|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:123633..125721+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004569-T1 ID=KJC3_004569-T1|Name=KJC3_004569-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2089bp|location=Sequence derived from alignment at ch4:123633..125721+ (Aspergillus niger KJC3)
ACCATGCGCTGCTCCCTCATCTCCCTTCTAGGCCTGGCGGCCGTCCCGGC
CCTTGCAGGCTGTCCCTTCGCGCACACTGCGAATATGGACATTGATGACA
TTGTGAAAGCACACGCTCACATGTCTCGAGGGCTGGTTGCCTCCAAGAGC
AGCCCCTCAACTGTTCCTACCCCCTCTAGCACCCCTTCTGTCGGGCAGAA
AGGCGTGTTCATGATGAACCGCATTGCTCCTGGCACCTCCGAACTCTACA
TTGCCAACACAGATGGCAGTAATGAACGCCCACTCCTCTCCAATCCCGTC
TACGAGTACCACGCCTCCTTCTCCCCGGATGGAGAATGGATCACATTCAC
CAGCGAGCGCAATGGTGACGGTAACTCTGACATCTACCGCGTACGGACCA
ACGGCTCCGATCTCCAGGAATTGGTTGCCACGCCTGCAGTGGAAGACTCC
GTCGTTATCTCTCCCAACGGCCGCCTGGCAGCCTACGTCTCCACCGCCAA
CAACATGAAGGCAAACATCTGGATCCTTGATCTGCAGACCGGCGCGCAGT
GGAACCTCACTAACACGCCCACCACTGCCGCCAATTCCTCCCTCATGGAG
AGCTATCTCCGTCCTGCCTGGTCTCCCGATGGCGAATGGATAGCCTTCTC
TTCGGACCGCAACACCCAATGGGACGGACACGGCGTACCGACCTTCCTCG
GCCGCACGGGCTGGGAAACGACACAGGAACTCTCACTCTACGCCATCCGC
CCCAATGGCTCTGACTTCCGTCAGATCATCTCCAAGCCATACTACTCCCT
GGGATCTCCGAAGTGGTCAGCAGACGGTAAACGCATCGTCTACTATGAAA
TGACCCGGGAAGACACCTACAATGCCCATCGTCCAGAAGCCATAACCACA
GCCAACTCCACCATCATGTCCGTAGACTTCGAGACAGGCACCGATGTGCG
CGTGGAAGTCGCCGGCTCCGGTGTCAAGCAATTCCCCCAGTACCTGGACA
AGAACGGCACCATCGCCTACACCCTCAAAGGCGGCACCAGCGAGGGCTTC
TACACCACCGCAGGACTCTACGTCAACACGACCTCGGCGACCCTCCGGTC
CCCGGCGTGGTCCCCCGACGGCAAGCAAGTAGTCTACGAAAAGACCACCT
GGAGCATCCGCGCGGGGTACAAGCAGCTCTACAGCTGGGACAGTGACTGG
GACTACCGCTTCACGGACGTCTTCCCTCAGGTCTCGCACCAGGAGCGCAT
CGCCATCACACAGAAGCAGCTGGGCAATTCGTCCATCGTGACGTTGAACA
CAACCGGAGGCGACTTGCAACTCGTCTACGACCCGAGCACGGCGGACTTT
GTCAGCGATGACGAAACCACAGGATTGAGCGCTTACCAGCCCAGCTGGTC
ACCCTGCGGCGAGTGGCTCGTCTTCGGCGTCGGATTCTGGTTCGAGACGA
GAGAAGCCTCGGGCGGATGGATCGTGCGGGCCACCGCCAACGGCAGCTAC
GCCGAGGTACTCGTGAACAGCAGCTACTCCATCACCGAGGATGGAGCCCT
GAATAACGGGTTCCCGAGTTTCTCGCCGGACGGCAAGAAAGTGGTGTATC
GGGTTTGGGGAGCCGACACTGCAAGCTACGGCAACGCCAGCGAGATCGGG
CTGCGGGTGCTGGACCTCGAGACGCGAAAGACAACCGTCCTGACCACAGA
ATGGGATAATCTGCCCCAGTTCTCTCCCGATGGGGAGCTCATCCTATTCA
CACGCAAAACCAGCACGTACAACTATGATGTGTGTACTATCCGGCCGGAT
GGGACAGACCTACGCGTGTTGACGAGCAGCGGTGCTAATGATGCGCATGC
GGTGTGGTCGCAGGATGGGCGGATCATGTGGTCTACTGGCATGTATGGGT
TCCGGTTTGAGTGTGCGCTGTATGATGATACGTTCCAGCCGTATGGGCAG
ATTATGATTATGGATGCGGATGGGGGGAATAAGAAGTTGATGACCAACTC
GATGTGGGAGGATTCGATGCCATTGTTCTTGCCGCTGGAGGTACTTTAAT
TGGCGGCGGGAGGATGCTCTGATTTTTAGAGGATATGTG back to topCoding sequence (CDS) from alignment at ch4:123633..125721+ >KJC3_004569-T1 ID=KJC3_004569-T1|Name=KJC3_004569-T1|organism=Aspergillus niger KJC3|type=CDS|length=2046bp|location=Sequence derived from alignment at ch4:123633..125721+ (Aspergillus niger KJC3)
