You are here

Home

KJC3_004880-T1, KJC3_004880-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004880-T1
Unique NameKJC3_004880-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:981366..984272-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004880-T1 ID=KJC3_004880-T1|Name=KJC3_004880-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2907bp|location=Sequence derived from alignment at ch4:981366..984272- (Aspergillus niger KJC3)
GTTGCGCGGCTTGGCTGGTAGTAAGCCTTCCCACAATGGTGGGGAAAGTC
CCGTGGAGTCACGCGGCCCCCCCAAATTCCAACATCAGCGCGCCATGACA
TCTTCCCTCCCATGGCCTGACCGCTCAGATGCATTCCCAGCTCACCTCAC
TCTGCTTTTTCTTTCAAGTTATCTTCTCTCTCTCACTAGGGCCCCTCGGA
TGCATCATGGGCCACTTTTGACTGGGTAAGTCCTCTGCCAGACTCTACTA
GTTTATGATTTCATCCCGCGTCTGGTTTAATAACCTTAGTATAGCCGCTT
CCCAATCAGTCGCCCAAGTTGAGATTTCTTTTAGACCGGGGTGGTGGGCC
TGGGGCTCGGACAACATCCGTTCCTCGCACCCCTCGGTTAAAGGATTCCA
GTTTCTAAGACATAATACAGTCAGTAACGTGGGCCTGGCCTGTATCGAAG
TGCCTGGACGCGGGGCTAAAGCCTGGGGTGCTTATTGCGGAGATAATAGG
AACCACGGTTGGCGTGCCCCAGAACAACCTCGAGCTCCAATTGGTGGCCG
GGCAACGACTGGAGCAAGGCTAACAACCACCCCGGCTGTCGGAGAGTCGC
CGCGCTAGCTCTAAGACCAATCAGCGAGTGCTTTGCATAAGATCCAGCCA
TGTGGGCGACTGGTGGGATATCACACACATTACAAAGCCCGTACACCGTA
CGGCCCAAGTCAGCCCGAGAATACCACTACCCCGGTGAGAAGCTGAGGCA
TCTTTCTCTCTCGGCCCTGGTTCCCCGTGCGGAGAAATTCGTACTAACCA
GGGAGTCCGCTATGTGACTCGCACATCGGCATCCGTCTTTCACTTGCATG
CGGGTCCACGGCAGGCCTCTGGACGTCATCTCGACAAGCTCGGTCGGCAG
CAGTCCGGTGTCCATTGACCATAGAAGCGGATTGATCATCAGCCCATGTA
CAGCTTACAGAAACCCCGCGACTGATTGTTTTTTTCGGGCTAGTCGTCGG
CCTATTTCTTTTTCTATGAGCCTGCCCCCGGACGTGAGAATGGCTGTTTC
TCTTTCCCTCCATTCTCCTTTGCCCTATCTTACTTCCCGGTGCCTTTCCT
GCAAAGCCAAACTTCTTGTGGTACAGGCAATTCGGCACAATGCAGGGCCA
AGCACTTCGTTATGCCCAGATCTTCTTAGTCGCTTGCCCCTCCTTTATCC
TTTTCGGTTACAATCAGTCCGGTGTCGGAGGACTCGATGACTTTCCCTCC
TGGGTGAGAGTATTTCCAGAAATTGACACAGTCAACACTACTGGAGCTCA
GGAGTCTCACAATGCCACCGTTCAAGGAGCTGTGGTTGCGTCATACACTA
TCGGAGCCCTCTTCGGGTCTCTGATTTGTACAATGATCGGTGACATGCTT
GGACGTCGCCGATCGATCTTTTCTGGAGCACTCATTGCATTGATTGGCCA
AATCCTGGAATGCACCGCCTACTCTCTAGCTCAATTCGTTGTTGGGAGAG
TGATTCTGGGTTTCGGTGTTGGCATGCTCAGTGCGACTGTACCTGTCTGG
CAATCCGAGTGCGCGCCTGCTGCTCAGCGAGGACGGAACGTGGTGTTGAC
AGGCATGTTCATCGCCTTTGGTTTCGCTTTGACACAATGGGTGAACTTCG
GTTTCTACCACATGGAGAACTCGCCTGCCTCGTGGAGGGCATCACTTGCC
ATCCCGGCCTTGTTTTCATTCATAATCATGGGCAGCATTTTCTTCCTCCC
AGAGTCGCCGCGTTGGCTCGTCATGAAGAACAAATCAGACGTGGCACAAT
TTACTTTGGCATCTCTGAGGGGCAAAGAGGTAGACTCGCTGGAGGTTGTG
GCGGAGCTAAGAGCCTACGAGCTTTCTCTGGAGGAATCCTCGAACAACTC
ACTTAGGCTCCGAGACATCTTCAGTATGGGAGAGGAGAAGCTCCTATACA
GGTTCATCCTATGTGTCACCCTCCAATTCTTCCAGCAGATGACTGGTGGA
ACTCTGATCTCGGTCTACATTCCTCTTATCTTTCAAACAGATCTTGGACT
CGGTGCCAGTCTGTCGAAAATCTTGGCAGCATGCGCATTGACTTGGAAGT
