You are here

Home

KJC3_004860-T1, KJC3_004860-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004860-T1
Unique NameKJC3_004860-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:926948..929173-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004860-T1 ID=KJC3_004860-T1|Name=KJC3_004860-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2226bp|location=Sequence derived from alignment at ch4:926948..929173- (Aspergillus niger KJC3)
ATGCAGCCGTTCGACAAATCTAAGCTAATCCCTTTCGGGAAGTGGTCTTG
CCGAGTCAACGGGTGCAACTTCAGATCATGGCTTCCAACGCGAAGTGCAG
CCCGACTTCTACACAGACGAAGGTGTCACATCCAAGATACAGCAATACGA
TCTCATTTGGTTTGAAGCAACTACTCTACGTTCCGCAATGACTATAGCAC
TACCCTTTTCAATATGTCACGCTCTTCCCCGGAACCCGTCCCGTCGACTT
TTACGTCCGGCGATTCCTTGAAGACCGAATCACGCTACACCTACCGTCAC
CTACAGCTTCTCCGTCAAAGTTCAACAGCAACCCCTCTGCGAGTGATCGC
TCATATTGATCTCGATGCCTTCTACGCACAATGTGAAATGGTACGCCTTA
GGACACCCCGCACGGTGCCCTTAGCTGTACGACAATGGGACTCGCTCATT
GCGATCAACTATCCGGCACGATCCTTCGGAATAACGAGGATGATATCAGC
ATCAGAGGCTAAGAAGCTGTGTCCGGAGATTGTCCTACAACATGTGGCCA
CATTTCGGGAAGGAGAAGGTGGGAAATGGGCATACAGAAACGATGCGTTC
AAGCGGATGAATACCGACAAGGTGTGTCTCGATCCATACCGGGCGGAGTC
GCGCAAGATCTTGAAGGTGATGAAGGAGGAACTGTCAAGATGGCAAAGAG
AGCTAGTTGGTGGTGAACACGGAGCTGGTGCGCAATCTCCCATACAGCAC
GCTGGTCTTGAGAAAGCTAGCGTTGACGAAGTCTTCATTGACCTGTCATC
TCTCGTGCACGGTGTCCTTCTTCAGCGGTATCCCGAGCTACGAGCTGAGC
TGCAAGGTGATGATCGAGTCACTCCGCTTCCTGTCCCACCTACGACTGCG
TTGGAGTGGAACTCGGAGGATTGCTTGGTCGATCTGGATGAGAATGAGAC
AGAAGTCGATGATCCTGACTGGGATGACATTGCTATGCTGATTGGGTCTG
AAATTGTTCGGTCGGTCAGGGCAGCTGTTTGGGATCGGCTCCAATACACT
TGCTCTGCGGGTGTTGCGAAGAACAAAATGATGGCAAAACTAGGGAGTTC
GTGCAACAAGCCGAACAAGCAGACTATTGTGCGGAATCGTGCTGTACAAC
GATTCCTCGGTGGCTACAAATTTACAAAGATTAGGATGCTTGGGGGTAAA
CTTGGTGACCAGGTTACTGCAATGTTTGGAACAGAACAAGTGAGTGACCT
TATAAAGGTGTCGCTGGAGCAATTTCGCGCCAAATTAGATGACGATACTG
CTACTTGGCTTTATGGAATCATCCGGGGAGAAGACAAAAGTGAGGTCAAT
TCGCGGACCCAAATCAAATCGATGCTTTCAGCCAAGTCTTTCAGGCCGAG
CATAAATTCCGTTGATCAGGCAGACAAATGGCTTAGTATTTTCGCGGCCG
ATATCTTTGGCCGCCTTGTTGAGGATGGCGTTCTTGAGCACAAGCGCCGC
CCGAAAACAGTTGCCTTGCATCACCGTCAAGGAGCTCAGGTTCGCTCCCG
