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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1140553..1142449- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004928-T1 ID=KJC3_004928-T1|Name=KJC3_004928-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1897bp|location=Sequence derived from alignment at ch4:1140553..1142449- (Aspergillus niger KJC3)
CACTCATACTTCTCTCCTGTCATCTCGCTAGCTGCACCCTGTCCTTGACT
AGCATTGTCTTCAATCAATCAGAATGAACGTCCGGAGTCGAACTGGCTGT
TTGGCTTGCAAGAGTAAGTCTATCCGCTCCATCAATGGGCCGCCTGCATG
GCCACGCTGCCCAATGTCCTCGTGCTGATAAGGTATCTCAGAGCGCAAGC
GTCGTTGCGGAGGTAAGATCTACAACTTGCTACATTTAGTACCTATTCTT
CTTAGTGCCACGGAGTATCTGAGCTGACCAATCGCCATTCCAGAGGAGAA
ACCGGCTTGCAAGAACTGTATCGTGCGCGGATTCGAGTGCCCGTACCTAT
CGGAGAACTCGCAACTGATCAACCTGCGGTTCAAGATCTCTCTTGGTAGG
TCGTCCTTGCATCTGACGCTTGGACTGTATCATAACCTGTTCTAGCGAAT
GGCTACCGGCTACCTGTAAAGAAGCAGAATCGGAGGCACTTCATCTCCGT
TTCGGCCGAGGATGTGGCCTTATTATCATCTGAGCACAACCAAGAAATTG
TACCCGCAGACAAAGATAATACACGCACCAAGAAAGTAAATGGCCACGCA
CTTAGCCCTGTCAGACTAGAGGGATCGGTCTTTGCATCTCCTTTAGTCGA
TTGCAGTGCCCTTGAGCAGCAGCTCTTCCAATATTGTGAGTGAATGAGTC
ATTGACACATCTGGTACTTCTCATATTAATCTATACACAGACCTGCAGGT
AATCAGCAGAGTGAGAGTCTTTCGTGATGATTCGAGGAACAAGTTTCGTT
CTCTGGTCGTCCCCTTTTGCTGCGGACGGAGACCGTTGCTGTACGCGGTT
CTGTCCGTCAGCGCCAATGACCGTCGCGCCGAGACAGTACCGACACACAT
AAACTACGAACAGCTAGCGCTTTCGTACAAATCCTTGGCCTTGCAGTCAC
TTAGAAAAGCTCTTTCGGATGTTAGTAACGCAAGCGAGGCCCTCATGACC
TGTCTCATTCTATGCACACTGGAAATTGCCTCAGGCTGCCAACCGGATTG
GGTGCGCCATGCTAAGGGCGCCTTTGCCATTATAAACAGCTGCTCTAGCT
TGATTGATCCCGAGGTTTTGTTTTTCGCTCGGAGCTACTTCCAGTCTCGT
ACTGTCTTCTTCCGCACTACGGGCTGCCATGATGATCTGCTTGACAAGGA
TGCCGAACGTCTGCTTGAGTCCCAGACTGGAATCGACCATGGCATGGACT
TTTTCTCGCAATGCACAACCCTAGGATTGAATTACACAGACGAGCGGACG
GAAATACAGCCCCATTTTGGTTGTTCCCTCAGCTTGCTCGACATCATCGC
ACGGGCAACCGACTTGGTCGGCCAGAAACAGAAGCTTCGTCGCAACGGCT
GCAACTCCTTCTTTTCCGAAGGGGAAATGATGCAGCGGGCCATGTCCCTA
CGAAGCGAGCTGGACCTGTTGCCTAAAGAACATTCCCCAGATAGCGACTA
TCTAACAACTTGCGGAGAGTGTTTTCGCATGGCTGCCGACCTATACTTGC
AGCTGGCGTGCGACATCCCCTTAACCCAGCCCGCCCTCCAGACACTGCTA
GCTAAACTCCTGGACCACATTGGCAAAGTCATCCGGGAGGATCAGGAGCG
GCAACTCTTCCCGATGTGGCCACTGTTCCTGGCAGGGTGTCTGTCTACCA
CCGACGAGGATCGGGTACGCGTTCTCAACTACTTCACTTACCTCGCCCAC
