT
GCGGAACTGGCTACCTTGCTGCCCACAGCGGGATCATTCCCTCACTGGGC
CACTCGCTTCATCGATCCGGCCGTCGGCTTTTCCCTCGCTATCACATACG
GTTACTGTTATACAATTGCGATTGCTTCAGAGGTGTCCGCTTCTGCGGTC
ATTGTTGGCTATTGGACAGACTTGACACCGGCGGTGGTTATTACGGTCGG
GCTGGTGCTGATCTTGGCTATCAACCTGATGAGCGTACGCTTTTATGGTG
AAAGTGAGGTCATCGCAGGCGCTATTAAGGTGTTGTGCTTTGTCGGATTG
GTCATTGTCGCTATCGTCATCACCTCAGGTGGCGGTCCCAATCACCAAAC
CATCGGATTCCGCTACTGGCACAATCCCGGAGCCTGGACGAACTACAATG
GCATCACTGGCCCGACTGGACACTTCCTTGGATTTTTGTCTGCCTTCGTC
AATGCGTCCTTCAGTTTCGTTGGTGTCGAAACAGTCGTCATCACTGCCGC
CGAATCGGTCGACCCGCACTACTCCATCCCCAAAGCTGCCCGTCGCGTGA
CATACCGAATTGCGTTCTTCTACATTCTCGGTGCACTGCTCATTGGAATC
ATTGTCAGCCCTACAAACCCAGATCTTGTTTCTGGTTCCGACAACGCCAA
CAGCTCCCCTTGGGTCATTGCTATCAAGCAGGCCGGAATTAGCGCCTTAC
CGTCTGTGGTCAACGCTTGTATCCTTATATCGGCCTGGTCTGCAGGCAAT
TCGTATTGCTGGGTGGGATCGCGCATGATTGTGGCCATGACGACCGACCG
TCAGTTACCACAGGTGTTTGGCCGGGTTAACAAGATGGGCGTGCCGTACG
TTGCCGTCATCACCTCCTGGCTTTTTGGGCCGTTGGCATATCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006865 | amino acid transport |
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004440-T1.utr3p1 | KJC3_004440-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004440-T1.utr5p1 | KJC3_004440-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004840 |
| DBxref | InterPro:IPR004841 |
| DBxref | PFAM:PF13520 |
| DBxref | PFAM:PF00324 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5290237..5293978 - |
|
