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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:26612..27904- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004529-T1 ID=KJC3_004529-T1|Name=KJC3_004529-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1293bp|location=Sequence derived from alignment at ch4:26612..27904- (Aspergillus niger KJC3)
ATGACAAACTTAACCACCACGTCGAAGATCCGGCGGGCATGCGATCGGTG
CCATACTCAGAAGTTGCGCTGTATCCGGTCGGAACATGAGAGGGCCTGTG
TTCGATGTGCTCGCGCCAGCCTCGTCTGCGTCTTCAGTCCGCCAACCCGG
CATCGCACATCGCCCAGCGAGGCCAAGAGGCTTGGGTGCTCTCAAGCTTT
AAATAGCGCCCTCCATCCGACGAGGACGGGCTCCCTGTGGTCCCCCGATT
CGTCCACCCTGCTGGAGCTCGACCCGTCCGCAGCGCCTCTTCATCCGGGG
CTGCCATGCCCGAAGCCGGTGGGGATGCTCGACCCCTTGCCCGCCGCAAC
ATGCGACCCTTTTACCCCGGTCGAGGGGTTCAGTTGGGACCATCTGCTGA
ACACCTCACCCCCCATGGCCCTCGGGGATCTCATCCCCGGCGAGCTAGCA
TTGACGACCACCACCTTTTCTACCTCTACCTCCCCCTTGTCGCCCAGCCA
TCCCCTCCAGACCCCGCCGGCCTCACGCATAGCCCCCCAGCCGCACAGTA
GCCCTCCCGAGCCCACTTCCATTGCAAACCGCACCGAATGGGTGGCAGAG
CTCGCCCGCCTCAACGTCAAGCTGCTCACACACGCCCAGCAGATTGCGCA
CCGACAGCCACGAGAAACGCCACGGAGGTCCTCGCCCACCTCGGCCCCTG
ACCATGACTTGGATGAGGACCGACCGACCTTCGCCGTGGATCAAACCTTC
CTGTTGTCTCAGCAGCTCATCGACCTCCTGAGCCAGCAGGACGCCCCGTC
CGCCACGGGGGCACCCGCGCAGAGCCCGCCTCCTGGCCCACCGCAGCTGC
CTCGAACTCTGCGCAGCCTGGACCCCGCGTCCATCCTGCTCGTGCTGTCG
TGCCACCTGCGGGTTCTAGAAAGCTATAGCCAGATGTTTGCCCACGTTCA
AGCATGGCAGGAGCACGGCGGCGCCTCCCTCGCCGCCACGGGGATCGGGC
TCCCGGCCCTCAACATCGGCGCCTTCTCCCTGCCTGCCTCCTCCCCGCGG
TTGCAGATCGCCGTCATTCTGCAGCTCGCGGAGCAACTGCTCAGTCGGCT
GCGTGAGATGGTCTTGCTCCCGGATGTGCCGGCACTGGCAGCCACCCGAA
GCTTGTGCCATGAGATGGGCGCCAGTCACCATTCGACGGCGATGCACGAG
GTGGTGTCCATCACTCTCCAGGCCATCAGTGCGCGGGAGCTAGGGATGAC
CAAGACGATCGCTTGGATCAAGCGGTCGTTGCAGGAGAGCTAG back to topCoding sequence (CDS) from alignment at ch4:26612..27904- >KJC3_004529-T1 ID=KJC3_004529-T1|Name=KJC3_004529-T1|organism=Aspergillus niger KJC3|type=CDS|length=1293bp|location=Sequence derived from alignment at ch4:26612..27904- (Aspergillus niger KJC3)
ATGACAAACTTAACCACCACGTCGAAGATCCGGCGGGCATGCGATCGGTG
CCATACTCAGAAGTTGCGCTGTATCCGGTCGGAACATGAGAGGGCCTGTG
TTCGATGTGCTCGCGCCAGCCTCGTCTGCGTCTTCAGTCCGCCAACCCGG
CATCGCACATCGCCCAGCGAGGCCAAGAGGCTTGGGTGCTCTCAAGCTTT
AAATAGCGCCCTCCATCCGACGAGGACGGGCTCCCTGTGGTCCCCCGATT
CGTCCACCCTGCTGGAGCTCGACCCGTCCGCAGCGCCTCTTCATCCGGGG
CTGCCATGCCCGAAGCCGGTGGGGATGCTCGACCCCTTGCCCGCCGCAAC
ATGCGACCCTTTTACCCCGGTCGAGGGGTTCAGTTGGGACCATCTGCTGA
ACACCTCACCCCCCATGGCCCTCGGGGATCTCATCCCCGGCGAGCTAGCA
TTGACGACCACCACCTTTTCTACCTCTACCTCCCCCTTGTCGCCCAGCCA
TCCCCTCCAGACCCCGCCGGCCTCACGCATAGCCCCCCAGCCGCACAGTA
GCCCTCCCGAGCCCACTTCCATTGCAAACCGCACCGAATGGGTGGCAGAG
CTCGCCCGCCTCAACGTCAAGCTGCTCACACACGCCCAGCAGATTGCGCA
CCGACAGCCACGAGAAACGCCACGGAGGTCCTCGCCCACCTCGGCCCCTG
ACCATGACTTGGATGAGGACCGACCGACCTTCGCCGTGGATCAAACCTTC
CTGTTGTCTCAGCAGCTCATCGACCTCCTGAGCCAGCAGGACGCCCCGTC
CGCCACGGGGGCACCCGCGCAGAGCCCGCCTCCTGGCCCACCGCAGCTGC
CTCGAACTCTGCGCAGCCTGGACCCCGCGTCCATCCTGCTCGTGCTGTCG
TGCCACCTGCGGGTTCTAGAAAGCTATAGCCAGATGTTTGCCCACGTTCA
AGCATGGCAGGAGCACGGCGGCGCCTCCCTCGCCGCCACGGGGATCGGGC
TCCCGGCCCTCAACATCGGCGCCTTCTCCCTGCCTGCCTCCTCCCCGCGG
TTGCAGATCGCCGTCATTCTGCAGCTCGCGGAGCAACTGCTCAGTCGGCT
GCGTGAGATGGTCTTGCTCCCGGATGTGCCGGCACTGGCAGCCACCCGAA
GCTTGTGCCATGAGATGGGCGCCAGTCACCATTCGACGGCGATGCACGAG
GTGGTGTCCATCACTCTCCAGGCCATCAGTGCGCGGGAGCTAGGGATGAC
CAAGACGATCGCTTGGATCAAGCGGTCGTTGCAGGAGAGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.1 |
| Note | antiSMASH:Cluster_4.2 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:26612..27904 - |
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