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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1307609..1310629+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005000-T1 ID=KJC3_005000-T1|Name=KJC3_005000-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3021bp|location=Sequence derived from alignment at ch4:1307609..1310629+ (Aspergillus niger KJC3)
GCTTCGCAAATACAGACACGCTCGCGCGCGTTTGGTGTTGAGAGTTGCAT
CGCGACGCGTTCTCATAGTGTTCTTCTTTTCTTTACATACGCACTCATCT
CCCTCTGTTTCATTCCTCCTACCCCCTCCCGCATCCTCCTGCTACCATTA
TCCTGACCAGCCTTCGAGATTTACCGACCTGTGCATGGTAAATCGCAGCA
ATGACGTCCCGGAAGACGCAGCAGGAGATTGACAAGACCTTCAAGAAGGT
CGCTGAAGGCATTCAAACATTCGAGGGTATCTATGAGAAGATCCGGTCAA
CATCAAATATCACGCAACGGGATAAGCTCGAGGAGAACCTGAAACGGGAG
ATCAAGAAGTTACAACGATATCGTGACCAAATCAAGTCATGGGCATCAGG
AAACGAGGTCAAGGATAAGGGGCCGCTGCTAGAGCAGCGCAGGGCCATTG
AGACTGTGGGCTTATCCGATCCCTGTTGAAGCGCTTACTCAATGAGGGGC
TGCTGCTAACTTGTGTTGTCTGATAGTGCATGGAACAGTTCAAGGCAGTA
GAGAAGGAGATGAAGACAAAGGCATATTCGAAAGAAGGGTTGTCGGCTGC
ATCGAGATTAGATCCTAAAGAGAAGGAGAAGGTCGAGACTTGCGACTTCC
TATCGAATATGGTGGACGAGCTGCAACAGAAGATCGAGGCCTTCGAAGCG
GAAGAGGAAACGCTTCACATGCAAATGAAGAAAGGCAAGAAGGACGTGGC
CAAGACGAATCGCCTATCAGACCTTTCACGCTTAACAGAACGCCATAAGT
GGCATGTCAATAAGTTGGAACTGTTGCTACGGTCGCTGCAGAACGGCAAC
CTCGAAGTTGCTCAGGTGCTGGATATCAAGGAAAGCATTAAGTACTATGT
GGAGGATGGGCACAACATTGACTACTCTGGTGAGGATGAAACCTTGTACG
ACGACCTGAACCTGGACAACGAGGCAGAGGTGCAGTTCGGCATGACAGGG
GACAACGATAAAGTATCCTCGCAAGACACCCAGTCGATCCAAGACGAGGA
GCCGGAAATCAAGCCCAAGGTCAACAAGGGTGAGAGCGCAGGATTACGAA
GGCCATCTGCACAGATGAAGTCCCCTCTACCTGTGTTAGCAACACTTCAT
CCGTCGACCTCCACGACTGCCGCCTCAGGCATGAAACCCGCACCACCGCC
TACCCGCCTCCCCGGGGAAACACTCAAGTACGCGTCCGCTGCCGCTGCCG
CTGCTGCAAGTGACAAGAACGGGGTGGGCATTGCACCACTTCCGCCACCT
CCAGGCGCAAGCCCCGCTTTCCCGCACGCTGTGCCTGCAAACAAAGCTTC
AGCCACTGCCTCGCCGAGCGTTGCATCGGTACAACCTACTACATCCAAGG
CCGCGCCGGTCCTCACGATAGCGGCGGAGGACATCACCGGTGCACGATCA
AAAACACCTTCTGTCAGCCCCAACGTGGCTGCTGCGAGCACATCGTCACA
TACAATGGATAAAGTTGAGGCCCCAGCAGCTGCCAAGGAGCAACCTGCGA
CGAACGGTGAGGCGACGAGTAAGCAAGAGGAGCAGGAGCAGGAGCAGGAG
