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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1257203..1259051- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004977-T1 ID=KJC3_004977-T1|Name=KJC3_004977-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1849bp|location=Sequence derived from alignment at ch4:1257203..1259051- (Aspergillus niger KJC3)
GGCTTTTCAATTTGTTTCTCATAGACACATCTCCTCTCTGATTCTCCTTC
GTTCTTATACTATACTATCATCATGGCGCAAACTCCGCAAGACCTTAAGA
TTGCCATTTTGGGTGCTGGTACGTACATCCTTTTTTTTTCTTCCCCCTCC
CTATAATAGGGTTTAGTATAGGAGTATGGCAGAAAACTAACGGGTGCGTG
GATGTATAGGCATGGGTGGCCTGACCTGCGCTTTGGCTCTGGCAAAGGAA
GGTTTCAAGCACATCGACGTTTATGAGAATGCACACGATCTGGGCTTCGT
TGGAGCTGGTATCCAACTGGCCCCGAACATGGCCCGCGTGCTGGATCGCC
TGGGCGTCTGGAAGCCCATTGAGGCCGAAGCTGTTAACATCACTTCCACT
AGCGTTAGAGGTATGTGCTATATTCCCTGCTGGAGGATTAAAAGATCTAC
ATGTCTATCTATATGAAACACCGAGATCAAACGCTAATAACTCCGAACAG
TCGGTGCCTCGGACTCAGAATTGGCCCACGTTCCATTGGAATATATCCAC
GATACCTACGGATATCCTCACATGGTTGGCCACCGGTCTTCCCTCGCCGG
CCACCTGTACCAAGGTTGCCTGCAGCACCCTGACCAGATCCACTTCCACT
TCGCCACTACCGCCAGCGACACCACCTTCGGCCCCAAGTCCTCCTTCACT
GCCACCCCCCGCGACGCCCCCGAGAAGGCCTACCGCGTCGAGGCCGATGT
CCTCCTCGCCTGTGATGGCATCAAGTCCCAGGCCCGTGTGGCCATGCTCG
ATCTCCTCAACATCAAGGCCAGCGTCAAGGACACCCACCAGGCCGCCTAC
CGTATCATGATCCACAAGGACCAGATCAAGGACGACCCGGAGCTCCTGGA
GCTCATGAACGGCAACCGCGTGACTCGCTGGATCGGCGAGAAGCGCCATA
TCATCGCCTACCCCGTCTCCAACAACACCATCTACAACCTCTCCACCACC
CAACCCGACACTCACTTCGCCGCCGCCACCAATGCCACCTACACCACCCG
CGGTGACAAGTCCGTCATGCTGGGCGTCTTTGGCGACTTCTGCCCCATGG
TCCAGCGTATGCTGAACTACGTCCCCGAGGGTGAAGTCTGCGAGTGGAAG
CTGCGTGTCCATGAGCCCCTCCCCACCTGGGTGCACGAGACCGTCGCCCT
CGTCGGTGATGCCTGCCACCCTACCCTGCCCCATCTCGCCCAGGGTGCCG
CCCAGGCCATCGAAGACGGTGGTGTCATTGGTGCCGTGCTCTCCAAGCTC
CCCGATACCACCCCGGCTTCCATCCACAAGGCCCTCAAGGTTTACGAGAA
GGTGCGCAAGGACCGCGCCTACGCTATCGTCGAACTGGCCGCCGCTTCCG
GTCGTGCTCTGCACCTGGGTGAAGGTGCCGCCAAGGAGGAGCGCGATCGC
CAATTCGCTGCTCTCCGCCAGGGCAAGGGCCCTGTGCCCGACAAGTGGGC
GGATGCCGATGTCCAGAAGGAGCTGTATGGCGTTGATGCGACTAAGATCG
CGCTGGAGCAATTCGACGAGCTCTTTGCTTCTGTGTAAGCTTTGGCCTTT
ATACCTTTTTCGTTTAATTTTTCCTTTTCCCATTCATTGCCTGCACGATT
GAACCCGATGTATATTGTATATAGAGCTGATTGGTTGTATTGATGATTGA
AGGTCGGGTCGTGAGGCAAAGCTGGCTTGATTGATTGATTGATTGATTGA
TCGGCCGGAATTAGTGTTCTTTTATCTAGCATTGCAGCCCCTTGCATATA
