|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:716981..718237+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004788-T1 ID=KJC3_004788-T1|Name=KJC3_004788-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1257bp|location=Sequence derived from alignment at ch4:716981..718237+ (Aspergillus niger KJC3)
ATCGTGGAAAAAGACCCGGCCTGGCGACCTCTTCCCTTTCACCCAACACT
CCGAATTCTGGCCCTTCCTCTATCCAATGGCTTCCGTACTATCGACTCGC
GCGGTCAGGACCGCCTCCTGCTCCGCATGCCGCTCCCTCGCTCGTCCCAA
CTCCATCGCAGCCGGTCTCCTTCCGCGGCGAGGACTCTCGACGGCCACCG
AAGATGCAGCAGTCAACCATGCAGACAAGCCCCGGTGGTCGTACACGCCG
CCTCGTGCCAAAGCGCCGTTCTCCTTGAGACTCAACTCCAACCGCCCCGA
GTTCCCCGTGAATTCAGATCCCAAGGTTCTGGACCGGTTCTACATCCTCA
TGCTCGGAAACGACGGCGACAAGATGCTCTCGGAGGAAACCAAGTGGCTC
GCAGTGACACACAAGAGTTTTGATCAGGGCCGGAGAGGTTTCAACGACCG
TTTGGCCTTCCTGGGTATGTCAAGTGTTGCTGTGCAATGAATGGTAACAG
GATTGGATACTAATGCGGATGGGGTTGTACACAGGCAAGCGTATTGTTCA
GCTGCAGGCTTCGTTGGCTTTGGTCCAGAGTCCTAGCAACGCTGCTAACT
CTGCCACCCCCGATGCGTATGGCCGGGTCCCCTTCACTCACCCGGCTTTA
GATAGCCTGGACAACCTCGACTACAACACGAAGAGCTTCCTTACGAGCAA
GACGAAGCTGTCGGAACTTGCTCACAAGTATGACATGCAGAGAGTTGTGA
GATGGTGCCCTCGGAAGGTGAGTCTACGGTTCCCGTGCATTAAGACGACA
TTCGGACACCCTGCGCTGCTGGGCTTTTGATATTGTCTTGTGAGTTGGTC
AATTGGATCCCCTGCTAACAGCGGCGTGTTTACGTGTAGCCCAACAACCT
CGAAAGCTCTGGAATGGACCTCGTTCTCGCCCACACGATGTACGCTGTGA
TCGGTGCCATCTCCCTGGAGAAGGGCAATGCTGTTGCGAACAAGGTGGCC
CGTGAGCGCATATTAGCACCTCTGGGATTCAAGATCGCGGCTTGATTTGG
GTGATTGATTTATGGGAAATGGCCGCAGGTGCATTTTCAAGGCGTTACTT
CCTTTTTCTCTTTTCACCTTCCCCTTGTTTCTTTGTGCCCTGGATGTTTT
GTGTATGTGTTGGGGCTTTTTCTTCATCCGCCATATATTATGTATTTTTA
TCTACGACTTGTCTTATATAGTGACTGCAAATACCACCGGAAGTTCTGTC
TTCTCTC back to topCoding sequence (CDS) from alignment at ch4:716981..718237+ >KJC3_004788-T1 ID=KJC3_004788-T1|Name=KJC3_004788-T1|organism=Aspergillus niger KJC3|type=CDS|length=2331bp|location=Sequence derived from alignment at ch4:716981..718237+ (Aspergillus niger KJC3)
ATGGCTTCCGTACTATCGACTCGCGCGGTCAGGACCGCCTCCTGCTCCGC
ATGCCGCTCCCTCGCTCGTCCCAACTCCATCGCAGCCGGTCTCCTTCCGC
GGCGAGGACTCTCGACGGCCACCGAAGATGCAGCAGTCAACCATGCAGAC
AAGCCCCGGTGGTCGTACACGCCGCCTCGTGCCAAAGCGCCGTTCTCCTT
GAGACTCAACTCCAACCGCCCCGAGTTCCCCGTGAATTCAGATCCCAAGG
TTCTGGACCGGTTCTACATCCTCATGCTCGGAAACGACGGCGACAAGATG
CTCTCGGAGGAAACCAAGTGGCTCGCAGTGACACACAAGAGTTTTGATCA
GGGCCGGAGAGGTTTCAACGACCGTTTGGCCTTCCTGGGCAAGCGTATTG
TTCAGCTGCAGGCTTCGTTGGCTTTGGTCCAGAGTCCTAGCAACGCTGCT
AACTCTGCCACCCCCGATGCGTATGGCCGGGTCCCCTTCACTCACCCGGC