AGCGAGGAATCGATCTTCCACCTCCCTCCCGGCCTGCAGGATCTTATTCA
GTCGTTCGAGGTCACGAGGTCCCGGGCGTCAGCAAGCGCAGCCAACGCCT
CCCCGTCAGTGCAGCGCATGCTTGCAACATCCCTCGCGAACTGCCCGGAG
CCTGCCGATGCGGAGAAGCCTCGTCATTACAAGCCTCAAAACCCTTACAA
TACGCCTTTATACTATCCTCAGGAACCGCTCTCCATCTTCGATGATCCGC
GCTTGTACGAAACCGGGCGCATCGACACGGATACACTGTTCTACCTGTTC
TACTACCGACAAGGCAGTTACCAACAGTATCTCGCGGCCAAGGCGTTGAA
GAACCAGAGTTGGCGCTTCCACAAACAGTATCAAACCTGGTTCCAACGTC
ACGAGGAGCCGAAGACGATCACGGAGGAGTTTGAGCAGGGCACATATCGC
TTCTTCGATTATGAGAGTACATGGTAAGTAACCCACTCGGAAATCCCGAA
GACCCGCAGAACCCAGCTAACAAACCTTGCAGGATGAACCGTCGCAAGGC
TGACTTCAAGTTCGTCTACAAATACTTGGAAGATGACCTGTAATCGAATT
GATACGCAAACATGAGAGGTCTCTGTACATGGCTGGGTTCGATGAAGATA
AGTGGAAAAGTGCCTCGGTCGGTTGGGTTTGGCTTTATTAGCAAGGATGC
ACGGAAATATGGGAGTTCAGTTTAATCAATGTGTCTATGCAATTGGTATT
GTGTTGCCATCTGTTTAACGATCTGTTGTTTCATCCAAGTCTTCGGGGGA
GCATGCAGGGACGAGTCTACGAGACACGGGAGTTCTGTGCTGTTCTTACA
TGGTGGCTTATGGGATGCAGCCATGACTTTAGGTAGTGATGCTTGTTGTT
ACCGTACATTGACCATTTGAGATGGAATCTTCAAGTTCATAGTACTTGAC
CAAACCTGATTTGATTTGTGTCTGTTGATCGGTAAAGTCGGCAAGGGAAT
CCCTGTCAAAAGTGAGCGGTGCATGCTTGCAGAACGCCCAGAGAGATAGA
CTAACTAGTACTCCCTCCCGTACTCAGGGATACCTAGACAAAGAAGATAG
GAACAAGCACTAAGTTCTTAGAGGGGTGGGATGATAATCTGTGGCTGGAA
GATGATGAACACATCCAACCAATAGTGAAGCCAAGGAAAAAGGAAAACAC
TAAATAGATCGGTATTGTGTAGTACAAAAGTACGAACTTAATAACTCATT
CCCCTTTTGAAGTCTTGAGCAGGAAAGGGCAAAACCTCGGCAGTGATCAA
TCAATCACCTCTCCGATAGCTTTTCCCCGTGACGCACTTTGACAGACTTA
GTACGGAATAATGTCCTCCGTCCGAGGCTCTGTGGAATGCCCGACAACTG
GATGAATTGTCGCGATCCACA back to topCoding sequence (CDS) from alignment at ch4:1307609..1310629+ >KJC3_005000-T1 ID=KJC3_005000-T1|Name=KJC3_005000-T1|organism=Aspergillus niger KJC3|type=CDS|length=5589bp|location=Sequence derived from alignment at ch4:1307609..1310629+ (Aspergillus niger KJC3)
ATGACGTCCCGGAAGACGCAGCAGGAGATTGACAAGACCTTCAAGAAGGT
CGCTGAAGGCATTCAAACATTCGAGGGTATCTATGAGAAGATCCGGTCAA
CATCAAATATCACGCAACGGGATAAGCTCGAGGAGAACCTGAAACGGGAG
ATCAAGAAGTTACAACGATATCGTGACCAAATCAAGTCATGGGCATCAGG
AAACGAGGTCAAGGATAAGGGGCCGCTGCTAGAGCAGCGCAGGGCCATTG
