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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:278005..280324+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004634-T1 ID=KJC3_004634-T1|Name=KJC3_004634-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2320bp|location=Sequence derived from alignment at ch4:278005..280324+ (Aspergillus niger KJC3)
ATTGGCTGAGAGCGAAGAATTCCCACTTCGACGGAACAGGAGTTTTGTTG
CAACTGGTCGGCACTCACACTGGTCGCTGAGCTAAAACAACACGAGCGCG
CCAACCCCGGATGGCCGACTACAGTGGCTCGATCCCGACAACCAGCTCCA
CTTTCAGGGCCTGGAGAAAAGGTCTGCTTCCCCACGGGACATAATGCTCT
GGGGTAGAAATAGAGCGACGGCCACAACTGCTTAAGATGTTTCGGTCTCC
AGAATCGTGGAGTCAACCTGGCACTGGCCTTTGACTCATTGATGGTCATC
TTTCTGGCACTATGGCTACCAAAATGTCCTCTCTACCGGCGGATAATGCC
GCTTTGACTCGCACTGCACAGGCCGTGGCTGCTCGGGAAGTAGAGCAGCA
GAGCTGGCTGGAGAGAAAGCTGAAGCCGACGAAGGTGAGAGCTTGGTATC
CCTTCAAGGGAACCCCATTGCTCTACGCGACATGTGGTTTCGGCAGTCTG
GGTGATGCCCTGTTTGGGTACAACTCTGGTATACCTTTCTTCTTTTCAGC
TTTCTGATAAACAAGTCAATATGAGTCGTTGCTAATAGCTATGCTACATA
GGAATCATGTCAGGTCTCCTCGTCAATCCTGCTTTTGTAGCTCGCTTCTT
CAAAGACTACGGCGGTGCTGACGGCTCAACAACCGGAGTCGATCCTTCGA
TCACCGGGATAGCTGTTGCTTGTCTACAAGCGTCCGCAGCGGTGGGTGCA
CTCCTTGCAGGACGCTTGGGCGATATGATGGGGCGCAAGCGATGTGTTCG
TCTTGGCGGGTTCATCTACTTTTTCAGTGCGTTCATTCAGATCTTCGCGC
CTGGGTTTGGCACCTTCATTGCTGGTCGCACCATTCAAGGTCTAGGTGTT
GGGTTTCTTTCCATGACAGTACCTATCATTCAGACTGAGATTGCCGCCCC
GCATCGTCGTGGTTTAATGGTGGGAATTGAATACACGTTTCAGATTGCAG
GATACATGCTTTCATGTTGGGTAGATTATGGATTTAATTTTCTTTTGCCC
AGTGAAATGTCCTGGCAAGGTCCATTCATCATCCAAATTGCTCTCTCCTT
CATTCTTCTGGCCATGTCGTTCTTTCTCCCCGAGACACCTCGTTGGCTGG
CCAAAAACGGATTCATGCAAGAAAGCTTGCAGACGGTCGCTGACCTTCAC
GCCAATGGCGATACTCAAGCGGAACATGTGCAGCAGGTGTTTGTGGAAAT
CGAAGAAGCAGTTATCTTCGAAACCAACTTAGGAAAGTCATCGTGGATGG
TGAGTTCTATTACGCCTGTCATGGGATGTCATGCAAGTGCGAAACTGACC
ATAGACAGGAAATGTTCACCCGATACCGTAAGCGGACCATCGTCGGAGTA
ACTGTCCAAATGTTTGCACAACTTAACGGAATCAACATCATCTCCTTTTA
CCTTCCCAGCACACTTGCTACCGCCGGCTTCGATGAGCGAAAATCCCTTC
TGTACACCGCAGCCAATGCACTACCTTACACTGCGGCCACAATTTCGACT
TGGTGGTTAGCAGACCGATGGGGACGGAAACCATTACTAATCCTTGGAGG