TCAAATCCCCATTCCCGGATCAGTACCAATCGATGAAGCATTACTCTTTG
AGCTTGGCAAAACACTCTTCCGACAGGTGATGACAGATGGACGCGCATGG
CCGTGTGCCAATCTTTCCCTCAGCGTTGGTGGGTTCGAAGACGGTGTCTC
GAAGAACCGGGCAATAGACTCTTTCCTCCTTCGGGGTGAACAGGCAAAAT
CTTCACAACCAAAAAGGGATCTGGTGGCTGAAGAGTCGTCGGATGCTCCG
CAACCTGATGAGAAACGCAGGAAACTGGAGAACAATGGCATTAAGCGCTT
TTTCCTCAAGCCGCCGGAGACTGACCTACAGCCTGACCAAAATGGTCCTG
AACCAGGAGATATGGAAACTGAAATTGATGAGCATGCAGGTTCTGTCATC
CAGGCCAAGGAGCTCTCTCCTGAGCCGGTAGAGACGTTGCCAGTGGGTTA
TACCTGCAGTCGCTGCGGGAGCGTTCTACCAGAGCATGAGAAGGGCGAGC
ATGATGATTGGCACTTTGCCAAAGACCTGGCAGATGAAGAACGACAGGCA
TCCAGCGGCCCTCAACAGGCTCCAGTGCCCGCAAACAGACCCGGAGCATC
TAATGCTCGTAATAAGGTCAATCGTAGCAATCGGGGTAAACCAGAAAAGG
GCCAGACTCGTCTTAGATTTGGATAA
back to top

Coding sequence (CDS) from alignment at ch4:926948..929173-

>KJC3_004860-T1 ID=KJC3_004860-T1|Name=KJC3_004860-T1|organism=Aspergillus niger KJC3|type=CDS|length=4302bp|location=Sequence derived from alignment at ch4:926948..929173- (Aspergillus niger KJC3)
CACTACCCTTTTCAATATGTCACGCTCTTCCCCGGAACCCGTCCCGTCGA
CTTTTACGTCCGGCGATTCCTTGAAGACCGAATCACGCTACACCTACCGT
CACCTACAGCTTCTCCGTCAAAGTTCAACAGCAACCCCTCTGCGAGTGAT
CGCTCATATTGATCTCGATGCCTTCTACGCACAATGTGAAATGGTACGCC
TTAGGACACCCCGCACGGTGCCCTTAGCTGTACGACAATGGGACTCGCTC
ATTGCGATCAACTATCCGGCACGATCCTTCGGAATAACGAGGATGATATC
AGCATCAGAGGCTAAGAAGCTGTGTCCGGAGATTGTCCTACAACATGTGG
CCACATTTCGGGAAGGAGAAGGTGGGAAATGGGCATACAGAAACGATGCG
TTCAAGCGGATGAATACCGACAAGGTGTGTCTCGATCCATACCGGGCGGA
GTCGCGCAAGATCTTGAAGGTGATGAAGGAGGAACTGTCAAGATGGCAAA
GAGAGCTAGTTGGTGGTGAACACGGAGCTGGTGCGCAATCTCCCATACAG
CACGCTGGTCTTGAGAAAGCTAGCGTTGACGAAGTCTTCATTGACCTGTC
ATCTCTCGTGCACGGTGTCCTTCTTCAGCGGTATCCCGAGCTACGAGCTG
AGCTGCAAGGTGATGATCGAGTCACTCCGCTTCCTGTCCCACCTACGACT
GCGTTGGAGTGGAACTCGGAGGATTGCTTGGTCGATCTGGATGAGAATGA
GACAGAAGTCGATGATCCTGACTGGGATGACATTGCTATGCTGATTGGGT
CTGAAATTGTTCGGTCGGTCAGGGCAGCTGTTTGGGATCGGCTCCAATAC
ACTTGCTCTGCGGGTGTTGCGAAGAACAAAATGATGGCAAAACTAGGGAG
TTCGTGCAACAAGCCGAACAAGCAGACTATTGTGCGGAATCGTGCTGTAC
AACGATTCCTCGGTGGCTACAAATTTACAAAGATTAGGATGCTTGGGGGT
AAACTTGGTGACCAGGTTACTGCAATGTTTGGAACAGAACAAGTGAGTGA
