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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:287228..289216+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004638-T1 ID=KJC3_004638-T1|Name=KJC3_004638-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1989bp|location=Sequence derived from alignment at ch4:287228..289216+ (Aspergillus niger KJC3)
GCCGATCATCCACGCAACTAAACCGCACTGGGCAGGTACCATCTGTCCGT
TCAAACAGCTTCACCCTCAACACGTTCCACACTGCAATCAACAGTAAACC
TTCATCTCCAGCCCGGGGCGTTGCAGACCGCTCAACTCAGGTTCCGCTCT
CTCCAGCTGCACCTGATGGCTTTCCCCCTTTCTTCTCGATCTTTCCGGTC
GAACCTCTCTGCCTCCTTGTGCAGTTTTGCATCATCGCAACCACCACACT
AATTTCTCAAATCTGAACCCCGCTTCTCCTATTTCCAACGGTGCTGGGTC
TCCTGGTTTCGGTTCATGGAAAACACCCCCTTGCACTGCCCCAACCGTTC
GTGTGCCCCGTACGGAGGAGATCTCCGCAACCGTCCACAGATCTCGGCTC
CCGATCGCCGCCATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCAC
TGAGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCTT
CTGTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGAC
GATGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAATCAC
CTTGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCTATC
ACTCGTATCGTGATGGAGCCTACTGGGTGGGTTGTTCGGCTTCGAGGGAG
TTGTCCACAGCTGTGGGCTAACGGATTACGATTCCACCTGCAGGGCCCCA
ACGATGACATCGCCAATGAACAGCAAGATCTGGCGCATCATATGTACTGT
CTGACTCTCGACGGGAAGCTACACCTAGCACCCATTTCGAATCCACAGGT
ATGGCTGGCGTTGCTTGAAGCATCTTGCAGGCTTTTTTGAGGTCTCCTGA
CTCTTGGAAAGCCCGAGTCGACAACTGTCTAAGAATGAATCGCAGGAAAT
CCTTGATGTGGGTACGGGAACCGGGATATGGGCTACGTGCGTGATCACTA
TTGCTTCCGTCGTTCCTACCATGTACCGATTACTGACTTTTGGCTCAAGC
GACATGGCAGATGAATATCCCAGTGCCAAAGTTACCGGAGTAGACTTATC
TCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTGTTTGAGATTGACG
ATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTTCGATTTTATTCAC
GTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACGAGTTCTTTCGGCA
ATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAGGTGGTAGAGCATT
CGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCCAAATCACTTCTAC
CGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGCAGTTTGGCAAAAC
CTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGGGATGCAGGTTTTG
TTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAACGCGTAGGTCTTG
CTCCTCTGTTTCCGCGTATCTCTTCTGGCTGACGACTATAACAGGTGGAG
TGCAGACCCCAAGCTCCATGAACTTGTAAGTACTTGTCCTTTGTCAGTGC
TGCTACTGCTAACACTGTCTAGGGCCGCTGGAACCAGCTTCGACTGCACG
GTGGGGTAGAGGGCTTCATGCTTCGTCTTCTCACTTCCACGCTGGAATGG
TCATACGAGCGAGCGCAGGTGTTCCTCGCTCAAATGCGCGCCTCCCTGCG
CGACTACCAGACCCACGCCTATCTACCAGTGACCGTTGTCTACGCTCGGA
AGCCTGAGAATGGTGCTATTTCCGATAGGCTGACGGTCAACTGGTCTCAC
TGACTTATGTATCTGTATACTTCGCTTTATACCCCATGACTGATGTACAA
TATGATGAATAATGAGTTACAAGCGTTTAAGATGAGAACTGTACCACGAT
ATGATTATTTGGTTACAATAGCAAGTGGTTATTCGCAAC back to topCoding sequence (CDS) from alignment at ch4:287228..289216+ >KJC3_004638-T1 ID=KJC3_004638-T1|Name=KJC3_004638-T1|organism=Aspergillus niger KJC3|type=CDS|length=6678bp|location=Sequence derived from alignment at ch4:287228..289216+ (Aspergillus niger KJC3)
ATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCACTGAGATCCCTTT
GAGCATCAGCACAGATACCCCACACCGTGTCTATTCTTCTGTCGATATGT
CAACCCGCATGAGCGATGGCGAGGACAACATCGCGGACGATGACTCCGCG
TACGGCGAGGACACCTTGATCGGCGATGACACAATCACCTTGTCCACTTA
CATCACCGACTACCGATATGAGTATGGCCGTCGCTATCACTCGTATCGTG
ATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAATGAACAGCAAGAT
CTGGCGCATCATATGTACTGTCTGACTCTCGACGGGAAGCTACACCTAGC
ACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGTACGGGAACCGGGA
TATGGGCTACCGACATGGCAGATGAATATCCCAGTGCCAAAGTTACCGGA
GTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTGTT
TGAGATTGACGATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTTCG
ATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACGAG
TTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAGGT
GGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCCAA
ATCACTTCTACCGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGCAG
TTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGGGA
TGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAACG
CGTGGAGTGCAGACCCCAAGCTCCATGAACTTGGCCGCTGGAACCAGCTT
CGACTGCACGGTGGGGTAGAGGGCTTCATGCTTCGTCTTCTCACTTCCAC
GCTGGAATGGTCATACGAGCGAGCGCAGGTGTTCCTCGCTCAAATGCGCG
CCTCCCTGCGCGACTACCAGACCCACGCCTATCTACCAGTGACCGTTGTC
TACGCTCGGAAGCCTGAGAATGGTGCTATTTCCGATAGGCTGACGGTCAA
CTGGTCTCACTGAATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCA
CTGAGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCT
TCTGTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGA
CGATGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAATCA
CCTTGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCTAT
CACTCGTATCGTGATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAA
TGAACAGCAAGATCTGGCGCATCATATGTACTGTCTGACTCTCGACGGGA
AGCTACACCTAGCACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGT
ACGGGAACCGGGATATGGGCTACCGACATGGCAGATGAATATCCCAGTGC
CAAAGTTACCGGAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTC
CGAACTGCGTGTTTGAGATTGACGATGTGACGCTCCCGTGGACCTATGCG
GAAAACCAGTTCGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACC
TGATTGGGACGAGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCG
GTTACATTGAGGTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGG
ACCGTGCCCCCAAATCACTTCTACCGACTCTGGGGACAAACCGTCATTGG
TGCCGGAGAGCAGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCG
CACGTCTGAGGGATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAG
TGGCCAATGAACGCGTGGAGTGCAGACCCCAAGCTCCATGAACTTGGCCG
CTGGAACCAGCTTCGACTGCACGGTGGGGTAGAGGGCTTCATGCTTCGTC
TTCTCACTTCCACGCTGGAATGGTCATACGAGCGAGCGCAGGTGTTCCTC
GCTCAAATGCGCGCCTCCCTGCGCGACTACCAGACCCACGCCTATCTACC
AGTGACCGTTGTCTACGCTCGGAAGCCTGAGAATGGTGCTATTTCCGATA
GGCTGACGGTCAACTGGTCTCACTGAATGACCTCTTCCCGCTGCGAGGAA
CATAGCCTTACCACTGAGATCCCTTTGAGCATCAGCACAGATACCCCACA
CCGTGTCTATTCTTCTGTCGATATGTCAACCCGCATGAGCGATGGCGAGG
ACAACATCGCGGACGATGACTCCGCGTACGGCGAGGACACCTTGATCGGC
GATGACACAATCACCTTGTCCACTTACATCACCGACTACCGATATGAGTA
TGGCCGTCGCTATCACTCGTATCGTGATGGAGCCTACTGGGGCCCCAACG
ATGACATCGCCAATGAACAGCAAGATCTGGCGCATCATATGTACTGTCTG
ACTCTCGACGGGAAGCTACACCTAGCACCCATTTCGAATCCACAGGAAAT
CCTTGATGTGGGTACGGGAACCGGGATATGGGCTACCGACATGGCAGATG
AATATCCCAGTGCCAAAGTTACCGGAGTAGACTTATCTCCGATTCAGCCC
CCATTCGTCCCTCCGAACTGCGTGTTTGAGATTGACGATGTGACGCTCCC
GTGGACCTATGCGGAAAACCAGTTCGATTTTATTCACGTGCGGGAATTGT
TTGGCTGCATACCTGATTGGGACGAGTTCTTTCGGCAATGCTGGCGTTGC
CTCAAACCCGGCGGTTACATTGAGGTGGTAGAGCATTCGGTCGAGCCGGT
CGCGGATGATGGGACCGTGCCCCCAAATCACTTCTACCGACTCTGGGGAC
AAACCGTCATTGGTGCCGGAGAGCAGTTTGGCAAAACCTTCAAAATCTGG
GAACAGAGCGCCGCACGTCTGAGGGATGCAGGTTTTGTTGGCGTTGTGGA
AAACAAGTTCCAGTGGCCAATGAACGCGTGGAGTGCAGACCCCAAGCTCC
ATGAACTTGGCCGCTGGAACCAGCTTCGACTGCACGGTGGGGTAGAGGGC
TTCATGCTTCGTCTTCTCACTTCCACGCTGGAATGGTCATACGAGCGAGC
GCAGGTGTTCCTCGCTCAAATGCGCGCCTCCCTGCGCGACTACCAGACCC
ACGCCTATCTACCAGTGACCGTTGTCTACGCTCGGAAGCCTGAGAATGGT
GCTATTTCCGATAGGCTGACGGTCAACTGGTCTCACTGAATGACCTCTTC
CCGCTGCGAGGAACATAGCCTTACCACTGAGATCCCTTTGAGCATCAGCA
CAGATACCCCACACCGTGTCTATTCTTCTGTCGATATGTCAACCCGCATG
AGCGATGGCGAGGACAACATCGCGGACGATGACTCCGCGTACGGCGAGGA
CACCTTGATCGGCGATGACACAATCACCTTGTCCACTTACATCACCGACT
ACCGATATGAGTATGGCCGTCGCTATCACTCGTATCGTGATGGAGCCTAC
TGGGGCCCCAACGATGACATCGCCAATGAACAGCAAGATCTGGCGCATCA
TATGTACTGTCTGACTCTCGACGGGAAGCTACACCTAGCACCCATTTCGA
ATCCACAGGAAATCCTTGATGTGGGTACGGGAACCGGGATATGGGCTACC
GACATGGCAGATGAATATCCCAGTGCCAAAGTTACCGGAGTAGACTTATC
TCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTGTTTGAGATTGACG
ATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTTCGATTTTATTCAC
GTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACGAGTTCTTTCGGCA
ATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAGGTGGTAGAGCATT
CGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCCAAATCACTTCTAC
CGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGCAGTTTGGCAAAAC
CTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGGGATGCAGGTTTTG
TTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAACGCGTGGAGTGCA
GACCCCAAGCTCCATGAACTTGGCCGCTGGAACCAGCTTCGACTGCACGG
TGGGGTAGAGGGCTTCATGCTTCGTCTTCTCACTTCCACGCTGGAATGGT
CATACGAGCGAGCGCAGGTGTTCCTCGCTCAAATGCGCGCCTCCCTGCGC
GACTACCAGACCCACGCCTATCTACCAGTGACCGTTGTCTACGCTCGGAA
GCCTGAGAATGGTGCTATTTCCGATAGGCTGACGGTCAACTGGTCTCACT
GAATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCACTGAGATCCCT
TTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCTTCTGTCGATAT
GTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGACGATGACTCCG
CGTACGGCGAGGACACCTTGATCGGCGATGACACAATCACCTTGTCCACT
TACATCACCGACTACCGATATGAGTATGGCCGTCGCTATCACTCGTATCG
TGATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAATGAACAGCAAG
ATCTGGCGCATCATATGTACTGTCTGACTCTCGACGGGAAGCTACACCTA
GCACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGTACGGGAACCGG
GATATGGGCTACCGACATGGCAGATGAATATCCCAGTGCCAAAGTTACCG
GAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTG
TTTGAGATTGACGATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTT
CGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACG
AGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAG
GTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCC
AAATCACTTCTACCGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGC
AGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGG
GATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAA
CGCGTGGAGTGCAGACCCCAAGCTCCATGAACTTGGCCGCTGGAACCAGC
TTCGACTGCACGGTGGGGTAGAGGGCTTCATGCTTCGTCTTCTCACTTCC
ACGCTGGAATGGTCATACGAGCGAGCGCAGGTGTTCCTCGCTCAAATGCG
CGCCTCCCTGCGCGACTACCAGACCCACGCCTATCTACCAGTGACCGTTG
TCTACGCTCGGAAGCCTGAGAATGGTGCTATTTCCGATAGGCTGACGGTC
AACTGGTCTCACTGAATGACCTCTTCCCGCTGCGAGGAACATAGCCTTAC
CACTGAGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATT
CTTCTGTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCG
GACGATGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAAT
CACCTTGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCT
ATCACTCGTATCGTGATGGAGCCTACTGGGGCCCCAACGATGACATCGCC
AATGAACAGCAAGATCTGGCGCATCATATGTACTGTCTGACTCTCGACGG
GAAGCTACACCTAGCACCCATTTCGAATCCACAGGAAATCCTTGATGTGG
GTACGGGAACCGGGATATGGGCTACCGACATGGCAGATGAATATCCCAGT
GCCAAAGTTACCGGAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCC
TCCGAACTGCGTGTTTGAGATTGACGATGTGACGCTCCCGTGGACCTATG
CGGAAAACCAGTTCGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATA
CCTGATTGGGACGAGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGG
CGGTTACATTGAGGTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATG
GGACCGTGCCCCCAAATCACTTCTACCGACTCTGGGGACAAACCGTCATT
GGTGCCGGAGAGCAGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGC
CGCACGTCTGAGGGATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCC
AGTGGCCAATGAACGCGTGGAGTGCAGACCCCAAGCTCCATGAACTTGGC
CGCTGGAACCAGCTTCGACTGCACGGTGGGGTAGAGGGCTTCATGCTTCG
TCTTCTCACTTCCACGCTGGAATGGTCATACGAGCGAGCGCAGGTGTTCC
TCGCTCAAATGCGCGCCTCCCTGCGCGACTACCAGACCCACGCCTATCTA
CCAGTGACCGTTGTCTACGCTCGGAAGCCTGAGAATGGTGCTATTTCCGA
TAGGCTGACGGTCAACTGGTCTCACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004638-T1.utr5p1 | KJC3_004638-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004638-T1.utr3p1 | KJC3_004638-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | PFAM:PF13649 |
| DBxref | PFAM:PF13489 |
| DBxref | PFAM:PF08242 |
| DBxref | PFAM:PF08241 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:287228..289216 + |
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