TGAGTCCATTTTCTCCCCTCCCGATACCTTCATGTACACTGTAAGCACCC
GGCTAAGACATGCATCAAAACAGGTATCGGAATGGCAGTCCTGCTTGGCA
TCGTCTGCGCCTTCACCGAAGCAGACCTAGACGTCCAGGTCCGCGCCAAG
GGCCAATACGCCTTCGTTATGCTATACAACATCCTATACGGCTTCACCTG
GGGTCCAATGCCATGGCTGCTACCAGCTGAAATCTTCCCCTTGCGTGGCC
GCAGTAAAGGAATGGCTCTGGCTACTACCAGCAACTGGATCTTCAACTTC
ATCATCGGCATGGTATCTCCGGATGCGTTCGCAGGTATCAACGGATACTT
CTACGTTGTTATTGCTGGGTTCTGTCTCTTCTCTGCAGGCCTGGTACACT
TCTACTATGTTGAGACGGCCAATAGCACGCTGGAGGAAGTTGCAGAGTTG
TTTGGCGATACAGCGTTTGCAGATGCTGATGGGGAGGCGAGGGAGGCTTC
TGACGTGCGGATAGATTATAGGAAGGATGTTGTGTGATTACCAGTCCGTG
TGTTGTGCAGTATGGCGGGCAGCACTGGCCCATCGCATATCAGCGTGGCG
GTACAGTCGTCATATTCTTTTGAAGAAATATGTCTATACTTACGGAGCAG
AACCAGGGTACATAGCACCCTTCACCAGCGCTAGTCTTTCCGCTAATAAT
GATGACGATGAATACGAGAC back to topCoding sequence (CDS) from alignment at ch4:278005..280324+ >KJC3_004634-T1 ID=KJC3_004634-T1|Name=KJC3_004634-T1|organism=Aspergillus niger KJC3|type=CDS|length=6480bp|location=Sequence derived from alignment at ch4:278005..280324+ (Aspergillus niger KJC3)
ATGGCTACCAAAATGTCCTCTCTACCGGCGGATAATGCCGCTTTGACTCG
CACTGCACAGGCCGTGGCTGCTCGGGAAGTAGAGCAGCAGAGCTGGCTGG
AGAGAAAGCTGAAGCCGACGAAGGTGAGAGCTTGGTATCCCTTCAAGGGA
ACCCCATTGCTCTACGCGACATGTGGTTTCGGCAGTCTGGGTGATGCCCT
GTTTGGGTACAACTCTGGAATCATGTCAGGTCTCCTCGTCAATCCTGCTT
TTGTAGCTCGCTTCTTCAAAGACTACGGCGGTGCTGACGGCTCAACAACC
GGAGTCGATCCTTCGATCACCGGGATAGCTGTTGCTTGTCTACAAGCGTC
CGCAGCGGTGGGTGCACTCCTTGCAGGACGCTTGGGCGATATGATGGGGC
GCAAGCGATGTGTTCGTCTTGGCGGGTTCATCTACTTTTTCAGTGCGTTC
ATTCAGATCTTCGCGCCTGGGTTTGGCACCTTCATTGCTGGTCGCACCAT
TCAAGGTCTAGGTGTTGGGTTTCTTTCCATGACAGTACCTATCATTCAGA
CTGAGATTGCCGCCCCGCATCGTCGTGGTTTAATGGTGGGAATTGAATAC
ACGTTTCAGATTGCAGGATACATGCTTTCATGTTGGGTAGATTATGGATT
TAATTTTCTTTTGCCCAGTGAAATGTCCTGGCAAGGTCCATTCATCATCC
AAATTGCTCTCTCCTTCATTCTTCTGGCCATGTCGTTCTTTCTCCCCGAG
ACACCTCGTTGGCTGGCCAAAAACGGATTCATGCAAGAAAGCTTGCAGAC
GGTCGCTGACCTTCACGCCAATGGCGATACTCAAGCGGAACATGTGCAGC
AGGTGTTTGTGGAAATCGAAGAAGCAGTTATCTTCGAAACCAACTTAGGA
AAGTCATCGTGGATGGAAATGTTCACCCGATACCGTAAGCGGACCATCGT
CGGAGTAACTGTCCAAATGTTTGCACAACTTAACGGAATCAACATCATCT