CCTTATAAAGGTGTCGCTGGAGCAATTTCGCGCCAAATTAGATGACGATA
CTGCTACTTGGCTTTATGGAATCATCCGGGGAGAAGACAAAAGTGAGGTC
AATTCGCGGACCCAAATCAAATCGATGCTTTCAGCCAAGTCTTTCAGGCC
GAGCATAAATTCCGTTGATCAGGCAGACAAATGGCTTAGTATTTTCGCGG
CCGATATCTTTGGCCGCCTTGTTGAGGATGGCGTTCTTGAGCACAAGCGC
CGCCCGAAAACAGTTGCCTTGCATCACCGTCAAGGAGCTCAGGTTCGCTC
CCGTCAAATCCCCATTCCCGGATCAGTACCAATCGATGAAGCATTACTCT
TTGAGCTTGGCAAAACACTCTTCCGACAGGTGATGACAGATGGACGCGCA
TGGCCGTGTGCCAATCTTTCCCTCAGCGTTGGTGGGTTCGAAGACGGTGT
CTCGAAGAACCGGGCAATAGACTCTTTCCTCCTTCGGGGTGAACAGGCAA
AATCTTCACAACCAAAAAGGGATCTGGTGGCTGAAGAGTCGTCGGATGCT
CCGCAACCTGATGAGAAACGCAGGAAACTGGAGAACAATGGCATTAAGCG
CTTTTTCCTCAAGCCGCCGGAGACTGACCTACAGCCTGACCAAAATGGTC
CTGAACCAGGAGATATGGAAACTGAAATTGATGAGCATGCAGGTTCTGTC
ATCCAGGCCAAGGAGCTCTCTCCTGAGCCGGTAGAGACGTTGCCAGTGGG
TTATACCTGCAGTCGCTGCGGGAGCGTTCTACCAGAGCATGAGAAGGGCG
AGCATGATGATTGGCACTTTGCCAAAGACCTGGCAGATGAAGAACGACAG
GCATCCAGCGGCCCTCAACAGGCTCCAGTGCCCGCAAACAGACCCGGAGC
ATCTAATGCTCGTAATAAGGTCAATCGTAGCAATCGGGGTAAACCAGAAA
AGGGCCAGACTCGTCTTAGATTTGGATAAATGCAGCCGTTCGACAAATCT
AAGCTAATCCCTTTCGGGAAGTGGTCTTGCCGAGTCAACGGGTGCAACTT
CAGATCATGGCTTCCAACGCGAAGTGCAGCCCGACTTCTACACAGACGAA
GCACTACCCTTTTCAATATGTCACGCTCTTCCCCGGAACCCGTCCCGTCG
ACTTTTACGTCCGGCGATTCCTTGAAGACCGAATCACGCTACACCTACCG
TCACCTACAGCTTCTCCGTCAAAGTTCAACAGCAACCCCTCTGCGAGTGA
TCGCTCATATTGATCTCGATGCCTTCTACGCACAATGTGAAATGGTACGC
CTTAGGACACCCCGCACGGTGCCCTTAGCTGTACGACAATGGGACTCGCT
CATTGCGATCAACTATCCGGCACGATCCTTCGGAATAACGAGGATGATAT
CAGCATCAGAGGCTAAGAAGCTGTGTCCGGAGATTGTCCTACAACATGTG
GCCACATTTCGGGAAGGAGAAGGTGGGAAATGGGCATACAGAAACGATGC
GTTCAAGCGGATGAATACCGACAAGGTGTGTCTCGATCCATACCGGGCGG
AGTCGCGCAAGATCTTGAAGGTGATGAAGGAGGAACTGTCAAGATGGCAA
AGAGAGCTAGTTGGTGGTGAACACGGAGCTGGTGCGCAATCTCCCATACA
GCACGCTGGTCTTGAGAAAGCTAGCGTTGACGAAGTCTTCATTGACCTGT
CATCTCTCGTGCACGGTGTCCTTCTTCAGCGGTATCCCGAGCTACGAGCT
GAGCTGCAAGGTGATGATCGAGTCACTCCGCTTCCTGTCCCACCTACGAC
TGCGTTGGAGTGGAACTCGGAGGATTGCTTGGTCGATCTGGATGAGAATG
AGACAGAAGTCGATGATCCTGACTGGGATGACATTGCTATGCTGATTGGG
TCTGAAATTGTTCGGTCGGTCAGGGCAGCTGTTTGGGATCGGCTCCAATA
CACTTGCTCTGCGGGTGTTGCGAAGAACAAAATGATGGCAAAACTAGGGA
