You are here

Home

KJC3_004452-T3, KJC3_004452-T3 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004452-T3
Unique NameKJC3_004452-T3
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:5321011..5322710+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004452-T3 ID=KJC3_004452-T3|Name=KJC3_004452-T3|organism=Aspergillus niger KJC3|type=mRNA|length=1700bp|location=Sequence derived from alignment at ch3:5321011..5322710+ (Aspergillus niger KJC3)
CATGAAGGGACAGACACATTCTGATAATACTTTCATCTGAATATAAGTCA
CTGCCATATTTTAATGATAATATAATGTCAGCCAACAACTCAGAGCCTGG
GGAATTCAATCAGATCCCCGTTATCGACCTCTCGGCATTGAGGAGCCCTG
TGCTGAAGGAGCGCCAACGGCTGGCAAAGGAGATCTTCACTGCCTGTACT
CAGGTCGGATTCTTCTACATCAAGGTATAATTCTTTCTCACTAACCTGGT
GGATACAGGAGCTGACTGTTACATAGAACCATGGGATAGCTGAAGATCTC
ATCGCTTCTCTCCATGACATGGCGCGTCAGTTCTTTACCCTCTCGCAGAA
GCAAAAGATGGATTATTATATTGGAAGGTCTAGGGTGTGAATATACATTT
TATCGACGAACGACAGACTACTGATACGAGATTAGAAATTCCGCGGTTTC
ATGCCTCTTTACTCAGAGCAGCCCACCGACACGGATCTCGGGGCCGCTCC
CAAGGCAGACCCTACCTCACCCGGGGCATTTTCCGAATCCTTCGATATCG
GATATGAAGTCGCAGCAGACCCTCTTAAAAGCCAACATGGCGGTCTTCCT
CTGGACACGTACGATCTGTACGGAGATAATCAATGGCCTGAGGAGGATGT
CCTCCCTGGCTTCCGCGAAGTCTATCTTCGGTACTTTGGTGAGGCGCTGG
CCTTATCTCGGGCGCTGATACGAATCTTTGCGCTAGCACTGGATCTACCC
GAGGACTTCTTCGACACGATGGTCAAGAACCCCGGGGCCACGTCGAGGAT
GTTGCACTATCCACCGCAGCCGGTTGCGGACGAGGTGAGAATCGGACTTG
GAGAACACACGGTAAGCAGGTATCTTAAAGACAAAGGAATGCGCATGCTG
AAACGAGAAATACCTATTTCTAGGACTATGAGTGCTTCACTATTCTATCA
CAAGATCAAATTCCAGCTCTGCAGGTCCTCAACGCTCGGCAGGAATGGAT
TCTGGCACCGCCGATACCGGGCACATTGGTTGTGAACATTTCGGATTGCT
TGTCCATCTGGTATGAATTGCTTTCTTTCGTAAGTTTCGATGTCTAGAAT
GTAATAACAATGTGTACAGGACAAACAAAAAGTTCAAATCGACAATCCAT
CGTGTGACAAACCTGACTGGACAGGAGCGATATACCGTCCCATTCTTCTT
TGGTGTGGACTATGACACCACTGTGGCGGTGCTACCGAGCTGCATTACCG
AGGACAATCCTGCGTGTAAGAAGCCGTTCAAAGCGGGGGAGGTAAGACGA
ATTGCATGCTTCAAGTTCTTCCTTCTCAAGGAACAGGCTAATTCTGGTAC
GTCATAGTGGGTGCGCCACCAATTGACTACGGCCTATGTTGGATACGAGC
CAGAGCCGCCGACCCAAGGGAACTAGGACCATTGCGCCGGGACCAAGAGG
GGTTGTAGAAGATGCATCGTGCAGATCCCTGGACTTGGGATCCAATGGGG
CATAAATAGATGGCTAAATATAATTCCCCAGTGCAGTTTCGCGGGGCCAG
CTTCGAATGGCTGTGCAGCATTTCGGACTATTAGTATTATTTCTGATTGA
GTGGATAATTACACTCTCAGAGAATGTTACTTTTTGTCATCAATAGGCAA
CATCGCATGGGGGTTTCAGCCCAACCTCTATCGTATTCTCACAATGTGAC
back to top

