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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:891544..893371- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004849-T1 ID=KJC3_004849-T1|Name=KJC3_004849-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1828bp|location=Sequence derived from alignment at ch4:891544..893371- (Aspergillus niger KJC3)
GTCCAAATCTACTCACACATCATGTCGGTATTGTTCACTTCTATTTCGCC
GTATGTACTGAGTCCTCGATTCATGTTATCCCCGTTGTCTCCTCCACGAA
TTTGAACCTTACAGATCATCGACAGGGACAACCCGGTCAAGAGGGAAGAT
GCGGCCTCCCTTCTGCGCAATTTGGATCTCCATATTGACCAAGAAGATGA
GGAAGATTTTCATACCCTCCTGGCAGCCGTCCATGACTGCGCCGAAACCG
TGGCGAACCTGCCAGACTATCAGCCAGTCCCCGATCTAGATCGATACCCT
CGACATAATGTTCACCGTCCATCCTCAGAGGAACAAGTATTTGGGCAGGC
CTGGGCTCACAAGTTTCTGATCAAGGGCAATCCGGAGGGAGGGCTATTGA
CGGGGAAGACGATCAGCGTGAAGGATTGCATTGCCGTTGCAGGTGTACCA
CAGTTGCTTGGAAGTGATATCATTCCCTCTTGGACACCAATTACAGATGC
GACGGTTGTGACCCGAGTTCTCGATGCTGGTGCTGATATTCATGGTACTT
CGACTTGTGAAAACTACTGCCATTCCACGGCGTCTTTCACGAGTGCTCAA
GGAACCGTGGAGAACCCTTTCGCGACCGGATACTCAGCTGGCGGAAGCAC
CTCAGGAGGGGCAGCCTTGGTTGCAGCTGGTTTGGTTGACATTACGCTCG
GTGGAGACCAGGGTGGAAGCATTCGGGTTCCCTCCGCGTTTTGCGGTTGT
AGGTATCTCGGATAAATTGGCTTTCAGAAACATGGCTGACCGTGTCAACT
CAGGTGTCGGCTTGAAGCCTACATATGGGCTGGTGCCTTTCAGCGGTATT
GCTAGCGGAGATGCTATTGATGACCACACGGGCCCGCTTGCTCGTAATGT
TATCGACGTTGCCTCTTGCTTAGACGCTATCGCCGGCTATGATGGCATAG
ACGATCGATGCCTGGGGAGTCCTAAACACGGCTCTACCTCGTTCGCCAAG
TCGCTTCAAGCGGACGCTACGAGGCTCGACGGCTTCAAAATAGGAGTCTT
GAAGGAAGGATTTGAGCACACTGCTGTGGACCCCGCAGTCAAAGAGTCGG
TCATGGCGGCCACCCAGAAATTTGCGGAGCTTGGCGCAACAGTCGAGGAG
GTATCTCTTCCAGACCACTACCATGGGCCTGCTATATGGACCATTCAGCA
GCGTGTATCAGGCTCCTTGACGCTGCTTGGACAGGCACATGGCAGAAGGG
GGCTCTACATGACGGAGATGGAGCGTGAGAGACTGCCGTGGACGAAGGAA
GGCTTTCAAAGAGCCTTCCCAGCCACGAAGAACGTTATAATCAATGGCCT
CTATCTTACCTCGCGCTTTCCTGACTTGTACGGGAAATCAGTGAATATCG
GCCGAAGGCTTCGGGACCTCTACGAGGATCTGCTCCAGGAGTACGATGTG
GTTGTAATGCCAACCACTCCTGTTGTTGCACCAAGACATGGTGCACGAGG
CCTACCGGTCGAGTCTCTGAAGCCTAGCATGGGCTTGACAATCAACACAG