GTTCGTGCAACAAGCCGAACAAGCAGACTATTGTGCGGAATCGTGCTGTA
CAACGATTCCTCGGTGGCTACAAATTTACAAAGATTAGGATGCTTGGGGG
TAAACTTGGTGACCAGGTTACTGCAATGTTTGGAACAGAACAAGTGAGTG
ACCTTATAAAGGTGTCGCTGGAGCAATTTCGCGCCAAATTAGATGACGAT
ACTGCTACTTGGCTTTATGGAATCATCCGGGGAGAAGACAAAAGTGAGGT
CAATTCGCGGACCCAAATCAAATCGATGCTTTCAGCCAAGTCTTTCAGGC
CGAGCATAAATTCCGTTGATCAGGCAGACAAATGGCTTAGTATTTTCGCG
GCCGATATCTTTGGCCGCCTTGTTGAGGATGGCGTTCTTGAGCACAAGCG
CCGCCCGAAAACAGTTGCCTTGCATCACCGTCAAGGAGCTCAGGTTCGCT
CCCGTCAAATCCCCATTCCCGGATCAGTACCAATCGATGAAGCATTACTC
TTTGAGCTTGGCAAAACACTCTTCCGACAGGTGATGACAGATGGACGCGC
ATGGCCGTGTGCCAATCTTTCCCTCAGCGTTGGTGGGTTCGAAGACGGTG
TCTCGAAGAACCGGGCAATAGACTCTTTCCTCCTTCGGGGTGAACAGGCA
AAATCTTCACAACCAAAAAGGGATCTGGTGGCTGAAGAGTCGTCGGATGC
TCCGCAACCTGATGAGAAACGCAGGAAACTGGAGAACAATGGCATTAAGC
GCTTTTTCCTCAAGCCGCCGGAGACTGACCTACAGCCTGACCAAAATGGT
CCTGAACCAGGAGATATGGAAACTGAAATTGATGAGCATGCAGGTTCTGT
CATCCAGGCCAAGGAGCTCTCTCCTGAGCCGGTAGAGACGTTGCCAGTGG
GTTATACCTGCAGTCGCTGCGGGAGCGTTCTACCAGAGCATGAGAAGGGC
GAGCATGATGATTGGCACTTTGCCAAAGACCTGGCAGATGAAGAACGACA
GGCATCCAGCGGCCCTCAACAGGCTCCAGTGCCCGCAAACAGACCCGGAG
CATCTAATGCTCGTAATAAGGTCAATCGTAGCAATCGGGGTAAACCAGAA
AAGGGCCAGACTCGTCTTAGATTTGGATAAATGCAGCCGTTCGACAAATC
TAAGCTAATCCCTTTCGGGAAGTGGTCTTGCCGAGTCAACGGGTGCAACT
TCAGATCATGGCTTCCAACGCGAAGTGCAGCCCGACTTCTACACAGACGA
AG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004860KJC3_004860Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004860-T1KJC3_004860-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004860-T1.cdsKJC3_004860-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004860-T1.exon2KJC3_004860-T1.exon2Aspergillus niger KJC3exon
KJC3_004860-T1.exon1KJC3_004860-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG09261801
DBxrefInterPro:IPR043502
DBxrefInterPro:IPR036775
DBxrefInterPro:IPR043128
DBxrefInterPro:IPR017961
DBxrefInterPro:IPR001126
DBxrefInterPro:IPR041298
DBxrefPFAM:PF18439
DBxrefPFAM:PF11799
DBxrefPFAM:PF00817
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:926948..929173 -
Powered by Drupal