GCATGGCCAGTCAGCAACATCCCCATCGTGCGCGAAGCCACGGAGACAGT
TTGGAAGTTTCGAGACTTGAACCCTCATGAGTGTGGAAGTGGGTTCGATT
GGCAAATGATAATCAGCCGGATGAACTGGAAATTGGCATTGTCGTAG back to topCoding sequence (CDS) from alignment at ch4:1140553..1142449- >KJC3_004928-T1 ID=KJC3_004928-T1|Name=KJC3_004928-T1|organism=Aspergillus niger KJC3|type=CDS|length=7800bp|location=Sequence derived from alignment at ch4:1140553..1142449- (Aspergillus niger KJC3)
ACCTGCAGGTAATCAGCAGAGTGAGAGTCTTTCGTGATGATTCGAGGAAC
AAGTTTCGTTCTCTGGTCGTCCCCTTTTGCTGCGGACGGAGACCGTTGCT
GTACGCGGTTCTGTCCGTCAGCGCCAATGACCGTCGCGCCGAGACAGTAC
CGACACACATAAACTACGAACAGCTAGCGCTTTCGTACAAATCCTTGGCC
TTGCAGTCACTTAGAAAAGCTCTTTCGGATGTTAGTAACGCAAGCGAGGC
CCTCATGACCTGTCTCATTCTATGCACACTGGAAATTGCCTCAGGCTGCC
AACCGGATTGGGTGCGCCATGCTAAGGGCGCCTTTGCCATTATAAACAGC
TGCTCTAGCTTGATTGATCCCGAGGTTTTGTTTTTCGCTCGGAGCTACTT
CCAGTCTCGTACTGTCTTCTTCCGCACTACGGGCTGCCATGATGATCTGC
TTGACAAGGATGCCGAACGTCTGCTTGAGTCCCAGACTGGAATCGACCAT
GGCATGGACTTTTTCTCGCAATGCACAACCCTAGGATTGAATTACACAGA
CGAGCGGACGGAAATACAGCCCCATTTTGGTTGTTCCCTCAGCTTGCTCG
ACATCATCGCACGGGCAACCGACTTGGTCGGCCAGAAACAGAAGCTTCGT
CGCAACGGCTGCAACTCCTTCTTTTCCGAAGGGGAAATGATGCAGCGGGC
CATGTCCCTACGAAGCGAGCTGGACCTGTTGCCTAAAGAACATTCCCCAG
ATAGCGACTATCTAACAACTTGCGGAGAGTGTTTTCGCATGGCTGCCGAC
CTATACTTGCAGCTGGCGTGCGACATCCCCTTAACCCAGCCCGCCCTCCA
GACACTGCTAGCTAAACTCCTGGACCACATTGGCAAAGTCATCCGGGAGG
ATCAGGAGCGGCAACTCTTCCCGATGTGGCCACTGTTCCTGGCAGGGTGT
CTGTCTACCACCGACGAGGATCGGGTACGCGTTCTCAACTACTTCACTTA
CCTCGCCCACGCATGGCCAGTCAGCAACATCCCCATCGTGCGCGAAGCCA
CGGAGACAGTTTGGAAGTTTCGAGACTTGAACCCTCATGAGTGTGGAAGT
GGGTTCGATTGGCAAATGATAATCAGCCGGATGAACTGGAAATTGGCATT
GTCGTAGCGAATGGCTACCGGCTACCTGTAAAGAAGCAGAATCGGAGGCA
CTTCATCTCCGTTTCGGCCGAGGATGTGGCCTTATTATCATCTGAGCACA
ACCAAGAAATTGTACCCGCAGACAAAGATAATACACGCACCAAGAAAGTA
AATGGCCACGCACTTAGCCCTGTCAGACTAGAGGGATCGGTCTTTGCATC
TCCTTTAGTCGATTGCAGTGCCCTTGAGCAGCAGCTCTTCCAATATTAGG
AGAAACCGGCTTGCAAGAACTGTATCGTGCGCGGATTCGAGTGCCCGTAC
CTATCGGAGAACTCGCAACTGATCAACCTGCGGTTCAAGATCTCTCTTGA
GCGCAAGCGTCGTTGCGGAGATGAACGTCCGGAGTCGAACTGGCTGTTTG
GCTTGCAAGAACCTGCAGGTAATCAGCAGAGTGAGAGTCTTTCGTGATGA
TTCGAGGAACAAGTTTCGTTCTCTGGTCGTCCCCTTTTGCTGCGGACGGA
GACCGTTGCTGTACGCGGTTCTGTCCGTCAGCGCCAATGACCGTCGCGCC