CCTTTTACCTTCCCAGCACACTTGCTACCGCCGGCTTCGATGAGCGAAAA
TCCCTTCTGTACACCGCAGCCAATGCACTACCTTACACTGCGGCCACAAT
TTCGACTTGGTGGTTAGCAGACCGATGGGGACGGAAACCATTACTAATCC
TTGGAGGTATCGGAATGGCAGTCCTGCTTGGCATCGTCTGCGCCTTCACC
GAAGCAGACCTAGACGTCCAGGTCCGCGCCAAGGGCCAATACGCCTTCGT
TATGCTATACAACATCCTATACGGCTTCACCTGGGGTCCAATGCCATGGC
TGCTACCAGCTGAAATCTTCCCCTTGCGTGGCCGCAGTAAAGGAATGGCT
CTGGCTACTACCAGCAACTGGATCTTCAACTTCATCATCGGCATGGTATC
TCCGGATGCGTTCGCAGGTATCAACGGATACTTCTACGTTGTTATTGCTG
GGTTCTGTCTCTTCTCTGCAGGCCTGGTACACTTCTACTATGTTGAGACG
GCCAATAGCACGCTGGAGGAAGTTGCAGAGTTGTTTGGCGATACAGCGTT
TGCAGATGCTGATGGGGAGGCGAGGGAGGCTTCTGACGTGCGGATAGATT
ATAGGAAGGATGTTGTGTGAATGGCTACCAAAATGTCCTCTCTACCGGCG
GATAATGCCGCTTTGACTCGCACTGCACAGGCCGTGGCTGCTCGGGAAGT
AGAGCAGCAGAGCTGGCTGGAGAGAAAGCTGAAGCCGACGAAGGTGAGAG
CTTGGTATCCCTTCAAGGGAACCCCATTGCTCTACGCGACATGTGGTTTC
GGCAGTCTGGGTGATGCCCTGTTTGGGTACAACTCTGGAATCATGTCAGG
TCTCCTCGTCAATCCTGCTTTTGTAGCTCGCTTCTTCAAAGACTACGGCG
GTGCTGACGGCTCAACAACCGGAGTCGATCCTTCGATCACCGGGATAGCT
GTTGCTTGTCTACAAGCGTCCGCAGCGGTGGGTGCACTCCTTGCAGGACG
CTTGGGCGATATGATGGGGCGCAAGCGATGTGTTCGTCTTGGCGGGTTCA
TCTACTTTTTCAGTGCGTTCATTCAGATCTTCGCGCCTGGGTTTGGCACC
TTCATTGCTGGTCGCACCATTCAAGGTCTAGGTGTTGGGTTTCTTTCCAT
GACAGTACCTATCATTCAGACTGAGATTGCCGCCCCGCATCGTCGTGGTT
TAATGGTGGGAATTGAATACACGTTTCAGATTGCAGGATACATGCTTTCA
TGTTGGGTAGATTATGGATTTAATTTTCTTTTGCCCAGTGAAATGTCCTG
GCAAGGTCCATTCATCATCCAAATTGCTCTCTCCTTCATTCTTCTGGCCA
TGTCGTTCTTTCTCCCCGAGACACCTCGTTGGCTGGCCAAAAACGGATTC
ATGCAAGAAAGCTTGCAGACGGTCGCTGACCTTCACGCCAATGGCGATAC
TCAAGCGGAACATGTGCAGCAGGTGTTTGTGGAAATCGAAGAAGCAGTTA
TCTTCGAAACCAACTTAGGAAAGTCATCGTGGATGGAAATGTTCACCCGA
TACCGTAAGCGGACCATCGTCGGAGTAACTGTCCAAATGTTTGCACAACT
TAACGGAATCAACATCATCTCCTTTTACCTTCCCAGCACACTTGCTACCG
CCGGCTTCGATGAGCGAAAATCCCTTCTGTACACCGCAGCCAATGCACTA
CCTTACACTGCGGCCACAATTTCGACTTGGTGGTTAGCAGACCGATGGGG
ACGGAAACCATTACTAATCCTTGGAGGTATCGGAATGGCAGTCCTGCTTG
GCATCGTCTGCGCCTTCACCGAAGCAGACCTAGACGTCCAGGTCCGCGCC
AAGGGCCAATACGCCTTCGTTATGCTATACAACATCCTATACGGCTTCAC
CTGGGGTCCAATGCCATGGCTGCTACCAGCTGAAATCTTCCCCTTGCGTG