AGACTTGCATGGAACAGTTCAAGGCAGTAGAGAAGGAGATGAAGACAAAG
GCATATTCGAAAGAAGGGTTGTCGGCTGCATCGAGATTAGATCCTAAAGA
GAAGGAGAAGGTCGAGACTTGCGACTTCCTATCGAATATGGTGGACGAGC
TGCAACAGAAGATCGAGGCCTTCGAAGCGGAAGAGGAAACGCTTCACATG
CAAATGAAGAAAGGCAAGAAGGACGTGGCCAAGACGAATCGCCTATCAGA
CCTTTCACGCTTAACAGAACGCCATAAGTGGCATGTCAATAAGTTGGAAC
TGTTGCTACGGTCGCTGCAGAACGGCAACCTCGAAGTTGCTCAGGTGCTG
GATATCAAGGAAAGCATTAAGTACTATGTGGAGGATGGGCACAACATTGA
CTACTCTGGTGAGGATGAAACCTTGTACGACGACCTGAACCTGGACAACG
AGGCAGAGGTGCAGTTCGGCATGACAGGGGACAACGATAAAGTATCCTCG
CAAGACACCCAGTCGATCCAAGACGAGGAGCCGGAAATCAAGCCCAAGGT
CAACAAGGGTGAGAGCGCAGGATTACGAAGGCCATCTGCACAGATGAAGT
CCCCTCTACCTGTGTTAGCAACACTTCATCCGTCGACCTCCACGACTGCC
GCCTCAGGCATGAAACCCGCACCACCGCCTACCCGCCTCCCCGGGGAAAC
ACTCAAGTACGCGTCCGCTGCCGCTGCCGCTGCTGCAAGTGACAAGAACG
GGGTGGGCATTGCACCACTTCCGCCACCTCCAGGCGCAAGCCCCGCTTTC
CCGCACGCTGTGCCTGCAAACAAAGCTTCAGCCACTGCCTCGCCGAGCGT
TGCATCGGTACAACCTACTACATCCAAGGCCGCGCCGGTCCTCACGATAG
CGGCGGAGGACATCACCGGTGCACGATCAAAAACACCTTCTGTCAGCCCC
AACGTGGCTGCTGCGAGCACATCGTCACATACAATGGATAAAGTTGAGGC
CCCAGCAGCTGCCAAGGAGCAACCTGCGACGAACGGTGAGGCGACGAGTA
AGCAAGAGGAGCAGGAGCAGGAGCAGGAGAGCGAGGAATCGATCTTCCAC
CTCCCTCCCGGCCTGCAGGATCTTATTCAGTCGTTCGAGGTCACGAGGTC
CCGGGCGTCAGCAAGCGCAGCCAACGCCTCCCCGTCAGTGCAGCGCATGC
TTGCAACATCCCTCGCGAACTGCCCGGAGCCTGCCGATGCGGAGAAGCCT
CGTCATTACAAGCCTCAAAACCCTTACAATACGCCTTTATACTATCCTCA
GGAACCGCTCTCCATCTTCGATGATCCGCGCTTGTACGAAACCGGGCGCA
TCGACACGGATACACTGTTCTACCTGTTCTACTACCGACAAGGCAGTTAC
CAACAGTATCTCGCGGCCAAGGCGTTGAAGAACCAGAGTTGGCGCTTCCA
CAAACAGTATCAAACCTGGTTCCAACGTCACGAGGAGCCGAAGACGATCA
CGGAGGAGTTTGAGCAGGGCACATATCGCTTCTTCGATTATGAGAGTACA
TGGATGAACCGTCGCAAGGCTGACTTCAAGTTCGTCTACAAATACTTGGA
AGATGACCTGTAAATGACGTCCCGGAAGACGCAGCAGGAGATTGACAAGA
CCTTCAAGAAGGTCGCTGAAGGCATTCAAACATTCGAGGGTATCTATGAG
AAGATCCGGTCAACATCAAATATCACGCAACGGGATAAGCTCGAGGAGAA
CCTGAAACGGGAGATCAAGAAGTTACAACGATATCGTGACCAAATCAAGT
CATGGGCATCAGGAAACGAGGTCAAGGATAAGGGGCCGCTGCTAGAGCAG
CGCAGGGCCATTGAGACTTGCATGGAACAGTTCAAGGCAGTAGAGAAGGA
GATGAAGACAAAGGCATATTCGAAAGAAGGGTTGTCGGCTGCATCGAGAT
TAGATCCTAAAGAGAAGGAGAAGGTCGAGACTTGCGACTTCCTATCGAAT