CAATTTTTGATGTTACGGGACACCCAGCGATGAGCATACCAGTGGGGTAC
GCTCCGGCCAAGGATGATCCCCAAGTCAAGCTCCCGGTCGGTATGCAGAT
TGTCGGAGGGTTGTGGCAGGAGTTTAAGGTACTCAAAGCGGGATATGCAT
GGGAGAAAAACTACGATTGGAAAGAGGTGGCGAGTCATTGATAGACACAG
TACATTATAGCTAGAATTTTATAGGATTTGGTCTGGGTGAGAAACGCTCA
TTGACTATATTTTGTGGGTAACTTGGAC back to topCoding sequence (CDS) from alignment at ch4:891544..893371- >KJC3_004849-T1 ID=KJC3_004849-T1|Name=KJC3_004849-T1|organism=Aspergillus niger KJC3|type=CDS|length=4770bp|location=Sequence derived from alignment at ch4:891544..893371- (Aspergillus niger KJC3)
GTGTCGGCTTGAAGCCTACATATGGGCTGGTGCCTTTCAGCGGTATTGCT
AGCGGAGATGCTATTGATGACCACACGGGCCCGCTTGCTCGTAATGTTAT
CGACGTTGCCTCTTGCTTAGACGCTATCGCCGGCTATGATGGCATAGACG
ATCGATGCCTGGGGAGTCCTAAACACGGCTCTACCTCGTTCGCCAAGTCG
CTTCAAGCGGACGCTACGAGGCTCGACGGCTTCAAAATAGGAGTCTTGAA
GGAAGGATTTGAGCACACTGCTGTGGACCCCGCAGTCAAAGAGTCGGTCA
TGGCGGCCACCCAGAAATTTGCGGAGCTTGGCGCAACAGTCGAGGAGGTA
TCTCTTCCAGACCACTACCATGGGCCTGCTATATGGACCATTCAGCAGCG
TGTATCAGGCTCCTTGACGCTGCTTGGACAGGCACATGGCAGAAGGGGGC
TCTACATGACGGAGATGGAGCGTGAGAGACTGCCGTGGACGAAGGAAGGC
TTTCAAAGAGCCTTCCCAGCCACGAAGAACGTTATAATCAATGGCCTCTA
TCTTACCTCGCGCTTTCCTGACTTGTACGGGAAATCAGTGAATATCGGCC
GAAGGCTTCGGGACCTCTACGAGGATCTGCTCCAGGAGTACGATGTGGTT
GTAATGCCAACCACTCCTGTTGTTGCACCAAGACATGGTGCACGAGGCCT
ACCGGTCGAGTCTCTGAAGCCTAGCATGGGCTTGACAATCAACACAGCAA
TTTTTGATGTTACGGGACACCCAGCGATGAGCATACCAGTGGGGTACGCT
CCGGCCAAGGATGATCCCCAAGTCAAGCTCCCGGTCGGTATGCAGATTGT
CGGAGGGTTGTGGCAGGAGTTTAAGGTACTCAAAGCGGGATATGCATGGG
AGAAAAACTACGATTGGAAAGAGGTGGCGAGTCATTGAGGACAACCCGGT
CAAGAGGGAAGATGCGGCCTCCCTTCTGCGCAATTTGGATCTCCATATTG
ACCAAGAAGATGAGGAAGATTTTCATACCCTCCTGGCAGCCGTCCATGAC
TGCGCCGAAACCGTGGCGAACCTGCCAGACTATCAGCCAGTCCCCGATCT
AGATCGATACCCTCGACATAATGTTCACCGTCCATCCTCAGAGGAACAAG
TATTTGGGCAGGCCTGGGCTCACAAGTTTCTGATCAAGGGCAATCCGGAG
GGAGGGCTATTGACGGGGAAGACGATCAGCGTGAAGGATTGCATTGCCGT
TGCAGGTGTACCACAGTTGCTTGGAAGTGATATCATTCCCTCTTGGACAC
CAATTACAGATGCGACGGTTGTGACCCGAGTTCTCGATGCTGGTGCTGAT