GCCGCAGTAAAGGAATGGCTCTGGCTACTACCAGCAACTGGATCTTCAAC
TTCATCATCGGCATGGTATCTCCGGATGCGTTCGCAGGTATCAACGGATA
CTTCTACGTTGTTATTGCTGGGTTCTGTCTCTTCTCTGCAGGCCTGGTAC
ACTTCTACTATGTTGAGACGGCCAATAGCACGCTGGAGGAAGTTGCAGAG
TTGTTTGGCGATACAGCGTTTGCAGATGCTGATGGGGAGGCGAGGGAGGC
TTCTGACGTGCGGATAGATTATAGGAAGGATGTTGTGTGAATGGCTACCA
AAATGTCCTCTCTACCGGCGGATAATGCCGCTTTGACTCGCACTGCACAG
GCCGTGGCTGCTCGGGAAGTAGAGCAGCAGAGCTGGCTGGAGAGAAAGCT
GAAGCCGACGAAGGTGAGAGCTTGGTATCCCTTCAAGGGAACCCCATTGC
TCTACGCGACATGTGGTTTCGGCAGTCTGGGTGATGCCCTGTTTGGGTAC
AACTCTGGAATCATGTCAGGTCTCCTCGTCAATCCTGCTTTTGTAGCTCG
CTTCTTCAAAGACTACGGCGGTGCTGACGGCTCAACAACCGGAGTCGATC
CTTCGATCACCGGGATAGCTGTTGCTTGTCTACAAGCGTCCGCAGCGGTG
GGTGCACTCCTTGCAGGACGCTTGGGCGATATGATGGGGCGCAAGCGATG
TGTTCGTCTTGGCGGGTTCATCTACTTTTTCAGTGCGTTCATTCAGATCT
TCGCGCCTGGGTTTGGCACCTTCATTGCTGGTCGCACCATTCAAGGTCTA
GGTGTTGGGTTTCTTTCCATGACAGTACCTATCATTCAGACTGAGATTGC
CGCCCCGCATCGTCGTGGTTTAATGGTGGGAATTGAATACACGTTTCAGA
TTGCAGGATACATGCTTTCATGTTGGGTAGATTATGGATTTAATTTTCTT
TTGCCCAGTGAAATGTCCTGGCAAGGTCCATTCATCATCCAAATTGCTCT
CTCCTTCATTCTTCTGGCCATGTCGTTCTTTCTCCCCGAGACACCTCGTT
GGCTGGCCAAAAACGGATTCATGCAAGAAAGCTTGCAGACGGTCGCTGAC
CTTCACGCCAATGGCGATACTCAAGCGGAACATGTGCAGCAGGTGTTTGT
GGAAATCGAAGAAGCAGTTATCTTCGAAACCAACTTAGGAAAGTCATCGT
GGATGGAAATGTTCACCCGATACCGTAAGCGGACCATCGTCGGAGTAACT
GTCCAAATGTTTGCACAACTTAACGGAATCAACATCATCTCCTTTTACCT
TCCCAGCACACTTGCTACCGCCGGCTTCGATGAGCGAAAATCCCTTCTGT
ACACCGCAGCCAATGCACTACCTTACACTGCGGCCACAATTTCGACTTGG
TGGTTAGCAGACCGATGGGGACGGAAACCATTACTAATCCTTGGAGGTAT
CGGAATGGCAGTCCTGCTTGGCATCGTCTGCGCCTTCACCGAAGCAGACC
TAGACGTCCAGGTCCGCGCCAAGGGCCAATACGCCTTCGTTATGCTATAC
AACATCCTATACGGCTTCACCTGGGGTCCAATGCCATGGCTGCTACCAGC
TGAAATCTTCCCCTTGCGTGGCCGCAGTAAAGGAATGGCTCTGGCTACTA
CCAGCAACTGGATCTTCAACTTCATCATCGGCATGGTATCTCCGGATGCG
TTCGCAGGTATCAACGGATACTTCTACGTTGTTATTGCTGGGTTCTGTCT
CTTCTCTGCAGGCCTGGTACACTTCTACTATGTTGAGACGGCCAATAGCA
CGCTGGAGGAAGTTGCAGAGTTGTTTGGCGATACAGCGTTTGCAGATGCT
GATGGGGAGGCGAGGGAGGCTTCTGACGTGCGGATAGATTATAGGAAGGA
TGTTGTGTGAATGGCTACCAAAATGTCCTCTCTACCGGCGGATAATGCCG
CTTTGACTCGCACTGCACAGGCCGTGGCTGCTCGGGAAGTAGAGCAGCAG