GAGACAGTACCGACACACATAAACTACGAACAGCTAGCGCTTTCGTACAA
ATCCTTGGCCTTGCAGTCACTTAGAAAAGCTCTTTCGGATGTTAGTAACG
CAAGCGAGGCCCTCATGACCTGTCTCATTCTATGCACACTGGAAATTGCC
TCAGGCTGCCAACCGGATTGGGTGCGCCATGCTAAGGGCGCCTTTGCCAT
TATAAACAGCTGCTCTAGCTTGATTGATCCCGAGGTTTTGTTTTTCGCTC
GGAGCTACTTCCAGTCTCGTACTGTCTTCTTCCGCACTACGGGCTGCCAT
GATGATCTGCTTGACAAGGATGCCGAACGTCTGCTTGAGTCCCAGACTGG
AATCGACCATGGCATGGACTTTTTCTCGCAATGCACAACCCTAGGATTGA
ATTACACAGACGAGCGGACGGAAATACAGCCCCATTTTGGTTGTTCCCTC
AGCTTGCTCGACATCATCGCACGGGCAACCGACTTGGTCGGCCAGAAACA
GAAGCTTCGTCGCAACGGCTGCAACTCCTTCTTTTCCGAAGGGGAAATGA
TGCAGCGGGCCATGTCCCTACGAAGCGAGCTGGACCTGTTGCCTAAAGAA
CATTCCCCAGATAGCGACTATCTAACAACTTGCGGAGAGTGTTTTCGCAT
GGCTGCCGACCTATACTTGCAGCTGGCGTGCGACATCCCCTTAACCCAGC
CCGCCCTCCAGACACTGCTAGCTAAACTCCTGGACCACATTGGCAAAGTC
ATCCGGGAGGATCAGGAGCGGCAACTCTTCCCGATGTGGCCACTGTTCCT
GGCAGGGTGTCTGTCTACCACCGACGAGGATCGGGTACGCGTTCTCAACT
ACTTCACTTACCTCGCCCACGCATGGCCAGTCAGCAACATCCCCATCGTG
CGCGAAGCCACGGAGACAGTTTGGAAGTTTCGAGACTTGAACCCTCATGA
GTGTGGAAGTGGGTTCGATTGGCAAATGATAATCAGCCGGATGAACTGGA
AATTGGCATTGTCGTAGCGAATGGCTACCGGCTACCTGTAAAGAAGCAGA
ATCGGAGGCACTTCATCTCCGTTTCGGCCGAGGATGTGGCCTTATTATCA
TCTGAGCACAACCAAGAAATTGTACCCGCAGACAAAGATAATACACGCAC
CAAGAAAGTAAATGGCCACGCACTTAGCCCTGTCAGACTAGAGGGATCGG
TCTTTGCATCTCCTTTAGTCGATTGCAGTGCCCTTGAGCAGCAGCTCTTC
CAATATTAGGAGAAACCGGCTTGCAAGAACTGTATCGTGCGCGGATTCGA
GTGCCCGTACCTATCGGAGAACTCGCAACTGATCAACCTGCGGTTCAAGA
TCTCTCTTGAGCGCAAGCGTCGTTGCGGAGATGAACGTCCGGAGTCGAAC
TGGCTGTTTGGCTTGCAAGAACCTGCAGGTAATCAGCAGAGTGAGAGTCT
TTCGTGATGATTCGAGGAACAAGTTTCGTTCTCTGGTCGTCCCCTTTTGC
TGCGGACGGAGACCGTTGCTGTACGCGGTTCTGTCCGTCAGCGCCAATGA
CCGTCGCGCCGAGACAGTACCGACACACATAAACTACGAACAGCTAGCGC
TTTCGTACAAATCCTTGGCCTTGCAGTCACTTAGAAAAGCTCTTTCGGAT
GTTAGTAACGCAAGCGAGGCCCTCATGACCTGTCTCATTCTATGCACACT
GGAAATTGCCTCAGGCTGCCAACCGGATTGGGTGCGCCATGCTAAGGGCG
CCTTTGCCATTATAAACAGCTGCTCTAGCTTGATTGATCCCGAGGTTTTG
TTTTTCGCTCGGAGCTACTTCCAGTCTCGTACTGTCTTCTTCCGCACTAC
GGGCTGCCATGATGATCTGCTTGACAAGGATGCCGAACGTCTGCTTGAGT
CCCAGACTGGAATCGACCATGGCATGGACTTTTTCTCGCAATGCACAACC
CTAGGATTGAATTACACAGACGAGCGGACGGAAATACAGCCCCATTTTGG
TTGTTCCCTCAGCTTGCTCGACATCATCGCACGGGCAACCGACTTGGTCG
GCCAGAAACAGAAGCTTCGTCGCAACGGCTGCAACTCCTTCTTTTCCGAA