ATGCGCTGCTCCCTCATCTCCCTTCTAGGCCTGGCGGCCGTCCCGGCCCT
TGCAGGCTGTCCCTTCGCGCACACTGCGAATATGGACATTGATGACATTG
TGAAAGCACACGCTCACATGTCTCGAGGGCTGGTTGCCTCCAAGAGCAGC
CCCTCAACTGTTCCTACCCCCTCTAGCACCCCTTCTGTCGGGCAGAAAGG
CGTGTTCATGATGAACCGCATTGCTCCTGGCACCTCCGAACTCTACATTG
CCAACACAGATGGCAGTAATGAACGCCCACTCCTCTCCAATCCCGTCTAC
GAGTACCACGCCTCCTTCTCCCCGGATGGAGAATGGATCACATTCACCAG
CGAGCGCAATGGTGACGGTAACTCTGACATCTACCGCGTACGGACCAACG
GCTCCGATCTCCAGGAATTGGTTGCCACGCCTGCAGTGGAAGACTCCGTC
GTTATCTCTCCCAACGGCCGCCTGGCAGCCTACGTCTCCACCGCCAACAA
CATGAAGGCAAACATCTGGATCCTTGATCTGCAGACCGGCGCGCAGTGGA
ACCTCACTAACACGCCCACCACTGCCGCCAATTCCTCCCTCATGGAGAGC
TATCTCCGTCCTGCCTGGTCTCCCGATGGCGAATGGATAGCCTTCTCTTC
GGACCGCAACACCCAATGGGACGGACACGGCGTACCGACCTTCCTCGGCC
GCACGGGCTGGGAAACGACACAGGAACTCTCACTCTACGCCATCCGCCCC
AATGGCTCTGACTTCCGTCAGATCATCTCCAAGCCATACTACTCCCTGGG
ATCTCCGAAGTGGTCAGCAGACGGTAAACGCATCGTCTACTATGAAATGA
CCCGGGAAGACACCTACAATGCCCATCGTCCAGAAGCCATAACCACAGCC
AACTCCACCATCATGTCCGTAGACTTCGAGACAGGCACCGATGTGCGCGT
GGAAGTCGCCGGCTCCGGTGTCAAGCAATTCCCCCAGTACCTGGACAAGA
ACGGCACCATCGCCTACACCCTCAAAGGCGGCACCAGCGAGGGCTTCTAC
ACCACCGCAGGACTCTACGTCAACACGACCTCGGCGACCCTCCGGTCCCC
GGCGTGGTCCCCCGACGGCAAGCAAGTAGTCTACGAAAAGACCACCTGGA
GCATCCGCGCGGGGTACAAGCAGCTCTACAGCTGGGACAGTGACTGGGAC
TACCGCTTCACGGACGTCTTCCCTCAGGTCTCGCACCAGGAGCGCATCGC
CATCACACAGAAGCAGCTGGGCAATTCGTCCATCGTGACGTTGAACACAA
CCGGAGGCGACTTGCAACTCGTCTACGACCCGAGCACGGCGGACTTTGTC
AGCGATGACGAAACCACAGGATTGAGCGCTTACCAGCCCAGCTGGTCACC
CTGCGGCGAGTGGCTCGTCTTCGGCGTCGGATTCTGGTTCGAGACGAGAG
AAGCCTCGGGCGGATGGATCGTGCGGGCCACCGCCAACGGCAGCTACGCC
GAGGTACTCGTGAACAGCAGCTACTCCATCACCGAGGATGGAGCCCTGAA
TAACGGGTTCCCGAGTTTCTCGCCGGACGGCAAGAAAGTGGTGTATCGGG
TTTGGGGAGCCGACACTGCAAGCTACGGCAACGCCAGCGAGATCGGGCTG
CGGGTGCTGGACCTCGAGACGCGAAAGACAACCGTCCTGACCACAGAATG
GGATAATCTGCCCCAGTTCTCTCCCGATGGGGAGCTCATCCTATTCACAC
GCAAAACCAGCACGTACAACTATGATGTGTGTACTATCCGGCCGGATGGG
ACAGACCTACGCGTGTTGACGAGCAGCGGTGCTAATGATGCGCATGCGGT
GTGGTCGCAGGATGGGCGGATCATGTGGTCTACTGGCATGTATGGGTTCC
GGTTTGAGTGTGCGCTGTATGATGATACGTTCCAGCCGTATGGGCAGATT
ATGATTATGGATGCGGATGGGGGGAATAAGAAGTTGATGACCAACTCGAT
GTGGGAGGATTCGATGCCATTGTTCTTGCCGCTGGAGGTACTTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004569-T1.utr5p1 | KJC3_004569-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004569-T1.utr3p1 | KJC3_004569-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-18) |
| Note | CAZy:PL22_1 |
| DBxref | InterPro:IPR011659 |
| DBxref | InterPro:IPR011042 |
| DBxref | PFAM:PF07676 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:123633..125721 + |
|
