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KJC3_004765-T1, KJC3_004765-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004765-T1
Unique NameKJC3_004765-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:653376..654460+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004765-T1 ID=KJC3_004765-T1|Name=KJC3_004765-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1085bp|location=Sequence derived from alignment at ch4:653376..654460+ (Aspergillus niger KJC3)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAAGATTCCCCTCTCAATTCTCAAATTGCGGGGATGGGAAGGATACT
AATATGTGGATGAATAGGTAACAAGATCCTCCGTATCTTGAAGTCCAACG
GTACGACATCACCGACATGTTCCCTTTCACCAGTCGCACCAGTTATATGA
GCATGTTGTGGATGTGAATATGGCAGCGGAATATGGAATAGGCGCGAGCA
GAGCAGCAGCTAGGACCCGGATTGGAATATATCCGGCGATTCGATTTCAG
CCAGGTCACGGGTTTGATTGATGGACAACGATACGATGTATTCTGCACGG
AAGTGAAGAAGAAGGAAGAGAACGAGGTTGAAACATACCCGGAATCGTTC
TCGACTCCGTATCGACATGGACACTCGCAAACCTACAGCCAATCGCAATC
GCAGCAATCCCGGCGCTCTCTGCCTCCCACCATCTCTACACCGCACACCC
ACAACATGTCCATAAAACTGGAGGGCACCAGAAGCAAAACTTCAACACCA
ACTCGCAGAAATGCAGTTGGATGTTGGAAGTTTCTTTTGCGTGATCCCGT
ATGCCTCTGCTTGGTCAAACCACAGGCTGACAGAGTGATCTATTAAACAG
GCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGTA
TGCCATTCCCCATTTATCTGAAAACACGATGGTAGATTGAATACTAACAA
ACTGGTATTAGGCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAG
GACAAGGACAGCAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCG
TCTGTCTCGTTACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTT
ACGAGTCCGCCACTGCTTCCACCCTCGTTGCTTAA
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Coding sequence (CDS) from alignment at ch4:653376..654460+

>KJC3_004765-T1 ID=KJC3_004765-T1|Name=KJC3_004765-T1|organism=Aspergillus niger KJC3|type=CDS|length=1824bp|location=Sequence derived from alignment at ch4:653376..654460+ (Aspergillus niger KJC3)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCCCCGAGC
TCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTCCGCAAG
CACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCTGATTCT
CATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCGTCGGTG
TCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACCCTCGTT
GCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGC
TCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGC
AGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCC
CAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGAC
TGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCC
CCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTC
CGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCT
GATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCG
TCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACC
CTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTC
CTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCA
CCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACC
CCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGT
CAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCC
TTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTC
GCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTT
CCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACA
AGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCT
TCCACCCTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCAT
TTCGTCCTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGG
CTTCCACCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGT
GCTACCCCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGC
CCAGGTCAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCA
ACGGCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAG
GCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAG
CAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTT
ACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCC
ACTGCTTCCACCCTCGTTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS13KJC3_004765Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004765-T1.exon1KJC3_004765-T1.exon1Aspergillus niger KJC3exon
KJC3_004765-T1.exon2KJC3_004765-T1.exon2Aspergillus niger KJC3exon
KJC3_004765-T1.exon3KJC3_004765-T1.exon3Aspergillus niger KJC3exon
KJC3_004765-T1.exon4KJC3_004765-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004765-T1.cdsKJC3_004765-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004765-T1KJC3_004765-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926514P
DBxrefInterPro:IPR009068
DBxrefInterPro:IPR023029
DBxrefInterPro:IPR012606
DBxrefInterPro:IPR000589
DBxrefPFAM:PF00312
DBxrefPFAM:PF08069
Productribosomal 40S subunit protein S13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:653376..654460 +
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