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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:890266..891498+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004848-T1 ID=KJC3_004848-T1|Name=KJC3_004848-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1233bp|location=Sequence derived from alignment at ch4:890266..891498+ (Aspergillus niger KJC3)
GGGATGTAGTATATAGGTCAACATCATCACGAGAATAATGCGCGATGATT
GTCTCAACTTCAATTCCTTGAGCTGCCCTGGCCTCAACGTGAGTTTCAAT
TCTGATCAAGTCGACTAGTCTTGTTCCCGATAATCGTCGCCCGCGGATAT
GACGCAAACTTGGACCTTTCCGGGAGTTGCCGTCGTCACAGGAGCCGGTG
GCACAGGCACGTATACCTTCAAGTCCATCGCGGGGAAAGGAAAAAGCAAA
AATTTTAACCGTCTCGCAGGCATCGGTGCAGCCACAGCAAAAGCATTTGC
TTCGGCAGGATGTGAAAGAATCGCAATCACGGATCTTAATTCTGCCTCTC
TAGATCAGACTCGGGAGGCCATCCTCGCCTCTTACCCTCAGACGCGTCTT
CTAGTCAAGGCGGGTGATATATCCGATGAGAGCTTTGTCGAGTCATTCGT
CAGTGAGGTGGTGGATACATTTGGACGGCTGGATTATGCGGTCAATTGCG
CCGGAATCCTAGGAGACGCCATGCGGACAACCGAGACATCAACGGCGGTA
TTTGACCATATCAACAACATCAATTACCGGGGTGCTTGGTTCTGCTCTAG
AGCAGAGTTGAGACAAATGGTAGCACAGGATTCTTTACCGAGTCATGATC
CGAATCGCGTTCCTCAGCGAGGGGCTATTGTGAACGTTGCAAGCCAGCTG
GGAATCGTAGGGCGCCCGAGTGCTCGTAAGTTCACATTTTCTCCATCCCG
AATTTTCCAGGTCACTTGGATTGAGCTAACTGCGTCGGATTTGCTTCTAG
CTGCGTATTGTAGCTCCAAGGCTGCTGTGATTGCGATGACTCGCTCTGAT
GCAATCGACTACTCTGCGGAGGGCATCCGTGTAAATTGTGTCTGTCCGGG
TGTAATTGAGACTCCAATGACAACGTACAGTGAGGAAATTCGCGAGCACT
TTCAACCAGCAGTCGAGATTGCCCCAATGAAGAGGATGGGGAAACCGGAA
GAAGTGGCTGATTCCATACTCTTCTTGTGTTCGACTTTTGCCTCGTTTGT
GCAAGGACATGCGCTTGTTGTCGATGGAGGGTATATAATCAACTGATGAA
AAGCTTCTTCAACCATAATAATGATAATGACTAAGAATGAAATAAGATGA
ACAACAGATCTAGTGCCATTAGCATTCAGGAGACACGAGAGGAAATCGAA
CGTTATGCCAACATCTTGCAGTATGTACAGAAC back to topCoding sequence (CDS) from alignment at ch4:890266..891498+ >KJC3_004848-T1 ID=KJC3_004848-T1|Name=KJC3_004848-T1|organism=Aspergillus niger KJC3|type=CDS|length=2430bp|location=Sequence derived from alignment at ch4:890266..891498+ (Aspergillus niger KJC3)
ATGACGCAAACTTGGACCTTTCCGGGAGTTGCCGTCGTCACAGGAGCCGG
TGGCACAGGCATCGGTGCAGCCACAGCAAAAGCATTTGCTTCGGCAGGAT
GTGAAAGAATCGCAATCACGGATCTTAATTCTGCCTCTCTAGATCAGACT
CGGGAGGCCATCCTCGCCTCTTACCCTCAGACGCGTCTTCTAGTCAAGGC
GGGTGATATATCCGATGAGAGCTTTGTCGAGTCATTCGTCAGTGAGGTGG
TGGATACATTTGGACGGCTGGATTATGCGGTCAATTGCGCCGGAATCCTA
GGAGACGCCATGCGGACAACCGAGACATCAACGGCGGTATTTGACCATAT
CAACAACATCAATTACCGGGGTGCTTGGTTCTGCTCTAGAGCAGAGTTGA
GACAAATGGTAGCACAGGATTCTTTACCGAGTCATGATCCGAATCGCGTT