GGGGAAATGATGCAGCGGGCCATGTCCCTACGAAGCGAGCTGGACCTGTT
GCCTAAAGAACATTCCCCAGATAGCGACTATCTAACAACTTGCGGAGAGT
GTTTTCGCATGGCTGCCGACCTATACTTGCAGCTGGCGTGCGACATCCCC
TTAACCCAGCCCGCCCTCCAGACACTGCTAGCTAAACTCCTGGACCACAT
TGGCAAAGTCATCCGGGAGGATCAGGAGCGGCAACTCTTCCCGATGTGGC
CACTGTTCCTGGCAGGGTGTCTGTCTACCACCGACGAGGATCGGGTACGC
GTTCTCAACTACTTCACTTACCTCGCCCACGCATGGCCAGTCAGCAACAT
CCCCATCGTGCGCGAAGCCACGGAGACAGTTTGGAAGTTTCGAGACTTGA
ACCCTCATGAGTGTGGAAGTGGGTTCGATTGGCAAATGATAATCAGCCGG
ATGAACTGGAAATTGGCATTGTCGTAGCGAATGGCTACCGGCTACCTGTA
AAGAAGCAGAATCGGAGGCACTTCATCTCCGTTTCGGCCGAGGATGTGGC
CTTATTATCATCTGAGCACAACCAAGAAATTGTACCCGCAGACAAAGATA
ATACACGCACCAAGAAAGTAAATGGCCACGCACTTAGCCCTGTCAGACTA
GAGGGATCGGTCTTTGCATCTCCTTTAGTCGATTGCAGTGCCCTTGAGCA
GCAGCTCTTCCAATATTAGGAGAAACCGGCTTGCAAGAACTGTATCGTGC
GCGGATTCGAGTGCCCGTACCTATCGGAGAACTCGCAACTGATCAACCTG
CGGTTCAAGATCTCTCTTGAGCGCAAGCGTCGTTGCGGAGATGAACGTCC
GGAGTCGAACTGGCTGTTTGGCTTGCAAGAACCTGCAGGTAATCAGCAGA
GTGAGAGTCTTTCGTGATGATTCGAGGAACAAGTTTCGTTCTCTGGTCGT
CCCCTTTTGCTGCGGACGGAGACCGTTGCTGTACGCGGTTCTGTCCGTCA
GCGCCAATGACCGTCGCGCCGAGACAGTACCGACACACATAAACTACGAA
CAGCTAGCGCTTTCGTACAAATCCTTGGCCTTGCAGTCACTTAGAAAAGC
TCTTTCGGATGTTAGTAACGCAAGCGAGGCCCTCATGACCTGTCTCATTC
TATGCACACTGGAAATTGCCTCAGGCTGCCAACCGGATTGGGTGCGCCAT
GCTAAGGGCGCCTTTGCCATTATAAACAGCTGCTCTAGCTTGATTGATCC
CGAGGTTTTGTTTTTCGCTCGGAGCTACTTCCAGTCTCGTACTGTCTTCT
TCCGCACTACGGGCTGCCATGATGATCTGCTTGACAAGGATGCCGAACGT
CTGCTTGAGTCCCAGACTGGAATCGACCATGGCATGGACTTTTTCTCGCA
ATGCACAACCCTAGGATTGAATTACACAGACGAGCGGACGGAAATACAGC
CCCATTTTGGTTGTTCCCTCAGCTTGCTCGACATCATCGCACGGGCAACC
GACTTGGTCGGCCAGAAACAGAAGCTTCGTCGCAACGGCTGCAACTCCTT
CTTTTCCGAAGGGGAAATGATGCAGCGGGCCATGTCCCTACGAAGCGAGC
TGGACCTGTTGCCTAAAGAACATTCCCCAGATAGCGACTATCTAACAACT
TGCGGAGAGTGTTTTCGCATGGCTGCCGACCTATACTTGCAGCTGGCGTG
CGACATCCCCTTAACCCAGCCCGCCCTCCAGACACTGCTAGCTAAACTCC
TGGACCACATTGGCAAAGTCATCCGGGAGGATCAGGAGCGGCAACTCTTC
CCGATGTGGCCACTGTTCCTGGCAGGGTGTCTGTCTACCACCGACGAGGA
TCGGGTACGCGTTCTCAACTACTTCACTTACCTCGCCCACGCATGGCCAG
TCAGCAACATCCCCATCGTGCGCGAAGCCACGGAGACAGTTTGGAAGTTT
CGAGACTTGAACCCTCATGAGTGTGGAAGTGGGTTCGATTGGCAAATGAT
AATCAGCCGGATGAACTGGAAATTGGCATTGTCGTAGCGAATGGCTACCG
GCTACCTGTAAAGAAGCAGAATCGGAGGCACTTCATCTCCGTTTCGGCCG