AGCTGGCTGGAGAGAAAGCTGAAGCCGACGAAGGTGAGAGCTTGGTATCC
CTTCAAGGGAACCCCATTGCTCTACGCGACATGTGGTTTCGGCAGTCTGG
GTGATGCCCTGTTTGGGTACAACTCTGGAATCATGTCAGGTCTCCTCGTC
AATCCTGCTTTTGTAGCTCGCTTCTTCAAAGACTACGGCGGTGCTGACGG
CTCAACAACCGGAGTCGATCCTTCGATCACCGGGATAGCTGTTGCTTGTC
TACAAGCGTCCGCAGCGGTGGGTGCACTCCTTGCAGGACGCTTGGGCGAT
ATGATGGGGCGCAAGCGATGTGTTCGTCTTGGCGGGTTCATCTACTTTTT
CAGTGCGTTCATTCAGATCTTCGCGCCTGGGTTTGGCACCTTCATTGCTG
GTCGCACCATTCAAGGTCTAGGTGTTGGGTTTCTTTCCATGACAGTACCT
ATCATTCAGACTGAGATTGCCGCCCCGCATCGTCGTGGTTTAATGGTGGG
AATTGAATACACGTTTCAGATTGCAGGATACATGCTTTCATGTTGGGTAG
ATTATGGATTTAATTTTCTTTTGCCCAGTGAAATGTCCTGGCAAGGTCCA
TTCATCATCCAAATTGCTCTCTCCTTCATTCTTCTGGCCATGTCGTTCTT
TCTCCCCGAGACACCTCGTTGGCTGGCCAAAAACGGATTCATGCAAGAAA
GCTTGCAGACGGTCGCTGACCTTCACGCCAATGGCGATACTCAAGCGGAA
CATGTGCAGCAGGTGTTTGTGGAAATCGAAGAAGCAGTTATCTTCGAAAC
CAACTTAGGAAAGTCATCGTGGATGGAAATGTTCACCCGATACCGTAAGC
GGACCATCGTCGGAGTAACTGTCCAAATGTTTGCACAACTTAACGGAATC
AACATCATCTCCTTTTACCTTCCCAGCACACTTGCTACCGCCGGCTTCGA
TGAGCGAAAATCCCTTCTGTACACCGCAGCCAATGCACTACCTTACACTG
CGGCCACAATTTCGACTTGGTGGTTAGCAGACCGATGGGGACGGAAACCA
TTACTAATCCTTGGAGGTATCGGAATGGCAGTCCTGCTTGGCATCGTCTG
CGCCTTCACCGAAGCAGACCTAGACGTCCAGGTCCGCGCCAAGGGCCAAT
ACGCCTTCGTTATGCTATACAACATCCTATACGGCTTCACCTGGGGTCCA
ATGCCATGGCTGCTACCAGCTGAAATCTTCCCCTTGCGTGGCCGCAGTAA
AGGAATGGCTCTGGCTACTACCAGCAACTGGATCTTCAACTTCATCATCG
GCATGGTATCTCCGGATGCGTTCGCAGGTATCAACGGATACTTCTACGTT
GTTATTGCTGGGTTCTGTCTCTTCTCTGCAGGCCTGGTACACTTCTACTA
TGTTGAGACGGCCAATAGCACGCTGGAGGAAGTTGCAGAGTTGTTTGGCG
ATACAGCGTTTGCAGATGCTGATGGGGAGGCGAGGGAGGCTTCTGACGTG
CGGATAGATTATAGGAAGGATGTTGTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004634-T1.utr5p1 | KJC3_004634-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004634-T1.utr3p1 | KJC3_004634-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR005829 |
| DBxref | InterPro:IPR005828 |
| DBxref | InterPro:IPR003663 |
| DBxref | PFAM:PF00083 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:278005..280324 + |
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