CCTCAGCGAGGGGCTATTGTGAACGTTGCAAGCCAGCTGGGAATCGTAGG
GCGCCCGAGTGCTCCTGCGTATTGTAGCTCCAAGGCTGCTGTGATTGCGA
TGACTCGCTCTGATGCAATCGACTACTCTGCGGAGGGCATCCGTGTAAAT
TGTGTCTGTCCGGGTGTAATTGAGACTCCAATGACAACGTACAGTGAGGA
AATTCGCGAGCACTTTCAACCAGCAGTCGAGATTGCCCCAATGAAGAGGA
TGGGGAAACCGGAAGAAGTGGCTGATTCCATACTCTTCTTGTGTTCGACT
TTTGCCTCGTTTGTGCAAGGACATGCGCTTGTTGTCGATGGAGGGTATAT
AATCAACTGAATGACGCAAACTTGGACCTTTCCGGGAGTTGCCGTCGTCA
CAGGAGCCGGTGGCACAGGCATCGGTGCAGCCACAGCAAAAGCATTTGCT
TCGGCAGGATGTGAAAGAATCGCAATCACGGATCTTAATTCTGCCTCTCT
AGATCAGACTCGGGAGGCCATCCTCGCCTCTTACCCTCAGACGCGTCTTC
TAGTCAAGGCGGGTGATATATCCGATGAGAGCTTTGTCGAGTCATTCGTC
AGTGAGGTGGTGGATACATTTGGACGGCTGGATTATGCGGTCAATTGCGC
CGGAATCCTAGGAGACGCCATGCGGACAACCGAGACATCAACGGCGGTAT
TTGACCATATCAACAACATCAATTACCGGGGTGCTTGGTTCTGCTCTAGA
GCAGAGTTGAGACAAATGGTAGCACAGGATTCTTTACCGAGTCATGATCC
GAATCGCGTTCCTCAGCGAGGGGCTATTGTGAACGTTGCAAGCCAGCTGG
GAATCGTAGGGCGCCCGAGTGCTCCTGCGTATTGTAGCTCCAAGGCTGCT
GTGATTGCGATGACTCGCTCTGATGCAATCGACTACTCTGCGGAGGGCAT
CCGTGTAAATTGTGTCTGTCCGGGTGTAATTGAGACTCCAATGACAACGT
ACAGTGAGGAAATTCGCGAGCACTTTCAACCAGCAGTCGAGATTGCCCCA
ATGAAGAGGATGGGGAAACCGGAAGAAGTGGCTGATTCCATACTCTTCTT
GTGTTCGACTTTTGCCTCGTTTGTGCAAGGACATGCGCTTGTTGTCGATG
GAGGGTATATAATCAACTGAATGACGCAAACTTGGACCTTTCCGGGAGTT
GCCGTCGTCACAGGAGCCGGTGGCACAGGCATCGGTGCAGCCACAGCAAA
AGCATTTGCTTCGGCAGGATGTGAAAGAATCGCAATCACGGATCTTAATT
CTGCCTCTCTAGATCAGACTCGGGAGGCCATCCTCGCCTCTTACCCTCAG
ACGCGTCTTCTAGTCAAGGCGGGTGATATATCCGATGAGAGCTTTGTCGA
GTCATTCGTCAGTGAGGTGGTGGATACATTTGGACGGCTGGATTATGCGG
TCAATTGCGCCGGAATCCTAGGAGACGCCATGCGGACAACCGAGACATCA
ACGGCGGTATTTGACCATATCAACAACATCAATTACCGGGGTGCTTGGTT
CTGCTCTAGAGCAGAGTTGAGACAAATGGTAGCACAGGATTCTTTACCGA
GTCATGATCCGAATCGCGTTCCTCAGCGAGGGGCTATTGTGAACGTTGCA
AGCCAGCTGGGAATCGTAGGGCGCCCGAGTGCTCCTGCGTATTGTAGCTC
CAAGGCTGCTGTGATTGCGATGACTCGCTCTGATGCAATCGACTACTCTG
CGGAGGGCATCCGTGTAAATTGTGTCTGTCCGGGTGTAATTGAGACTCCA
ATGACAACGTACAGTGAGGAAATTCGCGAGCACTTTCAACCAGCAGTCGA
GATTGCCCCAATGAAGAGGATGGGGAAACCGGAAGAAGTGGCTGATTCCA
TACTCTTCTTGTGTTCGACTTTTGCCTCGTTTGTGCAAGGACATGCGCTT
GTTGTCGATGGAGGGTATATAATCAACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004848-T1.utr5p1 | KJC3_004848-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004848-T1.utr3p1 | KJC3_004848-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF01370 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:890266..891498 + |
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