ATGGTGGACGAGCTGCAACAGAAGATCGAGGCCTTCGAAGCGGAAGAGGA
AACGCTTCACATGCAAATGAAGAAAGGCAAGAAGGACGTGGCCAAGACGA
ATCGCCTATCAGACCTTTCACGCTTAACAGAACGCCATAAGTGGCATGTC
AATAAGTTGGAACTGTTGCTACGGTCGCTGCAGAACGGCAACCTCGAAGT
TGCTCAGGTGCTGGATATCAAGGAAAGCATTAAGTACTATGTGGAGGATG
GGCACAACATTGACTACTCTGGTGAGGATGAAACCTTGTACGACGACCTG
AACCTGGACAACGAGGCAGAGGTGCAGTTCGGCATGACAGGGGACAACGA
TAAAGTATCCTCGCAAGACACCCAGTCGATCCAAGACGAGGAGCCGGAAA
TCAAGCCCAAGGTCAACAAGGGTGAGAGCGCAGGATTACGAAGGCCATCT
GCACAGATGAAGTCCCCTCTACCTGTGTTAGCAACACTTCATCCGTCGAC
CTCCACGACTGCCGCCTCAGGCATGAAACCCGCACCACCGCCTACCCGCC
TCCCCGGGGAAACACTCAAGTACGCGTCCGCTGCCGCTGCCGCTGCTGCA
AGTGACAAGAACGGGGTGGGCATTGCACCACTTCCGCCACCTCCAGGCGC
AAGCCCCGCTTTCCCGCACGCTGTGCCTGCAAACAAAGCTTCAGCCACTG
CCTCGCCGAGCGTTGCATCGGTACAACCTACTACATCCAAGGCCGCGCCG
GTCCTCACGATAGCGGCGGAGGACATCACCGGTGCACGATCAAAAACACC
TTCTGTCAGCCCCAACGTGGCTGCTGCGAGCACATCGTCACATACAATGG
ATAAAGTTGAGGCCCCAGCAGCTGCCAAGGAGCAACCTGCGACGAACGGT
GAGGCGACGAGTAAGCAAGAGGAGCAGGAGCAGGAGCAGGAGAGCGAGGA
ATCGATCTTCCACCTCCCTCCCGGCCTGCAGGATCTTATTCAGTCGTTCG
AGGTCACGAGGTCCCGGGCGTCAGCAAGCGCAGCCAACGCCTCCCCGTCA
GTGCAGCGCATGCTTGCAACATCCCTCGCGAACTGCCCGGAGCCTGCCGA
TGCGGAGAAGCCTCGTCATTACAAGCCTCAAAACCCTTACAATACGCCTT
TATACTATCCTCAGGAACCGCTCTCCATCTTCGATGATCCGCGCTTGTAC
GAAACCGGGCGCATCGACACGGATACACTGTTCTACCTGTTCTACTACCG
ACAAGGCAGTTACCAACAGTATCTCGCGGCCAAGGCGTTGAAGAACCAGA
GTTGGCGCTTCCACAAACAGTATCAAACCTGGTTCCAACGTCACGAGGAG
CCGAAGACGATCACGGAGGAGTTTGAGCAGGGCACATATCGCTTCTTCGA
TTATGAGAGTACATGGATGAACCGTCGCAAGGCTGACTTCAAGTTCGTCT
ACAAATACTTGGAAGATGACCTGTAAATGACGTCCCGGAAGACGCAGCAG
GAGATTGACAAGACCTTCAAGAAGGTCGCTGAAGGCATTCAAACATTCGA
GGGTATCTATGAGAAGATCCGGTCAACATCAAATATCACGCAACGGGATA
AGCTCGAGGAGAACCTGAAACGGGAGATCAAGAAGTTACAACGATATCGT
GACCAAATCAAGTCATGGGCATCAGGAAACGAGGTCAAGGATAAGGGGCC
GCTGCTAGAGCAGCGCAGGGCCATTGAGACTTGCATGGAACAGTTCAAGG
CAGTAGAGAAGGAGATGAAGACAAAGGCATATTCGAAAGAAGGGTTGTCG
GCTGCATCGAGATTAGATCCTAAAGAGAAGGAGAAGGTCGAGACTTGCGA
CTTCCTATCGAATATGGTGGACGAGCTGCAACAGAAGATCGAGGCCTTCG
AAGCGGAAGAGGAAACGCTTCACATGCAAATGAAGAAAGGCAAGAAGGAC