TTTAGATAGCCTGGACAACCTCGACTACAACACGAAGAGCTTCCTTACGA
GCAAGACGAAGCTGTCGGAACTTGCTCACAAGTATGACATGCAGAGAGTT
GTGAGATGGTGCCCTCGGAAGCCCAACAACCTCGAAAGCTCTGGAATGGA
CCTCGTTCTCGCCCACACGATGTACGCTGTGATCGGTGCCATCTCCCTGG
AGAAGGGCAATGCTGTTGCGAACAAGGTGGCCCGTGAGCGCATATTAGCA
CCTCTGGGATTCAAGATCGCGGCTTGAATGGCTTCCGTACTATCGACTCG
CGCGGTCAGGACCGCCTCCTGCTCCGCATGCCGCTCCCTCGCTCGTCCCA
ACTCCATCGCAGCCGGTCTCCTTCCGCGGCGAGGACTCTCGACGGCCACC
GAAGATGCAGCAGTCAACCATGCAGACAAGCCCCGGTGGTCGTACACGCC
GCCTCGTGCCAAAGCGCCGTTCTCCTTGAGACTCAACTCCAACCGCCCCG
AGTTCCCCGTGAATTCAGATCCCAAGGTTCTGGACCGGTTCTACATCCTC
ATGCTCGGAAACGACGGCGACAAGATGCTCTCGGAGGAAACCAAGTGGCT
CGCAGTGACACACAAGAGTTTTGATCAGGGCCGGAGAGGTTTCAACGACC
GTTTGGCCTTCCTGGGCAAGCGTATTGTTCAGCTGCAGGCTTCGTTGGCT
TTGGTCCAGAGTCCTAGCAACGCTGCTAACTCTGCCACCCCCGATGCGTA
TGGCCGGGTCCCCTTCACTCACCCGGCTTTAGATAGCCTGGACAACCTCG
ACTACAACACGAAGAGCTTCCTTACGAGCAAGACGAAGCTGTCGGAACTT
GCTCACAAGTATGACATGCAGAGAGTTGTGAGATGGTGCCCTCGGAAGCC
CAACAACCTCGAAAGCTCTGGAATGGACCTCGTTCTCGCCCACACGATGT
ACGCTGTGATCGGTGCCATCTCCCTGGAGAAGGGCAATGCTGTTGCGAAC
AAGGTGGCCCGTGAGCGCATATTAGCACCTCTGGGATTCAAGATCGCGGC
TTGAATGGCTTCCGTACTATCGACTCGCGCGGTCAGGACCGCCTCCTGCT
CCGCATGCCGCTCCCTCGCTCGTCCCAACTCCATCGCAGCCGGTCTCCTT
CCGCGGCGAGGACTCTCGACGGCCACCGAAGATGCAGCAGTCAACCATGC
AGACAAGCCCCGGTGGTCGTACACGCCGCCTCGTGCCAAAGCGCCGTTCT
CCTTGAGACTCAACTCCAACCGCCCCGAGTTCCCCGTGAATTCAGATCCC
AAGGTTCTGGACCGGTTCTACATCCTCATGCTCGGAAACGACGGCGACAA
GATGCTCTCGGAGGAAACCAAGTGGCTCGCAGTGACACACAAGAGTTTTG
ATCAGGGCCGGAGAGGTTTCAACGACCGTTTGGCCTTCCTGGGCAAGCGT
ATTGTTCAGCTGCAGGCTTCGTTGGCTTTGGTCCAGAGTCCTAGCAACGC
TGCTAACTCTGCCACCCCCGATGCGTATGGCCGGGTCCCCTTCACTCACC
CGGCTTTAGATAGCCTGGACAACCTCGACTACAACACGAAGAGCTTCCTT
ACGAGCAAGACGAAGCTGTCGGAACTTGCTCACAAGTATGACATGCAGAG
AGTTGTGAGATGGTGCCCTCGGAAGCCCAACAACCTCGAAAGCTCTGGAA
TGGACCTCGTTCTCGCCCACACGATGTACGCTGTGATCGGTGCCATCTCC
CTGGAGAAGGGCAATGCTGTTGCGAACAAGGTGGCCCGTGAGCGCATATT
AGCACCTCTGGGATTCAAGATCGCGGCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004525 | ribonuclease III activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004788-T1.utr5p1 | KJC3_004788-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004788-T1.utr3p1 | KJC3_004788-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036389 |
| DBxref | InterPro:IPR000999 |
| DBxref | PFAM:PF14622 |
| DBxref | PFAM:PF00636 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:716981..718237 + |
|