ATTCATGGTACTTCGACTTGTGAAAACTACTGCCATTCCACGGCGTCTTT
CACGAGTGCTCAAGGAACCGTGGAGAACCCTTTCGCGACCGGATACTCAG
CTGGCGGAAGCACCTCAGGAGGGGCAGCCTTGGTTGCAGCTGGTTTGGTT
GACATTACGCTCGGTGGAGACCAGGGTGGAAGCATTCGGGTTCCCTCCGC
GTTTTGCGGTTATGTCGGTATTGTTCACTTCTATTTCGCCGTGTCGGCTT
GAAGCCTACATATGGGCTGGTGCCTTTCAGCGGTATTGCTAGCGGAGATG
CTATTGATGACCACACGGGCCCGCTTGCTCGTAATGTTATCGACGTTGCC
TCTTGCTTAGACGCTATCGCCGGCTATGATGGCATAGACGATCGATGCCT
GGGGAGTCCTAAACACGGCTCTACCTCGTTCGCCAAGTCGCTTCAAGCGG
ACGCTACGAGGCTCGACGGCTTCAAAATAGGAGTCTTGAAGGAAGGATTT
GAGCACACTGCTGTGGACCCCGCAGTCAAAGAGTCGGTCATGGCGGCCAC
CCAGAAATTTGCGGAGCTTGGCGCAACAGTCGAGGAGGTATCTCTTCCAG
ACCACTACCATGGGCCTGCTATATGGACCATTCAGCAGCGTGTATCAGGC
TCCTTGACGCTGCTTGGACAGGCACATGGCAGAAGGGGGCTCTACATGAC
GGAGATGGAGCGTGAGAGACTGCCGTGGACGAAGGAAGGCTTTCAAAGAG
CCTTCCCAGCCACGAAGAACGTTATAATCAATGGCCTCTATCTTACCTCG
CGCTTTCCTGACTTGTACGGGAAATCAGTGAATATCGGCCGAAGGCTTCG
GGACCTCTACGAGGATCTGCTCCAGGAGTACGATGTGGTTGTAATGCCAA
CCACTCCTGTTGTTGCACCAAGACATGGTGCACGAGGCCTACCGGTCGAG
TCTCTGAAGCCTAGCATGGGCTTGACAATCAACACAGCAATTTTTGATGT
TACGGGACACCCAGCGATGAGCATACCAGTGGGGTACGCTCCGGCCAAGG
ATGATCCCCAAGTCAAGCTCCCGGTCGGTATGCAGATTGTCGGAGGGTTG
TGGCAGGAGTTTAAGGTACTCAAAGCGGGATATGCATGGGAGAAAAACTA
CGATTGGAAAGAGGTGGCGAGTCATTGAGGACAACCCGGTCAAGAGGGAA
GATGCGGCCTCCCTTCTGCGCAATTTGGATCTCCATATTGACCAAGAAGA
TGAGGAAGATTTTCATACCCTCCTGGCAGCCGTCCATGACTGCGCCGAAA
CCGTGGCGAACCTGCCAGACTATCAGCCAGTCCCCGATCTAGATCGATAC
CCTCGACATAATGTTCACCGTCCATCCTCAGAGGAACAAGTATTTGGGCA
GGCCTGGGCTCACAAGTTTCTGATCAAGGGCAATCCGGAGGGAGGGCTAT
TGACGGGGAAGACGATCAGCGTGAAGGATTGCATTGCCGTTGCAGGTGTA
CCACAGTTGCTTGGAAGTGATATCATTCCCTCTTGGACACCAATTACAGA
TGCGACGGTTGTGACCCGAGTTCTCGATGCTGGTGCTGATATTCATGGTA
CTTCGACTTGTGAAAACTACTGCCATTCCACGGCGTCTTTCACGAGTGCT
CAAGGAACCGTGGAGAACCCTTTCGCGACCGGATACTCAGCTGGCGGAAG
CACCTCAGGAGGGGCAGCCTTGGTTGCAGCTGGTTTGGTTGACATTACGC
TCGGTGGAGACCAGGGTGGAAGCATTCGGGTTCCCTCCGCGTTTTGCGGT
TATGTCGGTATTGTTCACTTCTATTTCGCCGTGTCGGCTTGAAGCCTACA
TATGGGCTGGTGCCTTTCAGCGGTATTGCTAGCGGAGATGCTATTGATGA
