|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1171496..1172529- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004938-T1 ID=KJC3_004938-T1|Name=KJC3_004938-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1034bp|location=Sequence derived from alignment at ch4:1171496..1172529- (Aspergillus niger KJC3)
ACTCAATCTCTTGCTTTGCGGCGCGATTCAGCTGCGCTCTTATCCGGTCC
TTTTGTTTTGAGGGAAATACTGGCTCGCTCTTGCGATCCTTGACACAACA
ATGAATAATATTCGCCAGATCCAAGCGCTCAATAAACGCGAGCTCGAAAA
TGCCATGTATGTCATGCTTATCTTCAACCCGGCTTATTGGTTTCTCTGCT
AATCTTTGTGGACATCTCAGACCCCCGGAAGCTTCCTGGCACGCAGACTA
CAGAGATACCGCATACATCTACATCGGTGGACTACCATACGACTTGTCCG
AGGGTGATATTGTAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACATC
AATCTCGTGCGCGATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTTCT
GAAGTACGAAGATCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGGTG
GGGCAACAGTTCTAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACAAG
CGGCGCGATGACGAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGCGA
TACGACTAGCAAGGATCATGATGACAGAGATACAGATGACGAACGGAGAA
GACGGAGGAAGAGAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCAGA
CGGCCTCTGCTCAAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAATCA
TGACGAGGAAGATCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGAGG
AGGTCGCACTCGCCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTCGG
AGACGTGACAGCCGTGAGAGATCAAGCCGCCATCACCGTTCTCACCGTCG
GAGACACGACGACGATCGAGACTCAGAGAGAAGACGCAGAGATCGGTCGC
CCAGAAGGGAAGAGCGATCTCATAGAGCTAGATCTCCATCTAGAAGGGAG
AGATCCGACAGAGAGAGGACGCCGGTCGCGTCGCGATCGCCCGACTCCCG
ACGCTACAGAGATAGACATGATCGACACCGTTAA back to topCoding sequence (CDS) from alignment at ch4:1171496..1172529- >KJC3_004938-T1 ID=KJC3_004938-T1|Name=KJC3_004938-T1|organism=Aspergillus niger KJC3|type=CDS|length=1740bp|location=Sequence derived from alignment at ch4:1171496..1172529- (Aspergillus niger KJC3)
ACCCCCGGAAGCTTCCTGGCACGCAGACTACAGAGATACCGCATACATCT
ACATCGGTGGACTACCATACGACTTGTCCGAGGGTGATATTGTAACCATC
TTTTCGCAGTACGGCGAGCCCGTGCACATCAATCTCGTGCGCGATAAAGA
GACTGGAAAGAGTCGGGGTTTCGCCTTTCTGAAGTACGAAGATCAGCGCA
GTACAGATCTCGCAGTCGACAATCTTGGTGGGGCAACAGTTCTAGGGAGA
GTGCTGCGTGTGGACCACGTGAGGTACAAGCGGCGCGATGACGAGGAGGA
AACAGACAATGTCGCAAAGCTCATGGGCGATACGACTAGCAAGGATCATG
ATGACAGAGATACAGATGACGAACGGAGAAGACGGAGGAAGAGAAGGGGA
AGTGAATCAAGGGAAGAGGAGCCCGCCAGACGGCCTCTGCTCAAGGAGGA
GATCGAGCTACAGGAGCTGATCAAGAATCATGACGAGGAAGATCCGATGA
AGGAATTCCTTATTGAAGAGAAGAAAGAGGAGGTCGCACTCGCCTTGGAG
AAAATGCGCAGCAGCGAGAAGTCATCTCGGAGACGTGACAGCCGTGAGAG
ATCAAGCCGCCATCACCGTTCTCACCGTCGGAGACACGACGACGATCGAG
ACTCAGAGAGAAGACGCAGAGATCGGTCGCCCAGAAGGGAAGAGCGATCT
CATAGAGCTAGATCTCCATCTAGAAGGGAGAGATCCGACAGAGAGAGGAC
GCCGGTCGCGTCGCGATCGCCCGACTCCCGACGCTACAGAGATAGACATG
ATCGACACCGTTAAATGAATAATATTCGCCAGATCCAAGCGCTCAATAAA
CGCGAGCTCGAAAATGCCATACCCCCGGAAGCTTCCTGGCACGCAGACTA
CAGAGATACCGCATACATCTACATCGGTGGACTACCATACGACTTGTCCG
AGGGTGATATTGTAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACATC
AATCTCGTGCGCGATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTTCT
GAAGTACGAAGATCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGGTG
GGGCAACAGTTCTAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACAAG
CGGCGCGATGACGAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGCGA
TACGACTAGCAAGGATCATGATGACAGAGATACAGATGACGAACGGAGAA
GACGGAGGAAGAGAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCAGA
CGGCCTCTGCTCAAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAATCA
TGACGAGGAAGATCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGAGG
AGGTCGCACTCGCCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTCGG
AGACGTGACAGCCGTGAGAGATCAAGCCGCCATCACCGTTCTCACCGTCG
GAGACACGACGACGATCGAGACTCAGAGAGAAGACGCAGAGATCGGTCGC
CCAGAAGGGAAGAGCGATCTCATAGAGCTAGATCTCCATCTAGAAGGGAG
AGATCCGACAGAGAGAGGACGCCGGTCGCGTCGCGATCGCCCGACTCCCG
ACGCTACAGAGATAGACATGATCGACACCGTTAAATGAATAATATTCGCC
AGATCCAAGCGCTCAATAAACGCGAGCTCGAAAATGCCAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004938-T1.utr5p1 | KJC3_004938-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1171496..1172529 - |
|