CAATGATGATGTTATGATTGTTATACAGAGTTATTTTCTTTGTTCCTAG back to topCoding sequence (CDS) from alignment at ch4:1257203..1259051- >KJC3_004977-T1 ID=KJC3_004977-T1|Name=KJC3_004977-T1|organism=Aspergillus niger KJC3|type=CDS|length=4005bp|location=Sequence derived from alignment at ch4:1257203..1259051- (Aspergillus niger KJC3)
TCGGTGCCTCGGACTCAGAATTGGCCCACGTTCCATTGGAATATATCCAC
GATACCTACGGATATCCTCACATGGTTGGCCACCGGTCTTCCCTCGCCGG
CCACCTGTACCAAGGTTGCCTGCAGCACCCTGACCAGATCCACTTCCACT
TCGCCACTACCGCCAGCGACACCACCTTCGGCCCCAAGTCCTCCTTCACT
GCCACCCCCCGCGACGCCCCCGAGAAGGCCTACCGCGTCGAGGCCGATGT
CCTCCTCGCCTGTGATGGCATCAAGTCCCAGGCCCGTGTGGCCATGCTCG
ATCTCCTCAACATCAAGGCCAGCGTCAAGGACACCCACCAGGCCGCCTAC
CGTATCATGATCCACAAGGACCAGATCAAGGACGACCCGGAGCTCCTGGA
GCTCATGAACGGCAACCGCGTGACTCGCTGGATCGGCGAGAAGCGCCATA
TCATCGCCTACCCCGTCTCCAACAACACCATCTACAACCTCTCCACCACC
CAACCCGACACTCACTTCGCCGCCGCCACCAATGCCACCTACACCACCCG
CGGTGACAAGTCCGTCATGCTGGGCGTCTTTGGCGACTTCTGCCCCATGG
TCCAGCGTATGCTGAACTACGTCCCCGAGGGTGAAGTCTGCGAGTGGAAG
CTGCGTGTCCATGAGCCCCTCCCCACCTGGGTGCACGAGACCGTCGCCCT
CGTCGGTGATGCCTGCCACCCTACCCTGCCCCATCTCGCCCAGGGTGCCG
CCCAGGCCATCGAAGACGGTGGTGTCATTGGTGCCGTGCTCTCCAAGCTC
CCCGATACCACCCCGGCTTCCATCCACAAGGCCCTCAAGGTTTACGAGAA
GGTGCGCAAGGACCGCGCCTACGCTATCGTCGAACTGGCCGCCGCTTCCG
GTCGTGCTCTGCACCTGGGTGAAGGTGCCGCCAAGGAGGAGCGCGATCGC
CAATTCGCTGCTCTCCGCCAGGGCAAGGGCCCTGTGCCCGACAAGTGGGC
GGATGCCGATGTCCAGAAGGAGCTGTATGGCGTTGATGCGACTAAGATCG
CGCTGGAGCAATTCGACGAGCTCTTTGCTTCTGTGTAAGCATGGGTGGCC
TGACCTGCGCTTTGGCTCTGGCAAAGGAAGGTTTCAAGCACATCGACGTT
TATGAGAATGCACACGATCTGGGCTTCGTTGGAGCTGGTATCCAACTGGC
CCCGAACATGGCCCGCGTGCTGGATCGCCTGGGCGTCTGGAAGCCCATTG
AGGCCGAAGCTGTTAACATCACTTCCACTAGCGTTAGAGATGGCGCAAAC
TCCGCAAGACCTTAAGATTGCCATTTTGGGTGCTGTCGGTGCCTCGGACT
CAGAATTGGCCCACGTTCCATTGGAATATATCCACGATACCTACGGATAT
CCTCACATGGTTGGCCACCGGTCTTCCCTCGCCGGCCACCTGTACCAAGG
TTGCCTGCAGCACCCTGACCAGATCCACTTCCACTTCGCCACTACCGCCA
GCGACACCACCTTCGGCCCCAAGTCCTCCTTCACTGCCACCCCCCGCGAC
GCCCCCGAGAAGGCCTACCGCGTCGAGGCCGATGTCCTCCTCGCCTGTGA
TGGCATCAAGTCCCAGGCCCGTGTGGCCATGCTCGATCTCCTCAACATCA
AGGCCAGCGTCAAGGACACCCACCAGGCCGCCTACCGTATCATGATCCAC
AAGGACCAGATCAAGGACGACCCGGAGCTCCTGGAGCTCATGAACGGCAA
CCGCGTGACTCGCTGGATCGGCGAGAAGCGCCATATCATCGCCTACCCCG
TCTCCAACAACACCATCTACAACCTCTCCACCACCCAACCCGACACTCAC
TTCGCCGCCGCCACCAATGCCACCTACACCACCCGCGGTGACAAGTCCGT
CATGCTGGGCGTCTTTGGCGACTTCTGCCCCATGGTCCAGCGTATGCTGA
ACTACGTCCCCGAGGGTGAAGTCTGCGAGTGGAAGCTGCGTGTCCATGAG
CCCCTCCCCACCTGGGTGCACGAGACCGTCGCCCTCGTCGGTGATGCCTG
CCACCCTACCCTGCCCCATCTCGCCCAGGGTGCCGCCCAGGCCATCGAAG
ACGGTGGTGTCATTGGTGCCGTGCTCTCCAAGCTCCCCGATACCACCCCG