CCACACGGGCCCGCTTGCTCGTAATGTTATCGACGTTGCCTCTTGCTTAG
ACGCTATCGCCGGCTATGATGGCATAGACGATCGATGCCTGGGGAGTCCT
AAACACGGCTCTACCTCGTTCGCCAAGTCGCTTCAAGCGGACGCTACGAG
GCTCGACGGCTTCAAAATAGGAGTCTTGAAGGAAGGATTTGAGCACACTG
CTGTGGACCCCGCAGTCAAAGAGTCGGTCATGGCGGCCACCCAGAAATTT
GCGGAGCTTGGCGCAACAGTCGAGGAGGTATCTCTTCCAGACCACTACCA
TGGGCCTGCTATATGGACCATTCAGCAGCGTGTATCAGGCTCCTTGACGC
TGCTTGGACAGGCACATGGCAGAAGGGGGCTCTACATGACGGAGATGGAG
CGTGAGAGACTGCCGTGGACGAAGGAAGGCTTTCAAAGAGCCTTCCCAGC
CACGAAGAACGTTATAATCAATGGCCTCTATCTTACCTCGCGCTTTCCTG
ACTTGTACGGGAAATCAGTGAATATCGGCCGAAGGCTTCGGGACCTCTAC
GAGGATCTGCTCCAGGAGTACGATGTGGTTGTAATGCCAACCACTCCTGT
TGTTGCACCAAGACATGGTGCACGAGGCCTACCGGTCGAGTCTCTGAAGC
CTAGCATGGGCTTGACAATCAACACAGCAATTTTTGATGTTACGGGACAC
CCAGCGATGAGCATACCAGTGGGGTACGCTCCGGCCAAGGATGATCCCCA
AGTCAAGCTCCCGGTCGGTATGCAGATTGTCGGAGGGTTGTGGCAGGAGT
TTAAGGTACTCAAAGCGGGATATGCATGGGAGAAAAACTACGATTGGAAA
GAGGTGGCGAGTCATTGAGGACAACCCGGTCAAGAGGGAAGATGCGGCCT
CCCTTCTGCGCAATTTGGATCTCCATATTGACCAAGAAGATGAGGAAGAT
TTTCATACCCTCCTGGCAGCCGTCCATGACTGCGCCGAAACCGTGGCGAA
CCTGCCAGACTATCAGCCAGTCCCCGATCTAGATCGATACCCTCGACATA
ATGTTCACCGTCCATCCTCAGAGGAACAAGTATTTGGGCAGGCCTGGGCT
CACAAGTTTCTGATCAAGGGCAATCCGGAGGGAGGGCTATTGACGGGGAA
GACGATCAGCGTGAAGGATTGCATTGCCGTTGCAGGTGTACCACAGTTGC
TTGGAAGTGATATCATTCCCTCTTGGACACCAATTACAGATGCGACGGTT
GTGACCCGAGTTCTCGATGCTGGTGCTGATATTCATGGTACTTCGACTTG
TGAAAACTACTGCCATTCCACGGCGTCTTTCACGAGTGCTCAAGGAACCG
TGGAGAACCCTTTCGCGACCGGATACTCAGCTGGCGGAAGCACCTCAGGA
GGGGCAGCCTTGGTTGCAGCTGGTTTGGTTGACATTACGCTCGGTGGAGA
CCAGGGTGGAAGCATTCGGGTTCCCTCCGCGTTTTGCGGTTATGTCGGTA
TTGTTCACTTCTATTTCGCC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004849-T1.utr3p1 | KJC3_004849-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004849-T1.utr5p1 | KJC3_004849-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023631 |
| DBxref | InterPro:IPR036928 |
| DBxref | PFAM:PF01425 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:891544..893371 - |
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