AGGATGTGGCCTTATTATCATCTGAGCACAACCAAGAAATTGTACCCGCA
GACAAAGATAATACACGCACCAAGAAAGTAAATGGCCACGCACTTAGCCC
TGTCAGACTAGAGGGATCGGTCTTTGCATCTCCTTTAGTCGATTGCAGTG
CCCTTGAGCAGCAGCTCTTCCAATATTAGGAGAAACCGGCTTGCAAGAAC
TGTATCGTGCGCGGATTCGAGTGCCCGTACCTATCGGAGAACTCGCAACT
GATCAACCTGCGGTTCAAGATCTCTCTTGAGCGCAAGCGTCGTTGCGGAG
ATGAACGTCCGGAGTCGAACTGGCTGTTTGGCTTGCAAGAACCTGCAGGT
AATCAGCAGAGTGAGAGTCTTTCGTGATGATTCGAGGAACAAGTTTCGTT
CTCTGGTCGTCCCCTTTTGCTGCGGACGGAGACCGTTGCTGTACGCGGTT
CTGTCCGTCAGCGCCAATGACCGTCGCGCCGAGACAGTACCGACACACAT
AAACTACGAACAGCTAGCGCTTTCGTACAAATCCTTGGCCTTGCAGTCAC
TTAGAAAAGCTCTTTCGGATGTTAGTAACGCAAGCGAGGCCCTCATGACC
TGTCTCATTCTATGCACACTGGAAATTGCCTCAGGCTGCCAACCGGATTG
GGTGCGCCATGCTAAGGGCGCCTTTGCCATTATAAACAGCTGCTCTAGCT
TGATTGATCCCGAGGTTTTGTTTTTCGCTCGGAGCTACTTCCAGTCTCGT
ACTGTCTTCTTCCGCACTACGGGCTGCCATGATGATCTGCTTGACAAGGA
TGCCGAACGTCTGCTTGAGTCCCAGACTGGAATCGACCATGGCATGGACT
TTTTCTCGCAATGCACAACCCTAGGATTGAATTACACAGACGAGCGGACG
GAAATACAGCCCCATTTTGGTTGTTCCCTCAGCTTGCTCGACATCATCGC
ACGGGCAACCGACTTGGTCGGCCAGAAACAGAAGCTTCGTCGCAACGGCT
GCAACTCCTTCTTTTCCGAAGGGGAAATGATGCAGCGGGCCATGTCCCTA
CGAAGCGAGCTGGACCTGTTGCCTAAAGAACATTCCCCAGATAGCGACTA
TCTAACAACTTGCGGAGAGTGTTTTCGCATGGCTGCCGACCTATACTTGC
AGCTGGCGTGCGACATCCCCTTAACCCAGCCCGCCCTCCAGACACTGCTA
GCTAAACTCCTGGACCACATTGGCAAAGTCATCCGGGAGGATCAGGAGCG
GCAACTCTTCCCGATGTGGCCACTGTTCCTGGCAGGGTGTCTGTCTACCA
CCGACGAGGATCGGGTACGCGTTCTCAACTACTTCACTTACCTCGCCCAC
GCATGGCCAGTCAGCAACATCCCCATCGTGCGCGAAGCCACGGAGACAGT
TTGGAAGTTTCGAGACTTGAACCCTCATGAGTGTGGAAGTGGGTTCGATT
GGCAAATGATAATCAGCCGGATGAACTGGAAATTGGCATTGTCGTAGCGA
ATGGCTACCGGCTACCTGTAAAGAAGCAGAATCGGAGGCACTTCATCTCC
GTTTCGGCCGAGGATGTGGCCTTATTATCATCTGAGCACAACCAAGAAAT
TGTACCCGCAGACAAAGATAATACACGCACCAAGAAAGTAAATGGCCACG
CACTTAGCCCTGTCAGACTAGAGGGATCGGTCTTTGCATCTCCTTTAGTC
GATTGCAGTGCCCTTGAGCAGCAGCTCTTCCAATATTAGGAGAAACCGGC
TTGCAAGAACTGTATCGTGCGCGGATTCGAGTGCCCGTACCTATCGGAGA
ACTCGCAACTGATCAACCTGCGGTTCAAGATCTCTCTTGAGCGCAAGCGT
CGTTGCGGAGATGAACGTCCGGAGTCGAACTGGCTGTTTGGCTTGCAAGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004928-T1.utr5p1 | KJC3_004928-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1140553..1142449 - |
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