GTGGCCAAGACGAATCGCCTATCAGACCTTTCACGCTTAACAGAACGCCA
TAAGTGGCATGTCAATAAGTTGGAACTGTTGCTACGGTCGCTGCAGAACG
GCAACCTCGAAGTTGCTCAGGTGCTGGATATCAAGGAAAGCATTAAGTAC
TATGTGGAGGATGGGCACAACATTGACTACTCTGGTGAGGATGAAACCTT
GTACGACGACCTGAACCTGGACAACGAGGCAGAGGTGCAGTTCGGCATGA
CAGGGGACAACGATAAAGTATCCTCGCAAGACACCCAGTCGATCCAAGAC
GAGGAGCCGGAAATCAAGCCCAAGGTCAACAAGGGTGAGAGCGCAGGATT
ACGAAGGCCATCTGCACAGATGAAGTCCCCTCTACCTGTGTTAGCAACAC
TTCATCCGTCGACCTCCACGACTGCCGCCTCAGGCATGAAACCCGCACCA
CCGCCTACCCGCCTCCCCGGGGAAACACTCAAGTACGCGTCCGCTGCCGC
TGCCGCTGCTGCAAGTGACAAGAACGGGGTGGGCATTGCACCACTTCCGC
CACCTCCAGGCGCAAGCCCCGCTTTCCCGCACGCTGTGCCTGCAAACAAA
GCTTCAGCCACTGCCTCGCCGAGCGTTGCATCGGTACAACCTACTACATC
CAAGGCCGCGCCGGTCCTCACGATAGCGGCGGAGGACATCACCGGTGCAC
GATCAAAAACACCTTCTGTCAGCCCCAACGTGGCTGCTGCGAGCACATCG
TCACATACAATGGATAAAGTTGAGGCCCCAGCAGCTGCCAAGGAGCAACC
TGCGACGAACGGTGAGGCGACGAGTAAGCAAGAGGAGCAGGAGCAGGAGC
AGGAGAGCGAGGAATCGATCTTCCACCTCCCTCCCGGCCTGCAGGATCTT
ATTCAGTCGTTCGAGGTCACGAGGTCCCGGGCGTCAGCAAGCGCAGCCAA
CGCCTCCCCGTCAGTGCAGCGCATGCTTGCAACATCCCTCGCGAACTGCC
CGGAGCCTGCCGATGCGGAGAAGCCTCGTCATTACAAGCCTCAAAACCCT
TACAATACGCCTTTATACTATCCTCAGGAACCGCTCTCCATCTTCGATGA
TCCGCGCTTGTACGAAACCGGGCGCATCGACACGGATACACTGTTCTACC
TGTTCTACTACCGACAAGGCAGTTACCAACAGTATCTCGCGGCCAAGGCG
TTGAAGAACCAGAGTTGGCGCTTCCACAAACAGTATCAAACCTGGTTCCA
ACGTCACGAGGAGCCGAAGACGATCACGGAGGAGTTTGAGCAGGGCACAT
ATCGCTTCTTCGATTATGAGAGTACATGGATGAACCGTCGCAAGGCTGAC
TTCAAGTTCGTCTACAAATACTTGGAAGATGACCTGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0030015 | CCR4-NOT core complex |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005000-T1.utr5p1 | KJC3_005000-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005000-T1.utr3p1 | KJC3_005000-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR038635 |
| DBxref | InterPro:IPR007282 |
| DBxref | InterPro:IPR012270 |
| DBxref | InterPro:IPR007207 |
| DBxref | PFAM:PF04065 |
| DBxref | PFAM:PF04153 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1307609..1310629 + |
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