TCCTGTGCTGCTTTGTGGGATTTGCCATCATTGACCGCATGGGACGACGC
ACAGCATTTATGGTCAGTGGCGGTGGTATGGGCATGTGCATGTTGGCATT
GGCGGTCTCCAATTCCTTCTCCAATAACCATACCGCATCTATTATTTCCG
CCCTTTTCATTTTCATTTACAACTTCTTCCTTCCGATCGGCTTCTTGGGA
GCCAACTTCCTTTACCCAGCCGAGGTGGCGCCTGCCCGTCTTCGTGTCGC
TATGCAAGCGATCTCGATTGCCAACCAATGGCTATGGTACGACAGCCTCT
ATGATTTCCTCTTAGCTGACTTACGCTAATTACTTTCTCTTTTAGGATGT
TTGTCGTCGCTATGATCACTCCCGTCGCTATCGACAACATCGGCTATCGC
TACTACATTGTTTACGCCATCATCGGTGGCATCATCCCTCCCGTCATCTA
TCTATTCTACCCAGAAACAAAGGGCCGGTCCCTAGAAGAAGTTGACGAGA
TCTTCCGTGACGCTCCCACCATCTTCGCTGCGGTGTCGATGTCGAAGCAC
AAGCCCATGGGAGATAGGGCCATGGAGCGTGTCATGGAAGAGAAGGCAAC
TGTGGAGGAAATAGAGTAAAGACATAGAAGGATAAACTTGGATGAACTTG
TCAGCGTTATGTGTCTTAGATGGACATAGATCTACTCTTGTAATGCCACA
CGTCTGTGATGATCTGTACATGATTCAGTGCCTACCTAACTACTTGCCCT
TACCATATACATGACAGCTAAGAGCTCTTCAGACCTCTGAAGAATACAAA
TCGACGG
back to top

Coding sequence (CDS) from alignment at ch4:981366..984272-

>KJC3_004880-T1 ID=KJC3_004880-T1|Name=KJC3_004880-T1|organism=Aspergillus niger KJC3|type=CDS|length=3042bp|location=Sequence derived from alignment at ch4:981366..984272- (Aspergillus niger KJC3)
GATGTTTGTCGTCGCTATGATCACTCCCGTCGCTATCGACAACATCGGCT
ATCGCTACTACATTGTTTACGCCATCATCGGTGGCATCATCCCTCCCGTC
ATCTATCTATTCTACCCAGAAACAAAGGGCCGGTCCCTAGAAGAAGTTGA
CGAGATCTTCCGTGACGCTCCCACCATCTTCGCTGCGGTGTCGATGTCGA
AGCACAAGCCCATGGGAGATAGGGCCATGGAGCGTGTCATGGAAGAGAAG
GCAACTGTGGAGGAAATAGAGTAAATGCAGGGCCAAGCACTTCGTTATGC
CCAGATCTTCTTAGTCGCTTGCCCCTCCTTTATCCTTTTCGGTTACAATC
AGTCCGGTGTCGGAGGACTCGATGACTTTCCCTCCTGGGTGAGAGTATTT
CCAGAAATTGACACAGTCAACACTACTGGAGCTCAGGAGTCTCACAATGC
CACCGTTCAAGGAGCTGTGGTTGCGTCATACACTATCGGAGCCCTCTTCG
GGTCTCTGATTTGTACAATGATCGGTGACATGCTTGGACGTCGCCGATCG
ATCTTTTCTGGAGCACTCATTGCATTGATTGGCCAAATCCTGGAATGCAC
CGCCTACTCTCTAGCTCAATTCGTTGTTGGGAGAGTGATTCTGGGTTTCG
GTGTTGGCATGCTCAGTGCGACTGTACCTGTCTGGCAATCCGAGTGCGCG
CCTGCTGCTCAGCGAGGACGGAACGTGGTGTTGACAGGCATGTTCATCGC
CTTTGGTTTCGCTTTGACACAATGGGTGAACTTCGGTTTCTACCACATGG
AGAACTCGCCTGCCTCGTGGAGGGCATCACTTGCCATCCCGGCCTTGTTT
TCATTCATAATCATGGGCAGCATTTTCTTCCTCCCAGAGTCGCCGCGTTG
GCTCGTCATGAAGAACAAATCAGACGTGGCACAATTTACTTTGGCATCTC
TGAGGGGCAAAGAGGTAGACTCGCTGGAGGTTGTGGCGGAGCTAAGAGCC
TACGAGCTTTCTCTGGAGGAATCCTCGAACAACTCACTTAGGCTCCGAGA
CATCTTCAGTATGGGAGAGGAGAAGCTCCTATACAGGTTCATCCTATGTG
TCACCCTCCAATTCTTCCAGCAGATGACTGGTGGAACTCTGATCTCGGTC
TACATTCCTCTTATCTTTCAAACAGATCTTGGACTCGGTGCCAGTCTGTC
GAAAATCTTGGCAGCATGCGCATTGACTTGGAAGTTCCTGTGCTGCTTTG
TGGGATTTGCCATCATTGACCGCATGGGACGACGCACAGCATTTATGGTC
AGTGGCGGTGGTATGGGCATGTGCATGTTGGCATTGGCGGTCTCCAATTC
CTTCTCCAATAACCATACCGCATCTATTATTTCCGCCCTTTTCATTTTCA
TTTACAACTTCTTCCTTCCGATCGGCTTCTTGGGAGCCAACTTCCTTTAC
CCAGCCGAGGTGGCGCCTGCCCGTCTTCGTGTCGCTATGCAAGCGATCTC