GCTTCCATCCACAAGGCCCTCAAGGTTTACGAGAAGGTGCGCAAGGACCG
CGCCTACGCTATCGTCGAACTGGCCGCCGCTTCCGGTCGTGCTCTGCACC
TGGGTGAAGGTGCCGCCAAGGAGGAGCGCGATCGCCAATTCGCTGCTCTC
CGCCAGGGCAAGGGCCCTGTGCCCGACAAGTGGGCGGATGCCGATGTCCA
GAAGGAGCTGTATGGCGTTGATGCGACTAAGATCGCGCTGGAGCAATTCG
ACGAGCTCTTTGCTTCTGTGTAAGCATGGGTGGCCTGACCTGCGCTTTGG
CTCTGGCAAAGGAAGGTTTCAAGCACATCGACGTTTATGAGAATGCACAC
GATCTGGGCTTCGTTGGAGCTGGTATCCAACTGGCCCCGAACATGGCCCG
CGTGCTGGATCGCCTGGGCGTCTGGAAGCCCATTGAGGCCGAAGCTGTTA
ACATCACTTCCACTAGCGTTAGAGATGGCGCAAACTCCGCAAGACCTTAA
GATTGCCATTTTGGGTGCTGTCGGTGCCTCGGACTCAGAATTGGCCCACG
TTCCATTGGAATATATCCACGATACCTACGGATATCCTCACATGGTTGGC
CACCGGTCTTCCCTCGCCGGCCACCTGTACCAAGGTTGCCTGCAGCACCC
TGACCAGATCCACTTCCACTTCGCCACTACCGCCAGCGACACCACCTTCG
GCCCCAAGTCCTCCTTCACTGCCACCCCCCGCGACGCCCCCGAGAAGGCC
TACCGCGTCGAGGCCGATGTCCTCCTCGCCTGTGATGGCATCAAGTCCCA
GGCCCGTGTGGCCATGCTCGATCTCCTCAACATCAAGGCCAGCGTCAAGG
ACACCCACCAGGCCGCCTACCGTATCATGATCCACAAGGACCAGATCAAG
GACGACCCGGAGCTCCTGGAGCTCATGAACGGCAACCGCGTGACTCGCTG
GATCGGCGAGAAGCGCCATATCATCGCCTACCCCGTCTCCAACAACACCA
TCTACAACCTCTCCACCACCCAACCCGACACTCACTTCGCCGCCGCCACC
AATGCCACCTACACCACCCGCGGTGACAAGTCCGTCATGCTGGGCGTCTT
TGGCGACTTCTGCCCCATGGTCCAGCGTATGCTGAACTACGTCCCCGAGG
GTGAAGTCTGCGAGTGGAAGCTGCGTGTCCATGAGCCCCTCCCCACCTGG
GTGCACGAGACCGTCGCCCTCGTCGGTGATGCCTGCCACCCTACCCTGCC
CCATCTCGCCCAGGGTGCCGCCCAGGCCATCGAAGACGGTGGTGTCATTG
GTGCCGTGCTCTCCAAGCTCCCCGATACCACCCCGGCTTCCATCCACAAG
GCCCTCAAGGTTTACGAGAAGGTGCGCAAGGACCGCGCCTACGCTATCGT
CGAACTGGCCGCCGCTTCCGGTCGTGCTCTGCACCTGGGTGAAGGTGCCG
CCAAGGAGGAGCGCGATCGCCAATTCGCTGCTCTCCGCCAGGGCAAGGGC
CCTGTGCCCGACAAGTGGGCGGATGCCGATGTCCAGAAGGAGCTGTATGG
CGTTGATGCGACTAAGATCGCGCTGGAGCAATTCGACGAGCTCTTTGCTT
CTGTGTAAGCATGGGTGGCCTGACCTGCGCTTTGGCTCTGGCAAAGGAAG
GTTTCAAGCACATCGACGTTTATGAGAATGCACACGATCTGGGCTTCGTT
GGAGCTGGTATCCAACTGGCCCCGAACATGGCCCGCGTGCTGGATCGCCT
GGGCGTCTGGAAGCCCATTGAGGCCGAAGCTGTTAACATCACTTCCACTA
GCGTTAGAGATGGCGCAAACTCCGCAAGACCTTAAGATTGCCATTTTGGG
TGCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0071949 | FAD binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004977-T1.utr3p1 | KJC3_004977-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004977-T1.utr5p1 | KJC3_004977-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036188 |
| DBxref | InterPro:IPR002938 |
| DBxref | PFAM:PF13450 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1257203..1259051 - |
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