Coding sequence (CDS) from alignment at ch3:5321011..5322710+

>KJC3_004452-T3 ID=KJC3_004452-T3|Name=KJC3_004452-T3|organism=Aspergillus niger KJC3|type=CDS|length=2574bp|location=Sequence derived from alignment at ch3:5321011..5322710+ (Aspergillus niger KJC3)
ATGTCAGCCAACAACTCAGAGCCTGGGGAATTCAATCAGATCCCCGTTAT
CGACCTCTCGGCATTGAGGAGCCCTGTGCTGAAGGAGCGCCAACGGCTGG
CAAAGGAGATCTTCACTGCCTGTACTCAGGTCGGATTCTTCTACATCAAG
AACCATGGGATAGCTGAAGATCTCATCGCTTCTCTCCATGACATGGCGCG
TCAGTTCTTTACCCTCTCGCAGAAGCAAAAGATGGATTATTATATTGGAA
GGTCTAGGAAATTCCGCGGTTTCATGCCTCTTTACTCAGAGCAGCCCACC
GACACGGATCTCGGGGCCGCTCCCAAGGCAGACCCTACCTCACCCGGGGC
ATTTTCCGAATCCTTCGATATCGGATATGAAGTCGCAGCAGACCCTCTTA
AAAGCCAACATGGCGGTCTTCCTCTGGACACGTACGATCTGTACGGAGAT
AATCAATGGCCTGAGGAGGATGTCCTCCCTGGCTTCCGCGAAGTCTATCT
TCGGTACTTTGGTGAGGCGCTGGCCTTATCTCGGGCGCTGATACGAATCT
TTGCGCTAGCACTGGATCTACCCGAGGACTTCTTCGACACGATGGTCAAG
AACCCCGGGGCCACGTCGAGGATGTTGCACTATCCACCGCAGCCGGTTGC
GGACGAGGTGAGAATCGGACTTGGAGAACACACGGTAAGCAGGTATCTTA
AAGACAAAGGAATGCGCATGCTGAAACGAGAAATACCTATTTCTAGGACT
ATGAGTGCTTCACTATTCTATCACAAGATCAAATTCCAGCTCTGCAGGTC
CTCAACGCTCGGCAGGAATGGATTCTGGCACCGCCGATACCGGGCACATT
GGTTGTGAATGTCAGCCAACAACTCAGAGCCTGGGGAATTCAATCAGATC
CCCGTTATCGACCTCTCGGCATTGAGGAGCCCTGTGCTGAAGGAGCGCCA
ACGGCTGGCAAAGGAGATCTTCACTGCCTGTACTCAGGTCGGATTCTTCT
ACATCAAGAACCATGGGATAGCTGAAGATCTCATCGCTTCTCTCCATGAC
ATGGCGCGTCAGTTCTTTACCCTCTCGCAGAAGCAAAAGATGGATTATTA
TATTGGAAGGTCTAGGAAATTCCGCGGTTTCATGCCTCTTTACTCAGAGC
AGCCCACCGACACGGATCTCGGGGCCGCTCCCAAGGCAGACCCTACCTCA
CCCGGGGCATTTTCCGAATCCTTCGATATCGGATATGAAGTCGCAGCAGA
CCCTCTTAAAAGCCAACATGGCGGTCTTCCTCTGGACACGTACGATCTGT
ACGGAGATAATCAATGGCCTGAGGAGGATGTCCTCCCTGGCTTCCGCGAA
GTCTATCTTCGGTACTTTGGTGAGGCGCTGGCCTTATCTCGGGCGCTGAT
ACGAATCTTTGCGCTAGCACTGGATCTACCCGAGGACTTCTTCGACACGA
TGGTCAAGAACCCCGGGGCCACGTCGAGGATGTTGCACTATCCACCGCAG
CCGGTTGCGGACGAGGTGAGAATCGGACTTGGAGAACACACGGTAAGCAG
GTATCTTAAAGACAAAGGAATGCGCATGCTGAAACGAGAAATACCTATTT
CTAGGACTATGAGTGCTTCACTATTCTATCACAAGATCAAATTCCAGCTC
TGCAGGTCCTCAACGCTCGGCAGGAATGGATTCTGGCACCGCCGATACCG
GGCACATTGGTTGTGAATGTCAGCCAACAACTCAGAGCCTGGGGAATTCA
ATCAGATCCCCGTTATCGACCTCTCGGCATTGAGGAGCCCTGTGCTGAAG
GAGCGCCAACGGCTGGCAAAGGAGATCTTCACTGCCTGTACTCAGGTCGG
ATTCTTCTACATCAAGAACCATGGGATAGCTGAAGATCTCATCGCTTCTC
TCCATGACATGGCGCGTCAGTTCTTTACCCTCTCGCAGAAGCAAAAGATG
GATTATTATATTGGAAGGTCTAGGAAATTCCGCGGTTTCATGCCTCTTTA
CTCAGAGCAGCCCACCGACACGGATCTCGGGGCCGCTCCCAAGGCAGACC
CTACCTCACCCGGGGCATTTTCCGAATCCTTCGATATCGGATATGAAGTC
GCAGCAGACCCTCTTAAAAGCCAACATGGCGGTCTTCCTCTGGACACGTA
CGATCTGTACGGAGATAATCAATGGCCTGAGGAGGATGTCCTCCCTGGCT
TCCGCGAAGTCTATCTTCGGTACTTTGGTGAGGCGCTGGCCTTATCTCGG
GCGCTGATACGAATCTTTGCGCTAGCACTGGATCTACCCGAGGACTTCTT
CGACACGATGGTCAAGAACCCCGGGGCCACGTCGAGGATGTTGCACTATC
CACCGCAGCCGGTTGCGGACGAGGTGAGAATCGGACTTGGAGAACACACG
GTAAGCAGGTATCTTAAAGACAAAGGAATGCGCATGCTGAAACGAGAAAT
ACCTATTTCTAGGACTATGAGTGCTTCACTATTCTATCACAAGATCAAAT
TCCAGCTCTGCAGGTCCTCAACGCTCGGCAGGAATGGATTCTGGCACCGC
CGATACCGGGCACATTGGTTGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004452KJC3_004452Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004452-T3KJC3_004452-T3-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004452-T3.utr5p1KJC3_004452-T3.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004452-T3.exon1KJC3_004452-T3.exon1Aspergillus niger KJC3exon
KJC3_004452-T3.exon2KJC3_004452-T3.exon2Aspergillus niger KJC3exon
KJC3_004452-T3.exon3KJC3_004452-T3.exon3Aspergillus niger KJC3exon
KJC3_004452-T3.exon4KJC3_004452-T3.exon4Aspergillus niger KJC3exon
KJC3_004452-T3.exon5KJC3_004452-T3.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004452-T3.cdsKJC3_004452-T3.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004452-T3.utr3p1KJC3_004452-T3.utr3p1Aspergillus niger KJC3three_prime_UTR
KJC3_004452-T3.utr3p2KJC3_004452-T3.utr3p2Aspergillus niger KJC3three_prime_UTR
KJC3_004452-T3.utr3p3KJC3_004452-T3.utr3p3Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR026992
DBxrefInterPro:IPR027443
DBxrefPFAM:PF03171
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:5321011..5322710 +
Powered by Drupal