GATTGCCAACCAATGGCTATGGATGTTTGTCGTCGCTATGATCACTCCCG
TCGCTATCGACAACATCGGCTATCGCTACTACATTGTTTACGCCATCATC
GGTGGCATCATCCCTCCCGTCATCTATCTATTCTACCCAGAAACAAAGGG
CCGGTCCCTAGAAGAAGTTGACGAGATCTTCCGTGACGCTCCCACCATCT
TCGCTGCGGTGTCGATGTCGAAGCACAAGCCCATGGGAGATAGGGCCATG
GAGCGTGTCATGGAAGAGAAGGCAACTGTGGAGGAAATAGAGTAAATGCA
GGGCCAAGCACTTCGTTATGCCCAGATCTTCTTAGTCGCTTGCCCCTCCT
TTATCCTTTTCGGTTACAATCAGTCCGGTGTCGGAGGACTCGATGACTTT
CCCTCCTGGGTGAGAGTATTTCCAGAAATTGACACAGTCAACACTACTGG
AGCTCAGGAGTCTCACAATGCCACCGTTCAAGGAGCTGTGGTTGCGTCAT
ACACTATCGGAGCCCTCTTCGGGTCTCTGATTTGTACAATGATCGGTGAC
ATGCTTGGACGTCGCCGATCGATCTTTTCTGGAGCACTCATTGCATTGAT
TGGCCAAATCCTGGAATGCACCGCCTACTCTCTAGCTCAATTCGTTGTTG
GGAGAGTGATTCTGGGTTTCGGTGTTGGCATGCTCAGTGCGACTGTACCT
GTCTGGCAATCCGAGTGCGCGCCTGCTGCTCAGCGAGGACGGAACGTGGT
GTTGACAGGCATGTTCATCGCCTTTGGTTTCGCTTTGACACAATGGGTGA
ACTTCGGTTTCTACCACATGGAGAACTCGCCTGCCTCGTGGAGGGCATCA
CTTGCCATCCCGGCCTTGTTTTCATTCATAATCATGGGCAGCATTTTCTT
CCTCCCAGAGTCGCCGCGTTGGCTCGTCATGAAGAACAAATCAGACGTGG
CACAATTTACTTTGGCATCTCTGAGGGGCAAAGAGGTAGACTCGCTGGAG
GTTGTGGCGGAGCTAAGAGCCTACGAGCTTTCTCTGGAGGAATCCTCGAA
CAACTCACTTAGGCTCCGAGACATCTTCAGTATGGGAGAGGAGAAGCTCC
TATACAGGTTCATCCTATGTGTCACCCTCCAATTCTTCCAGCAGATGACT
GGTGGAACTCTGATCTCGGTCTACATTCCTCTTATCTTTCAAACAGATCT
TGGACTCGGTGCCAGTCTGTCGAAAATCTTGGCAGCATGCGCATTGACTT
GGAAGTTCCTGTGCTGCTTTGTGGGATTTGCCATCATTGACCGCATGGGA
CGACGCACAGCATTTATGGTCAGTGGCGGTGGTATGGGCATGTGCATGTT
GGCATTGGCGGTCTCCAATTCCTTCTCCAATAACCATACCGCATCTATTA
TTTCCGCCCTTTTCATTTTCATTTACAACTTCTTCCTTCCGATCGGCTTC
TTGGGAGCCAACTTCCTTTACCCAGCCGAGGTGGCGCCTGCCCGTCTTCG
TGTCGCTATGCAAGCGATCTCGATTGCCAACCAATGGCTATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004880KJC3_004880Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004880-T1KJC3_004880-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004880-T1.cdsKJC3_004880-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004880-T1.utr3p1KJC3_004880-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004880-T1.exon4KJC3_004880-T1.exon4Aspergillus niger KJC3exon
KJC3_004880-T1.exon3KJC3_004880-T1.exon3Aspergillus niger KJC3exon
KJC3_004880-T1.exon2KJC3_004880-T1.exon2Aspergillus niger KJC3exon
KJC3_004880-T1.exon1KJC3_004880-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004880-T1.utr5p3KJC3_004880-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_004880-T1.utr5p2KJC3_004880-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_004880-T1.utr5p1KJC3_004880-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR005829
DBxrefInterPro:IPR005828
DBxrefInterPro:IPR003663
DBxrefPFAM:PF00083
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:981366..984272 -
Powered by Drupal